Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23175 and BWI76_RS23180 overlap by 4 nucleotides BWI76_RS23180 and BWI76_RS23185 are separated by 2 nucleotides BWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotides BWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotides
BWI76_RS23175: BWI76_RS23175 - propanediol utilization protein, at 4,828,369 to 4,829,481
_RS23175
BWI76_RS23180: BWI76_RS23180 - NADH dehydrogenase, at 4,829,478 to 4,830,833
_RS23180
BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390
_RS23185
BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740
_RS23190
BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197
_RS23195
Position (kb) 4829
4830
4831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4828.491 kb on + strand, within BWI76_RS23175 at 4828.499 kb on - strand, within BWI76_RS23175 at 4828.579 kb on + strand, within BWI76_RS23175 at 4828.739 kb on + strand, within BWI76_RS23175 at 4828.747 kb on - strand, within BWI76_RS23175 at 4828.784 kb on + strand, within BWI76_RS23175 at 4828.825 kb on - strand, within BWI76_RS23175 at 4829.095 kb on + strand, within BWI76_RS23175 at 4829.168 kb on - strand, within BWI76_RS23175 at 4829.449 kb on - strand at 4829.475 kb on + strand at 4829.483 kb on - strand at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.689 kb on - strand, within BWI76_RS23180 at 4830.148 kb on - strand, within BWI76_RS23180 at 4830.286 kb on + strand, within BWI76_RS23180 at 4830.324 kb on - strand, within BWI76_RS23180 at 4830.393 kb on + strand, within BWI76_RS23180 at 4830.401 kb on - strand, within BWI76_RS23180 at 4830.669 kb on + strand, within BWI76_RS23180 at 4830.684 kb on + strand, within BWI76_RS23180 at 4830.821 kb on + strand at 4830.890 kb on - strand at 4831.000 kb on - strand, within BWI76_RS23185 at 4831.077 kb on - strand, within BWI76_RS23185 at 4831.094 kb on + strand, within BWI76_RS23185 at 4831.420 kb on + strand at 4831.420 kb on + strand at 4831.428 kb on - strand, within BWI76_RS23190 at 4831.469 kb on - strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 4,828,491 + BWI76_RS23175 0.11 -2.0 4,828,499 - BWI76_RS23175 0.12 -1.9 4,828,579 + BWI76_RS23175 0.19 -0.0 4,828,739 + BWI76_RS23175 0.33 +0.1 4,828,747 - BWI76_RS23175 0.34 -1.8 4,828,784 + BWI76_RS23175 0.37 -0.2 4,828,825 - BWI76_RS23175 0.41 +0.3 4,829,095 + BWI76_RS23175 0.65 -0.1 4,829,168 - BWI76_RS23175 0.72 -0.0 4,829,449 - +0.8 4,829,475 + -0.2 4,829,483 - -3.2 4,829,648 + BWI76_RS23180 0.13 +0.3 4,829,648 + BWI76_RS23180 0.13 +3.2 4,829,689 - BWI76_RS23180 0.16 +1.1 4,830,148 - BWI76_RS23180 0.49 +0.5 4,830,286 + BWI76_RS23180 0.60 +0.8 4,830,324 - BWI76_RS23180 0.62 +0.1 4,830,393 + BWI76_RS23180 0.67 +0.3 4,830,401 - BWI76_RS23180 0.68 +0.6 4,830,669 + BWI76_RS23180 0.88 +1.1 4,830,684 + BWI76_RS23180 0.89 +1.3 4,830,821 + +1.5 4,830,890 - -0.3 4,831,000 - BWI76_RS23185 0.30 +1.2 4,831,077 - BWI76_RS23185 0.43 +0.6 4,831,094 + BWI76_RS23185 0.46 -1.2 4,831,420 + -0.3 4,831,420 + +0.5 4,831,428 - BWI76_RS23190 0.11 -0.8 4,831,469 - BWI76_RS23190 0.23 +1.1 4,831,538 + BWI76_RS23190 0.42 +0.4 4,831,538 + BWI76_RS23190 0.42 +0.9
Or see this region's nucleotide sequence