Strain Fitness in Agrobacterium fabrum C58 around Atu4426

Experiment: Benthi_leaf_C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benthi_leaf_C58C1OD2.0
1,566,731	+				-0.1
1,566,731	+				-0.5
1,566,777	-				-0.2
1,566,782	-				+0.1
1,566,825	-				-0.5
1,566,849	+		Atu4425	0.10	-0.4
1,566,857	-		Atu4425	0.11	-0.8
1,566,985	-		Atu4425	0.25	-0.8
1,567,159	-		Atu4425	0.44	-2.0
1,567,214	+		Atu4425	0.50	-0.3
1,567,276	+		Atu4425	0.57	-0.8
1,567,276	+		Atu4425	0.57	-0.3
1,567,292	+		Atu4425	0.59	-1.7
1,567,292	+		Atu4425	0.59	+0.3
1,567,323	+		Atu4425	0.62	+0.6
1,567,331	-		Atu4425	0.63	+0.2
1,567,405	-		Atu4425	0.71	+0.1
1,567,721	-				-0.9
1,567,769	+				-0.2
1,567,855	-		Atu4426	0.10	-1.8
1,567,894	+		Atu4426	0.12	+0.1
1,567,902	-		Atu4426	0.13	-0.3
1,567,919	-		Atu4426	0.14	-0.8
1,567,941	+		Atu4426	0.15	-0.2
1,568,055	+		Atu4426	0.21	-0.3
1,568,240	-		Atu4426	0.32	-0.2
1,568,392	+		Atu4426	0.40	-0.4
1,568,400	-		Atu4426	0.41	-0.5
1,568,419	+		Atu4426	0.42	+0.1
1,568,419	+		Atu4426	0.42	-0.6
1,568,419	+		Atu4426	0.42	-0.3
1,568,424	+		Atu4426	0.42	+0.2
1,568,427	-		Atu4426	0.42	+0.0
1,568,427	-		Atu4426	0.42	-0.7
1,568,427	-		Atu4426	0.42	-1.3
1,568,436	+		Atu4426	0.43	-0.5
1,568,437	-		Atu4426	0.43	-0.4
1,568,527	-		Atu4426	0.48	+0.1
1,568,542	-		Atu4426	0.49	-0.1
1,568,565	-		Atu4426	0.50	-0.5
1,568,585	-		Atu4426	0.51	-0.3
1,568,590	-		Atu4426	0.51	-0.4
1,568,599	-		Atu4426	0.52	-1.2
1,568,634	+		Atu4426	0.54	-0.8
1,568,666	-		Atu4426	0.56	-0.6
1,568,849	-		Atu4426	0.66	-0.0
1,568,985	-		Atu4426	0.73	+0.3
1,569,018	+		Atu4426	0.75	-0.6
1,569,049	+		Atu4426	0.77	-0.5
1,569,104	+		Atu4426	0.80	-0.5
1,569,105	+		Atu4426	0.80	-0.3
1,569,105	+		Atu4426	0.80	+0.1
1,569,112	-		Atu4426	0.80	-1.1
1,569,113	-		Atu4426	0.80	+0.0
1,569,113	-		Atu4426	0.80	-0.5
1,569,113	-		Atu4426	0.80	-0.9
1,569,166	+		Atu4426	0.83	-0.4
1,569,267	-		Atu4426	0.89	-0.7
1,569,287	-				+1.6
1,569,403	-				-1.2
1,569,451	+				+0.0
1,569,588	+		Atu4427	0.10	+0.3
1,569,758	+		Atu4427	0.35	+0.6
1,569,783	-		Atu4427	0.38	+0.2
1,569,796	-		Atu4427	0.40	+2.6
1,569,830	+		Atu4427	0.45	-0.1
1,569,831	+		Atu4427	0.45	-0.7
1,569,923	+		Atu4427	0.58	+0.2
1,569,989	+		Atu4427	0.68	+0.0
1,569,992	-		Atu4427	0.68	+0.0
1,569,997	-		Atu4427	0.69	+0.4
1,570,203	+				-0.8
1,570,334	-				+0.0
1,570,347	-				+0.2