Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09955

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
2,198,166	-		PFLU_RS09950	0.67	-0.0
2,198,216	+		PFLU_RS09950	0.70	+1.6
2,198,216	+		PFLU_RS09950	0.70	-3.5
2,198,216	+		PFLU_RS09950	0.70	-0.0
2,198,216	+		PFLU_RS09950	0.70	-1.0
2,198,216	+		PFLU_RS09950	0.70	+0.4
2,198,216	+		PFLU_RS09950	0.70	-0.0
2,198,216	+		PFLU_RS09950	0.70	-0.9
2,198,216	+		PFLU_RS09950	0.70	-1.9
2,198,216	+		PFLU_RS09950	0.70	-1.0
2,198,216	+		PFLU_RS09950	0.70	-0.4
2,198,216	+		PFLU_RS09950	0.70	+0.1
2,198,217	-		PFLU_RS09950	0.70	-1.2
2,198,217	-		PFLU_RS09950	0.70	+1.2
2,198,217	-		PFLU_RS09950	0.70	-0.4
2,198,217	-		PFLU_RS09950	0.70	-1.0
2,198,217	-		PFLU_RS09950	0.70	+0.8
2,198,217	-		PFLU_RS09950	0.70	-1.3
2,198,217	-		PFLU_RS09950	0.70	+1.0
2,198,217	-		PFLU_RS09950	0.70	+0.1
2,198,217	-		PFLU_RS09950	0.70	-0.0
2,198,217	-		PFLU_RS09950	0.70	-1.9
2,198,217	-		PFLU_RS09950	0.70	+0.5
2,198,217	-		PFLU_RS09950	0.70	-0.4
2,198,217	-		PFLU_RS09950	0.70	+1.6
2,198,217	-		PFLU_RS09950	0.70	+0.6
2,198,217	-		PFLU_RS09950	0.70	-1.0
2,198,217	-		PFLU_RS09950	0.70	-2.3
2,198,217	-		PFLU_RS09950	0.70	-0.0
2,198,219	+		PFLU_RS09950	0.70	+1.2
2,198,219	+		PFLU_RS09950	0.70	+0.2
2,198,219	+		PFLU_RS09950	0.70	+1.7
2,198,219	+		PFLU_RS09950	0.70	-1.1
2,198,219	+		PFLU_RS09950	0.70	+0.9
2,198,219	+		PFLU_RS09950	0.70	-0.9
2,198,219	+		PFLU_RS09950	0.70	+1.4
2,198,219	+		PFLU_RS09950	0.70	-0.4
2,198,219	+		PFLU_RS09950	0.70	-2.0
2,198,220	-		PFLU_RS09950	0.70	-0.0
2,198,220	-		PFLU_RS09950	0.70	+1.3
2,198,220	-		PFLU_RS09950	0.70	-2.0
2,198,220	-		PFLU_RS09950	0.70	+0.6
2,198,220	-		PFLU_RS09950	0.70	-1.9
2,198,220	-		PFLU_RS09950	0.70	+1.7
2,198,220	-		PFLU_RS09950	0.70	-1.0
2,198,220	-		PFLU_RS09950	0.70	-2.7
2,198,220	-		PFLU_RS09950	0.70	+0.3
2,198,220	-		PFLU_RS09950	0.70	-0.4
2,198,220	-		PFLU_RS09950	0.70	+0.4
2,198,377	-		PFLU_RS09950	0.79	-0.7
2,198,410	-		PFLU_RS09950	0.81	-1.2
2,198,498	+		PFLU_RS09950	0.85	+1.6
2,198,498	+		PFLU_RS09950	0.85	+0.5
2,198,499	-		PFLU_RS09950	0.86	+0.4
2,198,558	+		PFLU_RS09950	0.89	+0.3
2,198,558	+		PFLU_RS09950	0.89	+0.1
2,198,558	+		PFLU_RS09950	0.89	-2.0
2,198,559	-		PFLU_RS09950	0.89	+0.7
2,198,559	-		PFLU_RS09950	0.89	-0.2
2,198,559	-		PFLU_RS09950	0.89	-1.9
2,198,559	-		PFLU_RS09950	0.89	+0.1
2,198,559	-		PFLU_RS09950	0.89	+0.6
2,198,559	-		PFLU_RS09950	0.89	+0.9
2,198,572	+		PFLU_RS09950	0.90	-3.2
2,198,572	+		PFLU_RS09950	0.90	+1.5
2,198,573	-		PFLU_RS09950	0.90	-2.5
2,198,573	-		PFLU_RS09950	0.90	+1.8
2,198,597	+				+0.4
2,198,597	+				-1.1
2,198,597	+				+0.3
2,198,597	+				-1.5
2,198,597	+				-2.2
2,198,598	-				-0.2
2,198,598	-				-1.9
2,198,598	-				-2.0
2,198,598	-				+1.3
2,198,600	+				+0.6
2,198,600	+				+1.2
2,198,600	+				+2.9
2,198,600	+				-1.6
2,198,600	+				-2.4
2,198,600	+				+0.8
2,198,601	-				+0.4
2,198,601	-				-1.3
2,198,601	-				+0.2
2,198,601	-				+0.2
2,198,601	-				+0.9
2,198,601	-				-0.8
2,198,601	-				-1.0
2,198,601	-				+1.6
2,198,636	+				-0.6
2,198,637	-				-0.8
2,198,660	+				-2.0
2,198,660	+				-1.8
2,198,660	+				-2.8
2,198,660	+				-1.9
2,198,660	+				-0.4
2,198,661	-				+0.7
2,198,661	-				+0.2
2,198,661	-				-0.4
2,198,661	-				-1.4
2,198,661	-				-1.3
2,198,661	-				+0.7
2,198,661	-				+0.6
2,198,661	-				+0.2
2,198,661	-				+0.2
2,198,687	+				+0.6
2,198,687	+				-0.4
2,198,687	+				-1.2
2,198,687	+				-0.0
2,198,687	+				+1.6
2,198,687	+				-0.5
2,198,687	+				+0.1
2,198,687	+				-0.6
2,198,687	+				-2.6
2,198,687	+				+1.6
2,198,687	+				+2.0
2,198,687	+				-2.2
2,198,688	-				+0.6
2,198,688	-				+1.2
2,198,688	-				-1.8
2,198,688	-				-1.6
2,198,688	-				-2.0
2,198,688	-				+1.0
2,198,688	-				+2.2
2,198,688	-				+0.3
2,198,688	-				-0.7
2,198,688	-				+0.2
2,198,690	+				-1.2
2,198,690	+				-1.0
2,198,690	+				-1.4
2,198,691	-				+0.7
2,198,691	-				+0.2
2,198,691	-				-1.8
2,198,691	-				+1.0
2,198,691	-				-1.6
2,198,691	-				-2.4
2,198,728	+				-0.1
2,198,729	-				-0.2
2,198,737	+				-0.4
2,198,738	-				+1.9
2,198,804	-				-1.8
2,198,812	-				+0.8
2,198,812	-				+1.4
2,198,846	+				-0.0
2,198,847	-				-0.3
2,198,900	+				-2.0
2,198,900	+				-2.4
2,198,915	-				-0.8
2,198,915	-				-2.0
2,198,966	+				+0.9
2,198,966	+				+0.0
2,198,967	-				-1.4
2,198,967	-				+0.3
2,198,981	-				+1.7
2,198,981	-				+1.1
2,199,015	+				+0.6
2,199,015	+				+1.1
2,199,015	+				-1.2
2,199,015	+				+1.8
2,199,015	+				-0.5
2,199,015	+				-0.8
2,199,015	+				+0.8
2,199,015	+				+0.2
2,199,015	+				-1.4
2,199,015	+				-0.3
2,199,016	-				+0.8
2,199,016	-				-1.6
2,199,016	-				+1.6
2,199,016	-				+2.6
2,199,016	-				+1.6
2,199,016	-				+1.6
2,199,016	-				-0.6
2,199,065	+				+2.0
2,199,066	-				-0.4
2,199,066	-				+0.2
2,199,066	-				-1.6
2,199,066	-				+1.8
2,199,066	-				-1.2
2,199,095	+		PFLU_RS09955	0.10	+1.4
2,199,095	+		PFLU_RS09955	0.10	+0.2
2,199,095	+		PFLU_RS09955	0.10	+1.3
2,199,095	+		PFLU_RS09955	0.10	+0.3
2,199,096	-		PFLU_RS09955	0.11	+2.7
2,199,096	-		PFLU_RS09955	0.11	-1.2
2,199,096	-		PFLU_RS09955	0.11	-1.8
2,199,127	+		PFLU_RS09955	0.15	+1.4
2,199,198	-		PFLU_RS09955	0.24	+0.8
2,199,400	+		PFLU_RS09955	0.52	+0.5
2,199,401	-		PFLU_RS09955	0.52	-0.9
2,199,401	-		PFLU_RS09955	0.52	+2.6
2,199,435	+		PFLU_RS09955	0.57	+3.3
2,199,435	+		PFLU_RS09955	0.57	+1.3
2,199,463	+		PFLU_RS09955	0.61	+1.2
2,199,464	-		PFLU_RS09955	0.61	+1.3
2,199,464	-		PFLU_RS09955	0.61	+1.6
2,199,464	-		PFLU_RS09955	0.61	-0.0
2,199,464	-		PFLU_RS09955	0.61	-0.4
2,199,464	-		PFLU_RS09955	0.61	+2.2
2,199,490	-		PFLU_RS09955	0.64	+1.7
2,199,490	-		PFLU_RS09955	0.64	+1.4
2,199,506	+		PFLU_RS09955	0.67	-2.6
2,199,506	+		PFLU_RS09955	0.67	+1.0
2,199,506	+		PFLU_RS09955	0.67	+0.6
2,199,507	-		PFLU_RS09955	0.67	+0.9
2,199,507	-		PFLU_RS09955	0.67	+1.2
2,199,507	-		PFLU_RS09955	0.67	+0.7
2,199,604	+		PFLU_RS09955	0.80	+3.0
2,199,604	+		PFLU_RS09955	0.80	-0.1
2,199,604	+		PFLU_RS09955	0.80	+1.2
2,199,604	+		PFLU_RS09955	0.80	-0.4
2,199,604	+		PFLU_RS09955	0.80	+1.0
2,199,604	+		PFLU_RS09955	0.80	-1.6
2,199,604	+		PFLU_RS09955	0.80	+0.3
2,199,605	-		PFLU_RS09955	0.80	-2.6
2,199,605	-		PFLU_RS09955	0.80	+0.9
2,199,605	-		PFLU_RS09955	0.80	+1.7
2,199,605	-		PFLU_RS09955	0.80	-0.4
2,199,605	-		PFLU_RS09955	0.80	+1.4
2,199,605	-		PFLU_RS09955	0.80	+1.6
2,199,605	-		PFLU_RS09955	0.80	-0.0
2,199,605	-		PFLU_RS09955	0.80	-0.4
2,199,605	-		PFLU_RS09955	0.80	-2.8
2,199,625	+		PFLU_RS09955	0.83	+0.9
2,199,748	+				+0.4
2,199,748	+				+0.7
2,199,748	+				+2.2
2,199,748	+				+0.9
2,199,748	+				-2.1
2,199,749	-				-1.9
2,199,841	+				+2.3
2,199,841	+				+1.5
2,199,841	+				+0.2
2,199,841	+				+2.2
2,199,841	+				+1.3
2,199,841	+				-3.2
2,199,841	+				+1.1
2,199,841	+				+2.0
2,199,841	+				+1.4
2,199,841	+				-1.0
2,199,841	+				+1.0
2,199,841	+				+2.3
2,199,841	+				-1.4
2,199,841	+				-0.8
2,199,842	-				+1.3
2,199,842	-				-0.1
2,199,920	+				+3.0
2,199,921	-				-0.2
2,199,938	+				-1.2
2,199,940	+				+0.1
2,199,940	+				+2.0
2,199,940	+				+0.0
2,199,940	+				-1.0
2,199,940	+				-1.6
2,199,941	-				+2.0
2,199,941	-				-0.1
2,199,941	-				+0.4
2,199,941	-				-1.8
2,199,941	-				+1.8
2,200,040	+				+1.2
2,200,040	+				+0.9
2,200,040	+				-0.1
2,200,040	+				+1.0
2,200,041	-				+0.5
2,200,041	-				-2.8
2,200,041	-				-0.0
2,200,041	-				+0.6
2,200,041	-				+3.7
2,200,041	-				-2.6
2,200,375	+		PFLU_RS09960	0.52	-1.6
2,200,375	+		PFLU_RS09960	0.52	+2.4
2,200,375	+		PFLU_RS09960	0.52	-0.8
2,200,375	+		PFLU_RS09960	0.52	+1.4
2,200,375	+		PFLU_RS09960	0.52	-1.9
2,200,375	+		PFLU_RS09960	0.52	-2.0
2,200,375	+		PFLU_RS09960	0.52	+2.3
2,200,375	+		PFLU_RS09960	0.52	-2.3
2,200,376	-		PFLU_RS09960	0.52	-0.5
2,200,376	-		PFLU_RS09960	0.52	+0.8
2,200,376	-		PFLU_RS09960	0.52	+1.1
2,200,376	-		PFLU_RS09960	0.52	-1.9
2,200,376	-		PFLU_RS09960	0.52	+0.5
2,200,376	-		PFLU_RS09960	0.52	-0.8
2,200,376	-		PFLU_RS09960	0.52	+1.3
2,200,410	+		PFLU_RS09960	0.59	+0.6
2,200,411	-		PFLU_RS09960	0.59	+1.6
2,200,636	+				-2.2
2,200,636	+				+2.1
2,200,636	+				-2.6
2,200,636	+				-2.2
2,200,636	+				+2.1
2,200,636	+				-0.1
2,200,637	-				-1.6
2,200,637	-				+1.6
2,200,637	-				-0.0
2,200,637	-				-1.2
2,200,637	-				-2.4
2,200,637	-				+0.6
2,200,637	-				-0.4
2,200,637	-				-0.5
2,200,637	-				-1.4
2,200,657	+				-1.0
2,200,657	+				+0.6
2,200,657	+				-2.3
2,200,658	-				+0.6
2,200,658	-				-2.0
2,200,658	-				-2.3
2,200,658	-				-1.1
2,200,658	-				+0.6
2,200,658	-				-0.5
2,200,658	-				-1.6
2,200,658	-				-1.8
2,200,661	+				-1.1
2,200,661	+				+0.1
2,200,661	+				-1.9
2,200,661	+				-1.9
2,200,661	+				+1.5
2,200,661	+				+1.9
2,200,661	+				+1.9
2,200,661	+				+2.7
2,200,661	+				+1.6
2,200,661	+				-2.5
2,200,661	+				-1.0
2,200,661	+				+0.5
2,200,661	+				+1.6
2,200,662	-				-3.2
2,200,662	-				-2.4
2,200,662	-				-1.8
2,200,662	-				+0.6
2,200,662	-				+1.4
2,200,662	-				-1.0
2,200,662	-				+0.9
2,200,662	-				-0.0
2,200,662	-				-1.1
2,200,662	-				-2.8
2,200,662	-				+1.6
2,200,662	-				+2.2
2,200,664	+				+0.7
2,200,664	+				-2.0
2,200,664	+				+0.7
2,200,664	+				+0.9
2,200,664	+				+3.2
2,200,664	+				+2.2
2,200,664	+				+0.6
2,200,664	+				-0.1
2,200,664	+				-1.8
2,200,664	+				+0.2
2,200,664	+				-2.0
2,200,664	+				-0.4
2,200,664	+				-0.3
2,200,664	+				+1.6
2,200,664	+				-2.3
2,200,664	+				-0.3
2,200,664	+				-0.1
2,200,665	-				+1.2
2,200,665	-				+1.6
2,200,665	-				-0.4
2,200,665	-				-1.8
2,200,665	-				-0.6
2,200,665	-				-2.0
2,200,665	-				+0.9
2,200,665	-				-1.2
2,200,665	-				-2.2
2,200,665	-				-1.6
2,200,665	-				-0.0
2,200,665	-				-2.2
2,200,665	-				+0.4
2,200,665	-				+1.8
2,200,665	-				-0.4
2,200,665	-				-1.8
2,200,665	-				-0.0
2,200,665	-				-1.9
2,200,665	-				+0.1
2,200,665	-				+1.0
2,200,665	-				-0.5
2,200,665	-				-1.9
2,200,665	-				-0.5
2,200,665	-				-2.1
2,200,665	-				+0.5
2,200,665	-				-0.8
2,200,674	+				+1.7
2,200,704	+				+0.7