Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3186 and Atu3187 are separated by 9 nucleotides Atu3187 and Atu3188 overlap by 1 nucleotides Atu3188 and Atu3189 are separated by 60 nucleotides
Atu3186: Atu3186 - glycerol-3-phosphate ABC transporter permease, at 195,977 to 196,858
Atu3186
Atu3187: Atu3187 - glycerol-3-phosphate ABC transporter permease, at 196,868 to 197,716
Atu3187
Atu3188: Atu3188 - glycerol-3-phosphate transporter ATP-binding subunit, at 197,716 to 198,777
Atu3188
Atu3189: Atu3189 - hypothetical protein, at 198,838 to 199,581
Atu3189
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1
2 at 196.729 kb on + strand, within Atu3186 at 196.805 kb on + strand at 196.847 kb on + strand at 197.004 kb on + strand, within Atu3187 at 197.004 kb on + strand, within Atu3187 at 197.027 kb on - strand, within Atu3187 at 197.109 kb on - strand, within Atu3187 at 197.265 kb on + strand, within Atu3187 at 197.309 kb on - strand, within Atu3187 at 197.397 kb on - strand, within Atu3187 at 197.429 kb on - strand, within Atu3187 at 197.510 kb on - strand, within Atu3187 at 197.604 kb on - strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.652 kb on - strand at 197.677 kb on + strand at 197.694 kb on + strand at 197.770 kb on + strand at 197.778 kb on - strand at 197.898 kb on + strand, within Atu3188 at 197.958 kb on - strand, within Atu3188 at 198.032 kb on - strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.140 kb on - strand, within Atu3188 at 198.145 kb on + strand, within Atu3188 at 198.220 kb on - strand, within Atu3188 at 198.226 kb on + strand, within Atu3188 at 198.290 kb on + strand, within Atu3188 at 198.300 kb on + strand, within Atu3188 at 198.376 kb on - strand, within Atu3188 at 198.470 kb on - strand, within Atu3188 at 198.544 kb on - strand, within Atu3188 at 198.593 kb on - strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.632 kb on + strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.694 kb on + strand at 198.702 kb on - strand at 198.720 kb on - strand at 198.732 kb on + strand at 198.732 kb on + strand at 198.732 kb on + strand at 198.740 kb on - strand at 198.740 kb on - strand at 198.740 kb on - strand at 198.789 kb on + strand at 198.833 kb on - strand at 198.833 kb on - strand at 198.868 kb on + strand at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.160 kb on + strand, within Atu3189 at 199.236 kb on + strand, within Atu3189 at 199.267 kb on - strand, within Atu3189 at 199.268 kb on - strand, within Atu3189 at 199.369 kb on + strand, within Atu3189 at 199.376 kb on - strand, within Atu3189 at 199.377 kb on - strand, within Atu3189 at 199.387 kb on - strand, within Atu3189 at 199.412 kb on + strand, within Atu3189 at 199.451 kb on + strand, within Atu3189 at 199.459 kb on - strand, within Atu3189 at 199.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 196,729 + Atu3186 0.85 -0.5 196,805 + +0.9 196,847 + -0.1 197,004 + Atu3187 0.16 +0.1 197,004 + Atu3187 0.16 -0.5 197,027 - Atu3187 0.19 -0.1 197,109 - Atu3187 0.28 -0.7 197,265 + Atu3187 0.47 -0.1 197,309 - Atu3187 0.52 +0.4 197,397 - Atu3187 0.62 +0.1 197,429 - Atu3187 0.66 +0.4 197,510 - Atu3187 0.76 +0.0 197,604 - Atu3187 0.87 -0.6 197,606 + Atu3187 0.87 +0.2 197,606 + Atu3187 0.87 -0.6 197,652 - +1.9 197,677 + +0.0 197,694 + -0.5 197,770 + +0.1 197,778 - +0.3 197,898 + Atu3188 0.17 +0.8 197,958 - Atu3188 0.23 +0.3 198,032 - Atu3188 0.30 +0.3 198,059 + Atu3188 0.32 -0.2 198,059 + Atu3188 0.32 -0.6 198,140 - Atu3188 0.40 +0.2 198,145 + Atu3188 0.40 -0.2 198,220 - Atu3188 0.47 +0.3 198,226 + Atu3188 0.48 -0.0 198,290 + Atu3188 0.54 +0.3 198,300 + Atu3188 0.55 +0.5 198,376 - Atu3188 0.62 +0.5 198,470 - Atu3188 0.71 +0.2 198,544 - Atu3188 0.78 +0.3 198,593 - Atu3188 0.83 +0.2 198,595 + Atu3188 0.83 +0.3 198,595 + Atu3188 0.83 +0.1 198,632 + Atu3188 0.86 -0.3 198,640 - Atu3188 0.87 +0.2 198,640 - Atu3188 0.87 +0.5 198,689 + +0.1 198,689 + -0.6 198,689 + +0.2 198,689 + +0.0 198,694 + +0.1 198,702 - +0.0 198,720 - +0.4 198,732 + -0.2 198,732 + -0.3 198,732 + +0.5 198,740 - -0.8 198,740 - -0.1 198,740 - +0.0 198,789 + -0.5 198,833 - +0.2 198,833 - +0.8 198,868 + +0.4 199,093 + Atu3189 0.34 -0.3 199,093 + Atu3189 0.34 -0.2 199,093 + Atu3189 0.34 +0.8 199,160 + Atu3189 0.43 -0.2 199,236 + Atu3189 0.53 -0.8 199,267 - Atu3189 0.58 -0.7 199,268 - Atu3189 0.58 +0.0 199,369 + Atu3189 0.71 -0.9 199,376 - Atu3189 0.72 +0.2 199,377 - Atu3189 0.72 +0.2 199,387 - Atu3189 0.74 -0.8 199,412 + Atu3189 0.77 +0.3 199,451 + Atu3189 0.82 -0.1 199,459 - Atu3189 0.83 -0.4 199,569 + +1.4
Or see this region's nucleotide sequence