Experiment: Benthi_leaf_C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5094 and Atu5095 are separated by 90 nucleotides Atu5095 and Atu5096 are separated by 209 nucleotides
Atu5094: Atu5094 - ISL3 family transposase, at 98,238 to 99,791
Atu5094
Atu5095: Atu5095 - hypothetical protein, at 99,882 to 100,100
Atu5095
Atu5096: Atu5096 - hypothetical protein, at 100,310 to 101,083
Atu5096
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 97.277 kb on + strand at 97.280 kb on - strand at 97.280 kb on - strand at 97.283 kb on + strand at 97.303 kb on + strand at 97.306 kb on - strand at 97.313 kb on + strand at 97.372 kb on - strand at 97.379 kb on + strand at 97.428 kb on - strand at 97.488 kb on + strand at 97.488 kb on + strand at 97.510 kb on - strand at 97.510 kb on - strand at 97.523 kb on + strand at 97.523 kb on + strand at 97.531 kb on - strand at 97.533 kb on + strand at 97.533 kb on + strand at 97.557 kb on - strand at 97.605 kb on + strand at 97.636 kb on + strand at 97.651 kb on + strand at 97.684 kb on + strand at 97.684 kb on + strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.735 kb on + strand at 97.752 kb on + strand at 97.822 kb on + strand at 97.855 kb on - strand at 97.871 kb on + strand at 97.896 kb on + strand at 97.916 kb on + strand at 98.022 kb on + strand at 98.139 kb on + strand at 98.157 kb on - strand at 98.200 kb on - strand at 98.293 kb on + strand at 98.311 kb on - strand at 98.325 kb on + strand at 98.330 kb on + strand at 98.330 kb on + strand at 98.338 kb on - strand at 98.418 kb on - strand, within Atu5094 at 98.428 kb on + strand, within Atu5094 at 98.526 kb on + strand, within Atu5094 at 98.536 kb on + strand, within Atu5094 at 98.730 kb on - strand, within Atu5094 at 98.859 kb on + strand, within Atu5094 at 98.888 kb on + strand, within Atu5094 at 98.906 kb on + strand, within Atu5094 at 98.911 kb on + strand, within Atu5094 at 98.913 kb on + strand, within Atu5094 at 98.936 kb on - strand, within Atu5094 at 98.966 kb on + strand, within Atu5094 at 99.036 kb on + strand, within Atu5094 at 99.113 kb on + strand, within Atu5094 at 99.113 kb on + strand, within Atu5094 at 99.185 kb on + strand, within Atu5094 at 99.185 kb on + strand, within Atu5094 at 99.193 kb on - strand, within Atu5094 at 99.249 kb on - strand, within Atu5094 at 99.286 kb on + strand, within Atu5094 at 99.286 kb on + strand, within Atu5094 at 99.286 kb on + strand, within Atu5094 at 99.321 kb on - strand, within Atu5094 at 99.328 kb on + strand, within Atu5094 at 99.336 kb on - strand, within Atu5094 at 99.348 kb on + strand, within Atu5094 at 99.451 kb on - strand, within Atu5094 at 99.471 kb on - strand, within Atu5094 at 99.619 kb on + strand, within Atu5094 at 99.644 kb on + strand at 99.644 kb on - strand at 99.652 kb on - strand at 99.669 kb on + strand at 99.669 kb on + strand at 99.687 kb on - strand at 99.707 kb on - strand at 99.713 kb on + strand at 99.949 kb on + strand, within Atu5095 at 99.949 kb on + strand, within Atu5095 at 99.951 kb on + strand, within Atu5095 at 99.951 kb on + strand, within Atu5095 at 99.957 kb on - strand, within Atu5095 at 99.957 kb on - strand, within Atu5095 at 99.959 kb on - strand, within Atu5095 at 99.959 kb on - strand, within Atu5095 at 99.959 kb on - strand, within Atu5095 at 99.986 kb on + strand, within Atu5095 at 99.994 kb on - strand, within Atu5095 at 99.994 kb on - strand, within Atu5095 at 100.004 kb on + strand, within Atu5095 at 100.040 kb on - strand, within Atu5095 at 100.084 kb on + strand at 100.094 kb on + strand at 100.102 kb on - strand at 100.102 kb on - strand at 100.215 kb on + strand at 100.260 kb on - strand at 100.291 kb on - strand at 100.291 kb on - strand at 100.338 kb on - strand at 100.364 kb on + strand at 100.364 kb on + strand at 100.373 kb on - strand at 100.431 kb on - strand, within Atu5096 at 100.433 kb on + strand, within Atu5096 at 100.433 kb on + strand, within Atu5096 at 100.433 kb on + strand, within Atu5096 at 100.433 kb on + strand, within Atu5096 at 100.496 kb on - strand, within Atu5096 at 100.507 kb on - strand, within Atu5096 at 100.517 kb on - strand, within Atu5096 at 100.517 kb on - strand, within Atu5096 at 100.517 kb on - strand, within Atu5096 at 100.560 kb on + strand, within Atu5096 at 100.571 kb on + strand, within Atu5096 at 100.615 kb on - strand, within Atu5096 at 100.661 kb on - strand, within Atu5096 at 100.744 kb on - strand, within Atu5096 at 100.775 kb on - strand, within Atu5096 at 100.790 kb on + strand, within Atu5096
Per-strain Table
Position Strand Gene LocusTag Fraction Benthi_leaf_C58C1OD2.0 remove 97,277 + -0.8 97,280 - -0.1 97,280 - +0.0 97,283 + -0.7 97,303 + -0.7 97,306 - -0.4 97,313 + -1.1 97,372 - -0.6 97,379 + -0.2 97,428 - -0.4 97,488 + -0.8 97,488 + -0.2 97,510 - -0.5 97,510 - -0.2 97,523 + +0.1 97,523 + +0.2 97,531 - -0.1 97,533 + +0.1 97,533 + -0.8 97,557 - -0.8 97,605 + -1.4 97,636 + -0.3 97,651 + -0.4 97,684 + -0.3 97,684 + -1.1 97,692 - -0.6 97,692 - -1.0 97,735 + -0.3 97,752 + +0.2 97,822 + -0.1 97,855 - -0.7 97,871 + -0.6 97,896 + -0.4 97,916 + -1.6 98,022 + -1.3 98,139 + -0.3 98,157 - -0.4 98,200 - -0.7 98,293 + -0.6 98,311 - -0.5 98,325 + -0.1 98,330 + -1.5 98,330 + -0.5 98,338 - -1.0 98,418 - Atu5094 0.12 -2.4 98,428 + Atu5094 0.12 -0.4 98,526 + Atu5094 0.19 -0.5 98,536 + Atu5094 0.19 -0.2 98,730 - Atu5094 0.32 -0.8 98,859 + Atu5094 0.40 -0.7 98,888 + Atu5094 0.42 -1.1 98,906 + Atu5094 0.43 -0.2 98,911 + Atu5094 0.43 -0.5 98,913 + Atu5094 0.43 -0.9 98,936 - Atu5094 0.45 -0.4 98,966 + Atu5094 0.47 -1.0 99,036 + Atu5094 0.51 -0.1 99,113 + Atu5094 0.56 +0.2 99,113 + Atu5094 0.56 -1.7 99,185 + Atu5094 0.61 +0.5 99,185 + Atu5094 0.61 -0.7 99,193 - Atu5094 0.61 -0.4 99,249 - Atu5094 0.65 -0.2 99,286 + Atu5094 0.67 -0.1 99,286 + Atu5094 0.67 +0.8 99,286 + Atu5094 0.67 -0.5 99,321 - Atu5094 0.70 +0.2 99,328 + Atu5094 0.70 -0.3 99,336 - Atu5094 0.71 +0.2 99,348 + Atu5094 0.71 -1.6 99,451 - Atu5094 0.78 -0.5 99,471 - Atu5094 0.79 -0.5 99,619 + Atu5094 0.89 -0.1 99,644 + -0.5 99,644 - +0.6 99,652 - -0.7 99,669 + -0.8 99,669 + -0.1 99,687 - -0.1 99,707 - +0.2 99,713 + -1.2 99,949 + Atu5095 0.31 -0.1 99,949 + Atu5095 0.31 -0.2 99,951 + Atu5095 0.32 -0.8 99,951 + Atu5095 0.32 +1.2 99,957 - Atu5095 0.34 -1.0 99,957 - Atu5095 0.34 -0.1 99,959 - Atu5095 0.35 -0.6 99,959 - Atu5095 0.35 -0.5 99,959 - Atu5095 0.35 -0.8 99,986 + Atu5095 0.47 -0.0 99,994 - Atu5095 0.51 -0.1 99,994 - Atu5095 0.51 +0.6 100,004 + Atu5095 0.56 -0.5 100,040 - Atu5095 0.72 +0.3 100,084 + +0.9 100,094 + -0.6 100,102 - +0.3 100,102 - -0.0 100,215 + -0.6 100,260 - -0.2 100,291 - -0.3 100,291 - -0.4 100,338 - -0.9 100,364 + +0.0 100,364 + +0.2 100,373 - -0.4 100,431 - Atu5096 0.16 -0.3 100,433 + Atu5096 0.16 -0.3 100,433 + Atu5096 0.16 -0.4 100,433 + Atu5096 0.16 -0.3 100,433 + Atu5096 0.16 -1.1 100,496 - Atu5096 0.24 -1.0 100,507 - Atu5096 0.25 -0.6 100,517 - Atu5096 0.27 -0.5 100,517 - Atu5096 0.27 -1.3 100,517 - Atu5096 0.27 -0.9 100,560 + Atu5096 0.32 -0.3 100,571 + Atu5096 0.34 -0.7 100,615 - Atu5096 0.39 -0.2 100,661 - Atu5096 0.45 -0.4 100,744 - Atu5096 0.56 +0.6 100,775 - Atu5096 0.60 +0.5 100,790 + Atu5096 0.62 -1.1
Or see this region's nucleotide sequence