Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04215 and BPHYT_RS04220 are separated by 253 nucleotides BPHYT_RS04220 and BPHYT_RS04225 overlap by 4 nucleotides BPHYT_RS04225 and BPHYT_RS04230 overlap by 14 nucleotides
BPHYT_RS04215: BPHYT_RS04215 - hypothetical protein, at 966,322 to 967,734
_RS04215
BPHYT_RS04220: BPHYT_RS04220 - hypothetical protein, at 967,988 to 968,566
_RS04220
BPHYT_RS04225: BPHYT_RS04225 - Holliday junction resolvase, at 968,563 to 969,003
_RS04225
BPHYT_RS04230: BPHYT_RS04230 - uracil phosphoribosyltransferase, at 968,990 to 969,529
_RS04230
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 967.190 kb on - strand, within BPHYT_RS04215 at 967.336 kb on + strand, within BPHYT_RS04215 at 967.336 kb on + strand, within BPHYT_RS04215 at 967.820 kb on + strand at 967.820 kb on + strand at 967.820 kb on + strand at 967.820 kb on + strand at 967.820 kb on + strand at 967.821 kb on - strand at 967.821 kb on - strand at 967.821 kb on - strand at 967.876 kb on + strand at 967.877 kb on - strand at 967.888 kb on + strand at 967.888 kb on + strand at 967.987 kb on + strand at 967.987 kb on + strand at 967.987 kb on + strand at 967.987 kb on + strand at 967.988 kb on - strand at 968.081 kb on + strand, within BPHYT_RS04220 at 968.213 kb on + strand, within BPHYT_RS04220 at 968.213 kb on + strand, within BPHYT_RS04220 at 968.279 kb on + strand, within BPHYT_RS04220 at 968.969 kb on + strand at 969.051 kb on - strand, within BPHYT_RS04230 at 969.203 kb on + strand, within BPHYT_RS04230 at 969.203 kb on + strand, within BPHYT_RS04230 at 969.204 kb on - strand, within BPHYT_RS04230 at 969.296 kb on + strand, within BPHYT_RS04230 at 969.296 kb on + strand, within BPHYT_RS04230 at 969.297 kb on - strand, within BPHYT_RS04230 at 969.335 kb on + strand, within BPHYT_RS04230 at 969.341 kb on + strand, within BPHYT_RS04230 at 969.342 kb on - strand, within BPHYT_RS04230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 967,190 - BPHYT_RS04215 0.61 -0.1 967,336 + BPHYT_RS04215 0.72 +2.3 967,336 + BPHYT_RS04215 0.72 -0.5 967,820 + +0.3 967,820 + +0.5 967,820 + -0.1 967,820 + +0.4 967,820 + +0.0 967,821 - +0.4 967,821 - +0.1 967,821 - -0.5 967,876 + -0.1 967,877 - +1.1 967,888 + +0.1 967,888 + +0.2 967,987 + +1.3 967,987 + +0.4 967,987 + -0.8 967,987 + -0.0 967,988 - -0.2 968,081 + BPHYT_RS04220 0.16 -1.0 968,213 + BPHYT_RS04220 0.39 -1.1 968,213 + BPHYT_RS04220 0.39 +3.5 968,279 + BPHYT_RS04220 0.50 -0.3 968,969 + -0.3 969,051 - BPHYT_RS04230 0.11 +1.2 969,203 + BPHYT_RS04230 0.39 -2.6 969,203 + BPHYT_RS04230 0.39 +0.0 969,204 - BPHYT_RS04230 0.40 -1.4 969,296 + BPHYT_RS04230 0.57 -0.7 969,296 + BPHYT_RS04230 0.57 -0.3 969,297 - BPHYT_RS04230 0.57 -0.4 969,335 + BPHYT_RS04230 0.64 -0.9 969,341 + BPHYT_RS04230 0.65 -0.1 969,342 - BPHYT_RS04230 0.65 +0.6
Or see this region's nucleotide sequence