Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27980

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
6,227,189	-		PFLU_RS27975	0.32	-1.7
6,227,598	+		PFLU_RS27975	0.67	-3.7
6,227,598	+		PFLU_RS27975	0.67	-2.7
6,227,598	+		PFLU_RS27975	0.67	-3.1
6,227,598	+		PFLU_RS27975	0.67	-2.9
6,227,598	+		PFLU_RS27975	0.67	-2.6
6,227,599	-		PFLU_RS27975	0.67	-1.5
6,227,638	+		PFLU_RS27975	0.70	-4.5
6,227,638	+		PFLU_RS27975	0.70	-1.7
6,227,638	+		PFLU_RS27975	0.70	-0.8
6,227,639	-		PFLU_RS27975	0.70	-2.6
6,227,639	-		PFLU_RS27975	0.70	-3.0
6,227,639	-		PFLU_RS27975	0.70	-1.4
6,227,639	-		PFLU_RS27975	0.70	-1.7
6,227,958	+				-3.6
6,227,958	+				-1.3
6,227,958	+				-1.3
6,227,958	+				-4.5
6,227,958	+				-3.3
6,227,958	+				-4.0
6,227,958	+				-2.8
6,227,959	-				-0.8
6,227,959	-				-1.8
6,227,971	+				-1.3
6,228,012	+				-2.0
6,228,012	+				-2.6
6,228,013	-				+2.1
6,228,013	-				+0.6
6,228,058	+				-1.9
6,228,058	+				-2.6
6,228,058	+				-1.6
6,228,058	+				-2.2
6,228,058	+				-3.6
6,228,058	+				-1.5
6,228,058	+				-0.4
6,228,073	+				-0.1
6,228,073	+				-1.6
6,228,073	+				-0.7
6,228,073	+				-2.9
6,228,118	+				-0.6
6,228,118	+				-1.3
6,228,118	+				-2.7
6,228,118	+				-1.6
6,228,118	+				-2.5
6,228,118	+				-2.3
6,228,118	+				-2.9
6,228,118	+				-2.5
6,228,118	+				-0.8
6,228,118	+				-0.5
6,228,118	+				+0.3
6,228,118	+				-1.5
6,228,119	-				+1.0
6,228,119	-				-0.4
6,228,119	-				+0.1
6,228,119	-				-2.1
6,228,119	-				-0.5
6,228,119	-				-0.6
6,228,119	-				-0.6
6,228,119	-				+0.8
6,228,119	-				-0.0
6,228,129	-				-0.3
6,228,129	-				-0.2
6,228,177	+				-0.4
6,228,177	+				-1.0
6,228,177	+				-0.6
6,228,177	+				-1.1
6,228,177	+				-1.3
6,228,177	+				-2.4
6,228,177	+				+0.5
6,228,178	-				-1.0
6,228,178	-				-1.3
6,228,178	-				+0.5
6,228,178	-				-1.2
6,228,178	-				+0.5
6,228,178	-				-2.0
6,228,178	-				-1.1
6,228,178	-				-0.1
6,228,178	-				-0.1
6,228,178	-				+0.3
6,228,184	+				-0.1
6,228,184	+				-1.0
6,228,184	+				-1.9
6,228,184	+				-1.8
6,228,184	+				-1.3
6,228,184	+				-1.0
6,228,185	-				-3.0
6,228,185	-				-1.8
6,228,185	-				+0.8
6,228,185	-				+0.9
6,228,185	-				-0.0
6,228,185	-				-0.8
6,228,185	-				-0.1
6,228,185	-				-0.1
6,228,186	+				-2.5
6,228,186	+				-2.6
6,228,186	+				-0.8
6,228,186	+				-2.3
6,228,187	-				-1.5
6,228,187	-				-1.3
6,228,187	-				+0.5
6,228,187	-				-1.1
6,228,187	-				-1.0
6,228,187	-				+0.5
6,228,187	-				-0.1
6,228,187	-				+0.8
6,228,187	-				-0.1
6,228,297	+				-1.2
6,228,297	+				-1.6
6,228,297	+				-1.0
6,228,297	+				-0.1
6,228,297	+				-0.5
6,228,298	-				-1.0
6,228,298	-				-1.6
6,228,315	+				-1.3
6,228,316	-				-0.1
6,228,360	+				-0.1
6,228,360	+				-1.5
6,228,361	-				-1.6
6,228,361	-				-1.7
6,228,361	-				-0.1
6,228,361	-				+0.9
6,228,361	-				+0.2
6,228,381	+		PFLU_RS27980	0.10	-0.7
6,228,381	+		PFLU_RS27980	0.10	-2.0
6,228,382	-		PFLU_RS27980	0.10	-1.8
6,228,523	+		PFLU_RS27980	0.17	-0.6
6,228,523	+		PFLU_RS27980	0.17	-0.6
6,228,524	-		PFLU_RS27980	0.17	-2.9
6,228,954	+		PFLU_RS27980	0.39	-1.3
6,228,954	+		PFLU_RS27980	0.39	-2.7
6,228,954	+		PFLU_RS27980	0.39	-3.5
6,228,954	+		PFLU_RS27980	0.39	-2.8
6,228,954	+		PFLU_RS27980	0.39	+0.8
6,228,954	+		PFLU_RS27980	0.39	-4.1
6,228,954	+		PFLU_RS27980	0.39	+0.1
6,228,954	+		PFLU_RS27980	0.39	-1.5
6,228,954	+		PFLU_RS27980	0.39	+0.5
6,228,954	+		PFLU_RS27980	0.39	-3.3
6,228,954	+		PFLU_RS27980	0.39	-1.2
6,228,954	+		PFLU_RS27980	0.39	-2.5
6,228,955	-		PFLU_RS27980	0.39	-1.4
6,228,955	-		PFLU_RS27980	0.39	-1.0
6,228,955	-		PFLU_RS27980	0.39	-0.2
6,228,955	-		PFLU_RS27980	0.39	-1.2
6,228,955	-		PFLU_RS27980	0.39	-1.7
6,228,955	-		PFLU_RS27980	0.39	-0.7
6,228,955	-		PFLU_RS27980	0.39	-3.3
6,228,955	-		PFLU_RS27980	0.39	-1.1
6,228,955	-		PFLU_RS27980	0.39	-0.1
6,228,955	-		PFLU_RS27980	0.39	+1.5
6,228,955	-		PFLU_RS27980	0.39	-2.8
6,228,955	-		PFLU_RS27980	0.39	-1.3
6,228,955	-		PFLU_RS27980	0.39	-0.8
6,228,955	-		PFLU_RS27980	0.39	-1.2
6,228,955	-		PFLU_RS27980	0.39	-2.0
6,228,955	-		PFLU_RS27980	0.39	-2.3
6,228,955	-		PFLU_RS27980	0.39	-0.7
6,228,955	-		PFLU_RS27980	0.39	-3.2
6,228,955	-		PFLU_RS27980	0.39	-2.1
6,228,955	-		PFLU_RS27980	0.39	-2.2
6,228,998	+		PFLU_RS27980	0.41	-2.1
6,229,037	-		PFLU_RS27980	0.43	-2.2
6,229,037	-		PFLU_RS27980	0.43	-1.5
6,229,037	-		PFLU_RS27980	0.43	-2.2
6,229,126	+		PFLU_RS27980	0.48	-1.1
6,229,126	+		PFLU_RS27980	0.48	-0.9
6,229,127	-		PFLU_RS27980	0.48	-1.9
6,229,127	-		PFLU_RS27980	0.48	-2.5
6,229,127	-		PFLU_RS27980	0.48	-1.3
6,229,127	-		PFLU_RS27980	0.48	-2.0
6,229,127	-		PFLU_RS27980	0.48	-0.5
6,229,179	+		PFLU_RS27980	0.50	-1.3
6,229,180	-		PFLU_RS27980	0.50	-1.2
6,229,180	-		PFLU_RS27980	0.50	+0.5
6,229,233	+		PFLU_RS27980	0.53	+0.5
6,229,233	+		PFLU_RS27980	0.53	-2.4
6,229,233	+		PFLU_RS27980	0.53	-3.0
6,229,234	-		PFLU_RS27980	0.53	-2.3
6,229,239	+		PFLU_RS27980	0.53	-3.1
6,229,239	+		PFLU_RS27980	0.53	+0.5
6,229,240	-		PFLU_RS27980	0.53	-0.3
6,229,240	-		PFLU_RS27980	0.53	-3.1
6,229,240	-		PFLU_RS27980	0.53	+0.4
6,229,275	+		PFLU_RS27980	0.55	-3.8
6,229,276	-		PFLU_RS27980	0.55	-2.4
6,229,334	+		PFLU_RS27980	0.58	-2.3
6,229,334	+		PFLU_RS27980	0.58	-2.0
6,229,335	-		PFLU_RS27980	0.58	-2.8
6,229,335	-		PFLU_RS27980	0.58	-0.4
6,229,335	-		PFLU_RS27980	0.58	-0.4
6,229,335	-		PFLU_RS27980	0.58	-1.6
6,229,335	-		PFLU_RS27980	0.58	-0.7
6,229,391	-		PFLU_RS27980	0.61	-2.0
6,229,675	-		PFLU_RS27980	0.75	-0.3
6,229,675	-		PFLU_RS27980	0.75	-2.8
6,229,675	-		PFLU_RS27980	0.75	-2.1
6,229,675	-		PFLU_RS27980	0.75	-2.3
6,229,701	+		PFLU_RS27980	0.76	-2.5
6,229,701	+		PFLU_RS27980	0.76	-2.0
6,229,701	+		PFLU_RS27980	0.76	-1.4
6,229,701	+		PFLU_RS27980	0.76	-2.9
6,229,701	+		PFLU_RS27980	0.76	-0.1
6,229,701	+		PFLU_RS27980	0.76	-0.2
6,229,702	-		PFLU_RS27980	0.76	-1.8
6,229,702	-		PFLU_RS27980	0.76	+1.1
6,229,702	-		PFLU_RS27980	0.76	-2.8
6,229,702	-		PFLU_RS27980	0.76	-3.4
6,229,702	-		PFLU_RS27980	0.76	-1.0
6,229,702	-		PFLU_RS27980	0.76	-2.4
6,229,702	-		PFLU_RS27980	0.76	-0.6
6,229,702	-		PFLU_RS27980	0.76	+0.5
6,229,801	-		PFLU_RS27980	0.81	-1.8
6,229,801	-		PFLU_RS27980	0.81	-2.4
6,229,801	-		PFLU_RS27980	0.81	-0.4
6,229,830	+		PFLU_RS27980	0.83	-2.5
6,229,830	+		PFLU_RS27980	0.83	-2.5
6,229,830	+		PFLU_RS27980	0.83	-1.5
6,229,830	+		PFLU_RS27980	0.83	-2.4
6,229,830	+		PFLU_RS27980	0.83	-2.9
6,229,830	+		PFLU_RS27980	0.83	-1.4
6,229,830	+		PFLU_RS27980	0.83	-1.8
6,229,831	-		PFLU_RS27980	0.83	-2.5
6,229,884	+		PFLU_RS27980	0.86	-1.3
6,229,885	-		PFLU_RS27980	0.86	-0.8
6,229,885	-		PFLU_RS27980	0.86	-2.4
6,229,909	+		PFLU_RS27980	0.87	-2.6
6,229,933	-		PFLU_RS27980	0.88	-1.6
6,229,968	+		PFLU_RS27980	0.90	+1.5
6,229,989	+				-0.4
6,229,989	+				-2.6
6,229,989	+				-3.2
6,229,989	+				-0.1
6,229,989	+				-2.4
6,229,989	+				-1.0
6,229,989	+				-1.7
6,229,989	+				-2.8
6,229,989	+				-2.4
6,229,989	+				-2.7
6,229,989	+				-4.0
6,229,989	+				-0.8
6,229,989	+				-1.7
6,229,989	+				-3.4
6,229,989	+				-2.0
6,229,989	+				-3.4
6,229,989	+				-3.1
6,229,989	+				-2.5
6,229,989	+				-1.2
6,229,990	-				-2.5
6,229,990	-				-2.4
6,229,990	-				-0.0
6,229,990	-				-1.7
6,229,990	-				-2.6
6,229,990	-				-0.7
6,229,990	-				-1.4
6,229,990	-				-3.1
6,229,990	-				-1.1
6,229,990	-				-2.8
6,229,990	-				-0.9
6,229,990	-				+1.5
6,229,990	-				-1.9
6,229,990	-				-3.2
6,229,990	-				-1.6
6,229,990	-				-1.1
6,229,990	-				-1.8
6,229,990	-				-2.3
6,229,990	-				-0.8
6,229,990	-				-0.5
6,229,992	+				-1.7
6,229,992	+				-2.8
6,229,992	+				-0.8
6,229,993	-				-1.8
6,230,008	+				-1.7
6,230,008	+				-2.4
6,230,009	-				-2.8
6,230,009	-				-3.9
6,230,009	-				-0.1
6,230,106	+				-2.4
6,230,106	+				-2.1
6,230,106	+				-2.8
6,230,106	+				-0.5
6,230,106	+				-2.2
6,230,106	+				-0.8
6,230,106	+				-3.0
6,230,106	+				-1.8
6,230,106	+				-2.9
6,230,106	+				-2.4
6,230,106	+				-3.6
6,230,106	+				-4.1
6,230,106	+				+1.5
6,230,107	-				-1.1
6,230,107	-				-1.5
6,230,107	-				-1.3
6,230,107	-				-3.4
6,230,107	-				-2.0
6,230,107	-				-2.7
6,230,107	-				-1.3
6,230,107	-				-1.7
6,230,107	-				-1.0
6,230,107	-				-1.3
6,230,107	-				-1.7
6,230,107	-				-2.0
6,230,107	-				+0.3
6,230,150	+				-2.2
6,230,150	+				-1.8
6,230,150	+				-2.4
6,230,150	+				-1.7
6,230,150	+				-2.0
6,230,150	+				-2.5
6,230,150	+				-1.5
6,230,151	-				-2.6
6,230,151	-				-1.0
6,230,151	-				-0.7
6,230,151	-				-2.7
6,230,151	-				-1.5
6,230,151	-				-0.7
6,230,152	+				-2.0
6,230,152	+				-2.1
6,230,152	+				-1.5
6,230,153	-				-1.0
6,230,153	-				-0.8
6,230,153	-				-0.4
6,230,153	-				-0.8
6,230,153	-				-3.0
6,230,153	-				-1.2
6,230,260	+				-1.0
6,230,260	+				-0.5
6,230,260	+				-0.5
6,230,260	+				+1.1
6,230,260	+				+0.5
6,230,260	+				-1.0
6,230,260	+				-1.7
6,230,261	-				+0.5
6,230,261	-				+0.6
6,230,261	-				+0.3
6,230,261	-				+1.5
6,230,261	-				+2.1
6,230,261	-				-0.4
6,230,262	+				-1.7
6,230,262	+				-0.3
6,230,262	+				+0.3
6,230,262	+				-0.6
6,230,262	+				-0.8
6,230,262	+				-3.8
6,230,262	+				-1.3
6,230,262	+				-3.7
6,230,263	-				+0.2
6,230,263	-				+0.0
6,230,314	+				-1.0
6,230,314	+				-1.0
6,230,315	-				-0.7
6,230,315	-				-1.5
6,230,365	+				-0.1
6,230,365	+				-2.0
6,230,365	+				-3.2
6,230,365	+				-1.2
6,230,365	+				-0.7
6,230,366	-				-1.9
6,230,372	+				-2.3
6,230,372	+				-2.4
6,230,372	+				-1.8
6,230,373	-				-2.3
6,230,378	+				-0.5
6,230,378	+				-2.4
6,230,378	+				-1.5
6,230,379	-				-1.3
6,230,406	-				-2.4
6,230,441	+				-0.1
6,230,441	+				+4.5
6,230,441	+				+0.1
6,230,441	+				-2.9
6,230,441	+				-1.7
6,230,441	+				-0.8
6,230,442	-				+0.9
6,230,487	+				-1.6
6,230,487	+				-2.0
6,230,488	-				-2.2
6,230,500	+				-2.8
6,230,500	+				-2.8
6,230,500	+				-2.7
6,230,500	+				-2.9
6,230,500	+				-3.0
6,230,500	+				-2.3
6,230,500	+				-3.0
6,230,500	+				-3.4
6,230,500	+				-2.7
6,230,500	+				-2.1
6,230,500	+				-1.8
6,230,500	+				-2.4
6,230,500	+				-1.8
6,230,500	+				-0.1
6,230,500	+				-2.9
6,230,500	+				-3.7
6,230,500	+				-2.8
6,230,500	+				-3.3
6,230,500	+				-1.3
6,230,500	+				-1.5
6,230,500	+				-2.7
6,230,500	+				-0.1
6,230,500	+				-3.4
6,230,500	+				-1.8
6,230,500	+				-1.8
6,230,500	+				-2.2
6,230,500	+				-2.0
6,230,500	+				-1.0
6,230,500	+				-0.8
6,230,500	+				-0.8
6,230,501	-				-1.1
6,230,501	-				-1.9
6,230,501	-				-1.3
6,230,501	-				-2.4
6,230,501	-				-1.3
6,230,501	-				-2.4
6,230,501	-				-1.8
6,230,501	-				-1.8
6,230,501	-				-2.2
6,230,501	-				-1.3
6,230,501	-				-2.7
6,230,501	-				-2.6
6,230,501	-				-2.9
6,230,501	-				-2.2
6,230,501	-				-1.7
6,230,501	-				-3.0
6,230,501	-				-1.0
6,230,501	-				-1.2
6,230,501	-				-2.5
6,230,501	-				-1.3
6,230,501	-				-0.1
6,230,501	-				-2.7
6,230,501	-				-1.8
6,230,501	-				-2.5
6,230,501	-				-2.7
6,230,501	-				+0.5
6,230,501	-				-0.1
6,230,501	-				-2.0
6,230,501	-				-0.6
6,230,501	-				-1.2
6,230,501	-				-2.2
6,230,501	-				+1.2
6,230,501	-				-1.1
6,230,501	-				-1.8
6,230,501	-				+1.5
6,230,501	-				-2.4
6,230,501	-				+0.5
6,230,501	-				-2.0
6,230,501	-				-1.5
6,230,501	-				-1.6
6,230,501	-				-1.1
6,230,501	-				-2.0
6,230,528	+				-0.8
6,230,528	+				+0.2
6,230,529	-				-2.8
6,230,647	+		PFLU_RS27985	0.24	-1.5
6,230,647	+		PFLU_RS27985	0.24	-2.7
6,230,647	+		PFLU_RS27985	0.24	-0.8
6,230,648	-		PFLU_RS27985	0.24	-1.1
6,230,648	-		PFLU_RS27985	0.24	-3.1
6,230,648	-		PFLU_RS27985	0.24	-0.8
6,230,648	-		PFLU_RS27985	0.24	-2.8
6,230,670	+		PFLU_RS27985	0.28	+0.5
6,230,671	-		PFLU_RS27985	0.28	-1.8
6,230,671	-		PFLU_RS27985	0.28	-1.1
6,230,740	-		PFLU_RS27985	0.40	-1.3
6,230,902	+		PFLU_RS27985	0.67	-2.5
6,230,902	+		PFLU_RS27985	0.67	-1.3
6,230,902	+		PFLU_RS27985	0.67	-1.1
6,230,902	+		PFLU_RS27985	0.67	-1.5
6,230,902	+		PFLU_RS27985	0.67	-3.6
6,230,902	+		PFLU_RS27985	0.67	-2.2
6,230,903	-		PFLU_RS27985	0.67	-1.3
6,230,903	-		PFLU_RS27985	0.67	-0.5
6,230,903	-		PFLU_RS27985	0.67	-1.3
6,230,903	-		PFLU_RS27985	0.67	+0.5
6,230,903	-		PFLU_RS27985	0.67	-0.3
6,230,993	+		PFLU_RS27985	0.82	-2.0
6,230,993	+		PFLU_RS27985	0.82	-1.3
6,230,993	+		PFLU_RS27985	0.82	-1.7
6,230,993	+		PFLU_RS27985	0.82	-2.2
6,230,993	+		PFLU_RS27985	0.82	-1.1
6,230,994	-		PFLU_RS27985	0.83	-1.4
6,230,994	-		PFLU_RS27985	0.83	-2.0
6,230,994	-		PFLU_RS27985	0.83	-0.3
6,230,994	-		PFLU_RS27985	0.83	-2.8
6,230,994	-		PFLU_RS27985	0.83	-3.6
6,231,055	+				-2.4
6,231,061	+				-2.2
6,231,061	+				-2.8
6,231,061	+				-2.5
6,231,061	+				-2.9
6,231,061	+				-3.5
6,231,061	+				-2.9
6,231,061	+				-1.7
6,231,061	+				-1.3
6,231,061	+				-1.5
6,231,062	-				-1.3
6,231,062	-				-2.4
6,231,062	-				-0.1
6,231,062	-				-1.3
6,231,062	-				-0.7
6,231,062	-				-1.7
6,231,062	-				-0.5
6,231,062	-				-0.5
6,231,062	-				-1.1
6,231,062	-				+0.3
6,231,094	+				+2.0
6,231,094	+				+2.5
6,231,094	+				-0.1
6,231,094	+				+2.5
6,231,094	+				-0.9
6,231,094	+				-0.2
6,231,094	+				+0.7
6,231,095	-				-1.7
6,231,095	-				-0.1
6,231,095	-				-1.1
6,231,095	-				-0.7
6,231,095	-				-1.5
6,231,095	-				-2.0
6,231,103	+				+1.8
6,231,103	+				+1.7
6,231,103	+				+0.9
6,231,103	+				+0.4
6,231,103	+				+2.2
6,231,103	+				+0.6
6,231,103	+				+0.0
6,231,103	+				+2.8
6,231,103	+				+1.5
6,231,103	+				-0.4
6,231,103	+				+0.5
6,231,103	+				+0.0
6,231,103	+				+0.3
6,231,103	+				+0.4
6,231,103	+				-0.5
6,231,103	+				-1.1
6,231,103	+				+1.1
6,231,103	+				+0.5
6,231,104	-				-3.3
6,231,104	-				-1.5
6,231,104	-				+0.1
6,231,104	-				-3.3
6,231,104	-				-2.3
6,231,104	-				-2.1
6,231,104	-				-3.0
6,231,104	-				-2.1
6,231,104	-				+1.5
6,231,104	-				-0.5
6,231,104	-				-2.0
6,231,104	-				-1.8
6,231,104	-				-3.0
6,231,104	-				-1.1
6,231,104	-				-2.3
6,231,104	-				-1.5
6,231,104	-				-1.7
6,231,104	-				-2.0
6,231,105	+				+1.0
6,231,105	+				+1.2
6,231,106	-				-0.5
6,231,106	-				-1.1
6,231,106	-				-1.3