Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20205 and BPHYT_RS20210 overlap by 1 nucleotides BPHYT_RS20210 and BPHYT_RS20215 are separated by 474 nucleotides BPHYT_RS20215 and BPHYT_RS20220 are separated by 128 nucleotides BPHYT_RS20220 and BPHYT_RS20225 are separated by 87 nucleotides
BPHYT_RS20205: BPHYT_RS20205 - alcohol dehydrogenase, at 78,863 to 80,023
_RS20205
BPHYT_RS20210: BPHYT_RS20210 - antibiotic biosynthesis monooxygenase, at 80,023 to 80,331
_RS20210
BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477
_RS20215
BPHYT_RS20220: BPHYT_RS20220 - antibiotic synthesis protein MbtH, at 81,606 to 81,845
_RS20220
BPHYT_RS20225: BPHYT_RS20225 - taurine catabolism dioxygenase tauD/tfdA, at 81,933 to 82,967
_RS20225
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.046 kb on + strand at 80.167 kb on + strand, within BPHYT_RS20210 at 80.318 kb on + strand at 80.319 kb on - strand at 80.319 kb on - strand at 80.355 kb on + strand at 80.426 kb on + strand at 80.506 kb on + strand at 80.507 kb on - strand at 80.685 kb on - strand at 80.722 kb on + strand at 80.723 kb on - strand at 80.806 kb on - strand at 80.806 kb on - strand at 81.094 kb on + strand, within BPHYT_RS20215 at 81.094 kb on + strand, within BPHYT_RS20215 at 81.095 kb on - strand, within BPHYT_RS20215 at 81.507 kb on + strand at 81.664 kb on - strand, within BPHYT_RS20220 at 81.693 kb on + strand, within BPHYT_RS20220 at 81.933 kb on - strand at 82.029 kb on + strand at 82.097 kb on - strand, within BPHYT_RS20225 at 82.176 kb on + strand, within BPHYT_RS20225 at 82.221 kb on + strand, within BPHYT_RS20225 at 82.222 kb on - strand, within BPHYT_RS20225 at 82.222 kb on - strand, within BPHYT_RS20225 at 82.279 kb on - strand, within BPHYT_RS20225 at 82.302 kb on - strand, within BPHYT_RS20225
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 80,046 + -0.0 80,167 + BPHYT_RS20210 0.47 +0.2 80,318 + +0.6 80,319 - +1.2 80,319 - +0.7 80,355 + -1.1 80,426 + +0.3 80,506 + -0.3 80,507 - -0.4 80,685 - -0.5 80,722 + +0.3 80,723 - -0.6 80,806 - -0.8 80,806 - -0.7 81,094 + BPHYT_RS20215 0.43 +2.0 81,094 + BPHYT_RS20215 0.43 -0.3 81,095 - BPHYT_RS20215 0.43 +0.4 81,507 + +1.2 81,664 - BPHYT_RS20220 0.24 -0.2 81,693 + BPHYT_RS20220 0.36 +0.3 81,933 - +0.1 82,029 + +0.2 82,097 - BPHYT_RS20225 0.16 +0.1 82,176 + BPHYT_RS20225 0.23 +0.5 82,221 + BPHYT_RS20225 0.28 +0.3 82,222 - BPHYT_RS20225 0.28 -2.2 82,222 - BPHYT_RS20225 0.28 -1.1 82,279 - BPHYT_RS20225 0.33 -1.2 82,302 - BPHYT_RS20225 0.36 +0.7
Or see this region's nucleotide sequence