Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3604

Experiment: DAC19_cps8_1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DAC19_cps8_1MOI
4,668,166	-		BT3603	0.42	-1.0
4,668,190	+		BT3603	0.43	+1.0
4,668,271	+		BT3603	0.48	-1.2
4,668,330	+		BT3603	0.52	-1.2
4,668,331	-		BT3603	0.52	-3.0
4,668,365	-		BT3603	0.54	-1.0
4,668,367	+		BT3603	0.54	-1.0
4,668,367	+		BT3603	0.54	-0.7
4,668,500	+		BT3603	0.62	-3.3
4,668,518	+		BT3603	0.63	-2.0
4,668,519	-		BT3603	0.63	+0.4
4,668,546	+		BT3603	0.64	-2.5
4,668,608	+		BT3603	0.68	-1.2
4,668,631	-		BT3603	0.69	-0.0
4,668,635	-		BT3603	0.70	-0.0
4,668,748	-		BT3603	0.76	-0.9
4,668,784	+		BT3603	0.79	-1.6
4,668,812	-		BT3603	0.80	-0.6
4,668,815	+		BT3603	0.80	-0.5
4,668,815	+		BT3603	0.80	-0.0
4,668,815	+		BT3603	0.80	-0.8
4,668,816	-		BT3603	0.80	+0.3
4,668,856	+		BT3603	0.83	-0.1
4,668,914	-		BT3603	0.86	-2.2
4,668,930	-		BT3603	0.87	-1.3
4,668,960	+		BT3603	0.89	-1.0
4,668,961	-		BT3603	0.89	-0.0
4,668,961	-		BT3603	0.89	-1.0
4,668,968	+		BT3603	0.89	-1.5
4,668,971	+		BT3603	0.90	-0.8
4,668,982	+				-0.6
4,668,984	+				-0.0
4,668,984	+				-0.6
4,668,985	-				-0.8
4,668,993	-				-0.8
4,668,993	-				-2.1
4,668,995	-				+2.0
4,668,996	+				-1.6
4,669,010	-				-1.3
4,669,036	+				-1.3
4,669,041	+				+1.0
4,669,042	-				-1.6
4,669,042	-				-0.8
4,669,120	-				-0.9
4,669,221	-				-0.8
4,669,268	+				-0.0
4,669,341	+				-1.9
4,669,368	-				-2.3
4,669,372	-				-1.7
4,669,424	+				-0.0
4,669,424	+				-2.6
4,669,425	-				-0.6
4,669,462	+				-1.7
4,669,538	-		BT3604	0.12	-1.0
4,669,547	-		BT3604	0.12	-0.6
4,669,547	-		BT3604	0.12	-2.0
4,669,578	+		BT3604	0.13	-2.5
4,669,592	-		BT3604	0.14	-0.3
4,669,626	-		BT3604	0.15	+0.8
4,669,642	-		BT3604	0.15	-1.8
4,669,646	-		BT3604	0.15	+0.2
4,669,746	+		BT3604	0.19	-0.5
4,669,771	+		BT3604	0.19	-1.3
4,669,827	-		BT3604	0.21	-1.6
4,669,835	+		BT3604	0.21	-0.4
4,669,915	+		BT3604	0.24	-1.8
4,669,934	+		BT3604	0.25	-1.0
4,670,065	-		BT3604	0.29	+2.3
4,670,069	-		BT3604	0.29	-1.5
4,670,071	+		BT3604	0.29	-0.8
4,670,075	-		BT3604	0.29	-2.0
4,670,094	+		BT3604	0.30	-2.5
4,670,098	+		BT3604	0.30	-2.2
4,670,099	-		BT3604	0.30	-0.3
4,670,099	-		BT3604	0.30	-1.6
4,670,100	+		BT3604	0.30	-1.1
4,670,106	+		BT3604	0.30	-1.1
4,670,107	-		BT3604	0.30	-1.0
4,670,149	+		BT3604	0.31	+0.2
4,670,150	-		BT3604	0.31	-0.8
4,670,162	+		BT3604	0.32	-1.0
4,670,163	-		BT3604	0.32	-3.0
4,670,163	-		BT3604	0.32	-0.8
4,670,168	-		BT3604	0.32	-0.9
4,670,214	-		BT3604	0.33	-1.2
4,670,214	-		BT3604	0.33	-1.0
4,670,214	-		BT3604	0.33	-3.0
4,670,224	+		BT3604	0.34	-0.3
4,670,258	+		BT3604	0.35	-2.6
4,670,272	+		BT3604	0.35	-0.2
4,670,272	+		BT3604	0.35	-1.9
4,670,276	-		BT3604	0.35	-1.8
4,670,278	-		BT3604	0.35	-2.6
4,670,360	+		BT3604	0.38	-1.6
4,670,360	+		BT3604	0.38	+0.4
4,670,458	+		BT3604	0.41	-1.9
4,670,458	+		BT3604	0.41	-0.1
4,670,459	-		BT3604	0.41	-1.0
4,670,459	-		BT3604	0.41	-2.2
4,670,509	-		BT3604	0.43	-0.0
4,670,528	+		BT3604	0.43	-1.0
4,670,528	+		BT3604	0.43	-0.0
4,670,567	-		BT3604	0.45	-1.0
4,670,569	+		BT3604	0.45	-2.7
4,670,623	-		BT3604	0.46	-0.5
4,670,718	+		BT3604	0.49	-0.0
4,670,741	+		BT3604	0.50	-1.9
4,670,771	+		BT3604	0.51	-0.4
4,670,772	-		BT3604	0.51	+0.8
4,670,809	-		BT3604	0.52	-0.9
4,670,812	+		BT3604	0.52	+0.1
4,670,814	+		BT3604	0.52	-2.2
4,670,814	+		BT3604	0.52	-3.9
4,670,835	+		BT3604	0.53	-1.2
4,670,836	-		BT3604	0.53	-0.2
4,670,850	+		BT3604	0.54	-1.9
4,670,850	+		BT3604	0.54	+0.8
4,670,869	+		BT3604	0.54	-0.5
4,670,905	+		BT3604	0.55	-2.8
4,670,906	-		BT3604	0.55	+0.1
4,670,938	+		BT3604	0.56	-0.8
4,670,939	-		BT3604	0.56	-0.0
4,670,963	+		BT3604	0.57	-1.8
4,671,010	-		BT3604	0.59	-0.0
4,671,066	+		BT3604	0.60	-1.8
4,671,086	+		BT3604	0.61	-1.0
4,671,086	+		BT3604	0.61	-1.0
4,671,115	+		BT3604	0.62	-1.0
4,671,117	+		BT3604	0.62	-1.3
4,671,142	-		BT3604	0.63	+0.6
4,671,159	+		BT3604	0.63	-1.3
4,671,160	-		BT3604	0.63	-0.7
4,671,186	-		BT3604	0.64	-1.9
4,671,215	+		BT3604	0.65	-0.6
4,671,216	-		BT3604	0.65	-0.7
4,671,216	-		BT3604	0.65	-0.6
4,671,314	-		BT3604	0.68	-4.1
4,671,331	+		BT3604	0.69	+1.2
4,671,332	-		BT3604	0.69	-2.0
4,671,364	+		BT3604	0.70	-1.9
4,671,365	-		BT3604	0.70	-2.5
4,671,366	+		BT3604	0.70	-2.2
4,671,367	-		BT3604	0.70	-0.8
4,671,369	-		BT3604	0.70	-2.0
4,671,419	-		BT3604	0.72	-2.7
4,671,420	+		BT3604	0.72	-1.3
4,671,458	-		BT3604	0.73	-0.0
4,671,469	+		BT3604	0.73	-0.8
4,671,470	-		BT3604	0.73	-0.6
4,671,496	-		BT3604	0.74	+1.0
4,671,505	+		BT3604	0.74	-0.7
4,671,505	+		BT3604	0.74	-0.0
4,671,505	+		BT3604	0.74	-0.3
4,671,507	+		BT3604	0.74	-0.2
4,671,560	-		BT3604	0.76	-1.1
4,671,570	+		BT3604	0.76	-1.4
4,671,571	-		BT3604	0.76	-1.8
4,671,571	-		BT3604	0.76	-1.6
4,671,578	-		BT3604	0.77	-1.6
4,671,578	-		BT3604	0.77	-3.1
4,671,641	-		BT3604	0.79	-0.6
4,671,716	-		BT3604	0.81	-0.6
4,671,746	+		BT3604	0.82	-0.6
4,671,746	+		BT3604	0.82	-2.5
4,671,785	+		BT3604	0.83	-1.3
4,671,786	-		BT3604	0.83	-3.3
4,671,835	+		BT3604	0.85	-1.8
4,671,872	-		BT3604	0.86	-2.0
4,671,872	-		BT3604	0.86	-0.6
4,671,875	-		BT3604	0.86	-2.5
4,671,959	+		BT3604	0.89	-0.6
4,671,962	+		BT3604	0.89	-2.1
4,671,963	-		BT3604	0.89	-2.1
4,671,965	+		BT3604	0.89	-1.6
4,671,998	+		BT3604	0.90	-1.5
4,672,097	-				-1.2
4,672,101	+				+0.4
4,672,102	-				-0.6
4,672,260	-				-3.0
4,672,260	-				-0.7
4,672,262	+				-2.9
4,672,297	+				-1.0
4,672,316	-				-0.6
4,672,327	+				-1.3
4,672,380	+				-2.2
4,672,396	+				-2.2
4,672,396	+				+3.0
4,672,396	+				-0.6
4,672,397	-				+0.6
4,672,442	+				-0.5
4,672,474	-				-2.5
4,672,474	-				-1.6
4,672,495	+		BT3605	0.11	+1.0
4,672,525	+		BT3605	0.14	-1.0
4,672,526	-		BT3605	0.14	-0.2
4,672,553	+		BT3605	0.16	-0.8
4,672,598	+		BT3605	0.20	-0.6
4,672,598	+		BT3605	0.20	+0.2
4,672,598	+		BT3605	0.20	-2.0
4,672,682	-		BT3605	0.27	-0.0
4,672,712	-		BT3605	0.30	-0.6
4,672,715	+		BT3605	0.30	-1.3
4,672,715	+		BT3605	0.30	-0.9
4,672,849	-		BT3605	0.42	-1.4
4,672,883	+		BT3605	0.45	-1.6
4,672,907	-		BT3605	0.47	+2.3
4,672,980	+		BT3605	0.53	+0.2
4,672,997	+		BT3605	0.54	+1.0
4,672,997	+		BT3605	0.54	-0.6
4,672,998	-		BT3605	0.54	-0.7
4,673,063	+		BT3605	0.60	-1.7
4,673,180	+		BT3605	0.70	-0.8
4,673,180	+		BT3605	0.70	-2.2
4,673,180	+		BT3605	0.70	+0.6
4,673,181	-		BT3605	0.70	-1.0
4,673,187	-		BT3605	0.71	-1.3
4,673,197	+		BT3605	0.72	-1.6
4,673,198	-		BT3605	0.72	-0.6
4,673,216	+		BT3605	0.73	-1.2
4,673,217	-		BT3605	0.73	-0.1
4,673,267	-		BT3605	0.78	-1.3