Strain Fitness in Agrobacterium fabrum C58 around Atu5104

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
110,249	+		Atu5103	0.34	+0.1
110,313	+		Atu5103	0.41	+0.1
110,313	-		Atu5103	0.41	-1.5
110,315	+		Atu5103	0.41	-0.3
110,315	+		Atu5103	0.41	-1.1
110,323	-		Atu5103	0.42	-3.0
110,336	+		Atu5103	0.44	-1.5
110,542	+		Atu5103	0.66	-1.6
110,543	-		Atu5103	0.66	-2.0
110,550	-		Atu5103	0.67	+2.8
110,550	-		Atu5103	0.67	-0.8
110,550	-		Atu5103	0.67	+0.8
110,571	+		Atu5103	0.69	-0.7
110,577	+		Atu5103	0.69	-1.8
110,604	+		Atu5103	0.72	-1.2
110,610	-		Atu5103	0.73	-0.6
110,610	-		Atu5103	0.73	+0.3
110,612	-		Atu5103	0.73	+0.3
110,617	-		Atu5103	0.74	-0.7
110,619	+		Atu5103	0.74	-0.5
110,673	+		Atu5103	0.80	-0.5
110,683	-		Atu5103	0.81	-0.4
110,694	-		Atu5103	0.82	-0.7
110,737	-		Atu5103	0.87	-0.6
110,742	+		Atu5103	0.87	-0.8
110,742	+		Atu5103	0.87	-1.4
110,846	+				-1.2
110,856	+				-0.5
110,856	+				-0.7
110,856	+				+0.0
110,864	-				-1.1
110,864	-				-1.3
110,888	+				-0.7
110,957	+				+0.8
110,957	+				+1.9
110,957	+				-0.2
110,965	-				-0.4
110,965	-				-2.2
110,965	-				-0.3
111,033	-				+0.1
111,182	+				-0.4
111,368	-		Atu5104	0.27	-0.7
111,408	-		Atu5104	0.35	+0.8
111,425	-		Atu5104	0.38	-0.8
111,450	-		Atu5104	0.42	-0.5
111,481	+		Atu5104	0.48	-0.2
111,508	-		Atu5104	0.53	-1.3
111,510	+		Atu5104	0.53	+0.2
111,518	-		Atu5104	0.55	-0.5
111,534	+		Atu5104	0.58	-0.6
111,566	+		Atu5104	0.64	-1.1
111,698	-		Atu5104	0.88	+0.3
111,723	+				-1.4
111,769	+				-0.1
111,770	-				-0.8
111,803	-				-0.3
111,806	+				-1.2
111,867	+		Atu5105	0.24	-0.6
111,872	+		Atu5105	0.25	-2.1
111,880	-		Atu5105	0.26	+0.0
111,885	-		Atu5105	0.28	-1.1
112,067	+		Atu5105	0.69	-0.9
112,081	-		Atu5105	0.72	-0.4
112,084	-		Atu5105	0.73	-0.6
112,143	-		Atu5105	0.87	-0.3
112,157	-		Atu5105	0.90	-0.5
112,184	-				-1.1
112,216	+				-0.7
112,304	+				-0.2
112,363	+				-0.4
112,501	+		Atu5106	0.46	-1.0
112,517	-		Atu5106	0.53	-0.6
112,559	-		Atu5106	0.71	-0.4
112,702	-				-0.2