Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08080

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
1,799,291	+		PFLU_RS08075	0.39	+0.6
1,799,292	-		PFLU_RS08075	0.39	+1.6
1,799,329	+		PFLU_RS08075	0.42	+2.0
1,799,329	+		PFLU_RS08075	0.42	+2.3
1,799,329	+		PFLU_RS08075	0.42	+0.6
1,799,329	+		PFLU_RS08075	0.42	-2.1
1,799,329	+		PFLU_RS08075	0.42	-1.2
1,799,330	-		PFLU_RS08075	0.42	+0.8
1,799,330	-		PFLU_RS08075	0.42	+1.1
1,799,330	-		PFLU_RS08075	0.42	-0.2
1,799,330	-		PFLU_RS08075	0.42	+0.6
1,799,330	-		PFLU_RS08075	0.42	-0.2
1,799,330	-		PFLU_RS08075	0.42	+1.4
1,799,446	+		PFLU_RS08075	0.51	-0.4
1,799,446	+		PFLU_RS08075	0.51	+1.8
1,799,446	+		PFLU_RS08075	0.51	-0.9
1,799,446	+		PFLU_RS08075	0.51	+1.5
1,799,446	+		PFLU_RS08075	0.51	-0.0
1,799,446	+		PFLU_RS08075	0.51	-1.6
1,799,447	-		PFLU_RS08075	0.51	+3.6
1,799,447	-		PFLU_RS08075	0.51	+2.9
1,799,447	-		PFLU_RS08075	0.51	+2.4
1,799,447	-		PFLU_RS08075	0.51	-0.4
1,799,447	-		PFLU_RS08075	0.51	-2.3
1,799,514	+		PFLU_RS08075	0.56	-0.8
1,799,514	+		PFLU_RS08075	0.56	-3.1
1,799,514	+		PFLU_RS08075	0.56	+1.4
1,799,515	-		PFLU_RS08075	0.56	+1.6
1,799,701	-		PFLU_RS08075	0.70	+2.8
1,799,706	+		PFLU_RS08075	0.70	-0.4
1,799,706	+		PFLU_RS08075	0.70	-2.2
1,799,706	+		PFLU_RS08075	0.70	+0.8
1,799,706	+		PFLU_RS08075	0.70	+2.4
1,799,706	+		PFLU_RS08075	0.70	+1.3
1,799,706	+		PFLU_RS08075	0.70	-0.7
1,799,706	+		PFLU_RS08075	0.70	+0.6
1,799,706	+		PFLU_RS08075	0.70	+2.8
1,799,706	+		PFLU_RS08075	0.70	-1.0
1,799,706	+		PFLU_RS08075	0.70	-1.0
1,799,706	+		PFLU_RS08075	0.70	-0.2
1,799,706	+		PFLU_RS08075	0.70	-0.0
1,799,706	+		PFLU_RS08075	0.70	-0.4
1,799,706	+		PFLU_RS08075	0.70	-0.9
1,799,706	+		PFLU_RS08075	0.70	+2.2
1,799,706	+		PFLU_RS08075	0.70	+0.2
1,799,707	-		PFLU_RS08075	0.70	+1.1
1,799,707	-		PFLU_RS08075	0.70	+0.6
1,799,707	-		PFLU_RS08075	0.70	-2.6
1,799,707	-		PFLU_RS08075	0.70	+0.6
1,799,707	-		PFLU_RS08075	0.70	-1.4
1,799,707	-		PFLU_RS08075	0.70	-1.3
1,799,707	-		PFLU_RS08075	0.70	+1.4
1,799,707	-		PFLU_RS08075	0.70	-0.7
1,799,707	-		PFLU_RS08075	0.70	+0.2
1,799,707	-		PFLU_RS08075	0.70	+1.2
1,799,707	-		PFLU_RS08075	0.70	-1.6
1,799,707	-		PFLU_RS08075	0.70	+0.9
1,799,707	-		PFLU_RS08075	0.70	-0.0
1,799,707	-		PFLU_RS08075	0.70	+2.4
1,799,707	-		PFLU_RS08075	0.70	-2.3
1,799,707	-		PFLU_RS08075	0.70	+2.3
1,799,707	-		PFLU_RS08075	0.70	+2.0
1,799,707	-		PFLU_RS08075	0.70	-1.6
1,799,707	-		PFLU_RS08075	0.70	-0.5
1,799,707	-		PFLU_RS08075	0.70	+0.5
1,799,707	-		PFLU_RS08075	0.70	-0.6
1,799,707	-		PFLU_RS08075	0.70	-0.4
1,799,707	-		PFLU_RS08075	0.70	+2.0
1,799,707	-		PFLU_RS08075	0.70	-0.9
1,799,707	-		PFLU_RS08075	0.70	+2.2
1,799,707	-		PFLU_RS08075	0.70	+1.3
1,799,774	+		PFLU_RS08075	0.75	+1.0
1,799,775	-		PFLU_RS08075	0.75	-1.4
1,800,126	+				+0.3
1,800,126	+				-1.2
1,800,126	+				+0.4
1,800,126	+				+1.7
1,800,127	-				+1.6
1,800,127	-				-0.0
1,800,127	-				-2.3
1,800,128	+				+1.1
1,800,128	+				+4.8
1,800,128	+				+1.8
1,800,128	+				+3.4
1,800,129	-				+0.8
1,800,129	-				-1.0
1,800,129	-				+2.5
1,800,129	-				+0.3
1,800,129	-				-0.3
1,800,144	+				-0.4
1,800,144	+				-0.7
1,800,144	+				-0.4
1,800,144	+				+0.7
1,800,144	+				-1.2
1,800,145	-				+1.3
1,800,145	-				+1.6
1,800,145	-				-2.4
1,800,145	-				+0.7
1,800,145	-				-0.0
1,800,145	-				-2.0
1,800,145	-				+0.3
1,800,145	-				+3.9
1,800,145	-				+1.2
1,800,145	-				+0.7
1,800,145	-				-0.3
1,800,146	+				-0.2
1,800,174	+				-1.2
1,800,174	+				-0.4
1,800,174	+				-1.1
1,800,175	-				-2.2
1,800,175	-				+0.8
1,800,175	-				+2.4
1,800,175	-				-2.5
1,800,175	-				-0.7
1,800,176	+				-0.7
1,800,177	-				-0.3
1,800,177	-				-2.5
1,800,177	-				-2.1
1,800,206	+				-2.7
1,800,207	-				-0.6
1,800,275	+				-1.6
1,800,275	+				-3.2
1,800,276	-				-0.4
1,800,276	-				-0.0
1,800,276	-				+0.3
1,800,276	-				-1.6
1,800,276	-				-0.4
1,800,358	+		PFLU_RS08080	0.14	-2.3
1,800,359	-		PFLU_RS08080	0.14	-0.3
1,800,359	-		PFLU_RS08080	0.14	-1.9
1,800,404	+		PFLU_RS08080	0.18	-2.2
1,800,405	-		PFLU_RS08080	0.18	-2.0
1,800,405	-		PFLU_RS08080	0.18	+0.3
1,800,476	+		PFLU_RS08080	0.25	-2.6
1,800,476	+		PFLU_RS08080	0.25	-2.0
1,800,476	+		PFLU_RS08080	0.25	-1.9
1,800,476	+		PFLU_RS08080	0.25	-1.1
1,800,476	+		PFLU_RS08080	0.25	-1.5
1,800,477	-		PFLU_RS08080	0.25	-1.2
1,800,477	-		PFLU_RS08080	0.25	-2.3
1,800,771	-		PFLU_RS08080	0.52	-1.5
1,800,771	-		PFLU_RS08080	0.52	-0.0
1,800,771	-		PFLU_RS08080	0.52	+2.6
1,800,797	+		PFLU_RS08080	0.54	-1.7
1,800,797	+		PFLU_RS08080	0.54	-1.9
1,800,797	+		PFLU_RS08080	0.54	-0.4
1,800,797	+		PFLU_RS08080	0.54	-2.3
1,800,797	+		PFLU_RS08080	0.54	-1.7
1,800,797	+		PFLU_RS08080	0.54	-2.2
1,800,798	-		PFLU_RS08080	0.54	+1.6
1,800,798	-		PFLU_RS08080	0.54	-3.4
1,800,798	-		PFLU_RS08080	0.54	-1.7
1,800,798	-		PFLU_RS08080	0.54	-0.4
1,800,798	-		PFLU_RS08080	0.54	-0.4
1,800,798	-		PFLU_RS08080	0.54	-0.4
1,800,798	-		PFLU_RS08080	0.54	-2.7
1,800,866	-		PFLU_RS08080	0.61	-2.6
1,800,905	-		PFLU_RS08080	0.64	-3.4
1,800,905	-		PFLU_RS08080	0.64	-0.4
1,800,992	+		PFLU_RS08080	0.72	-0.3
1,800,992	+		PFLU_RS08080	0.72	-1.0
1,800,992	+		PFLU_RS08080	0.72	-0.0
1,800,992	+		PFLU_RS08080	0.72	+0.6
1,800,992	+		PFLU_RS08080	0.72	-0.3
1,800,992	+		PFLU_RS08080	0.72	+1.9
1,800,993	-		PFLU_RS08080	0.73	-1.5
1,800,993	-		PFLU_RS08080	0.73	-1.0
1,800,993	-		PFLU_RS08080	0.73	-1.4
1,800,993	-		PFLU_RS08080	0.73	-0.9
1,800,993	-		PFLU_RS08080	0.73	-2.1
1,800,993	-		PFLU_RS08080	0.73	-0.5
1,800,993	-		PFLU_RS08080	0.73	-1.4
1,800,993	-		PFLU_RS08080	0.73	-2.1
1,800,993	-		PFLU_RS08080	0.73	+1.0
1,800,993	-		PFLU_RS08080	0.73	-1.4
1,801,163	+		PFLU_RS08080	0.88	-0.3
1,801,163	+		PFLU_RS08080	0.88	+0.2
1,801,163	+		PFLU_RS08080	0.88	-3.0
1,801,163	+		PFLU_RS08080	0.88	-0.5
1,801,163	+		PFLU_RS08080	0.88	+1.2
1,801,163	+		PFLU_RS08080	0.88	+0.8
1,801,163	+		PFLU_RS08080	0.88	-3.2
1,801,163	+		PFLU_RS08080	0.88	-1.7
1,801,164	-		PFLU_RS08080	0.88	+0.6
1,801,164	-		PFLU_RS08080	0.88	-2.6
1,801,164	-		PFLU_RS08080	0.88	-3.2
1,801,164	-		PFLU_RS08080	0.88	-1.3
1,801,164	-		PFLU_RS08080	0.88	-2.3
1,801,164	-		PFLU_RS08080	0.88	-2.2
1,801,164	-		PFLU_RS08080	0.88	-1.0
1,801,164	-		PFLU_RS08080	0.88	+0.6
1,801,164	-		PFLU_RS08080	0.88	+0.6
1,801,164	-		PFLU_RS08080	0.88	-2.9
1,801,164	-		PFLU_RS08080	0.88	-1.0
1,801,273	+				-2.8
1,801,274	-				-1.9
1,801,274	-				-1.2
1,801,392	+				+0.6
1,801,392	+				+1.7
1,801,393	-				+0.4
1,801,393	-				-1.4
1,801,393	-				-0.7
1,801,393	-				-1.0
1,801,393	-				+1.6
1,801,393	-				+0.1
1,801,394	+				-0.9
1,801,394	+				-1.3
1,801,394	+				+1.6
1,801,394	+				+1.6
1,801,394	+				-0.4
1,801,394	+				+1.6
1,801,394	+				+0.3
1,801,394	+				-0.3
1,801,394	+				-0.5
1,801,394	+				-1.0
1,801,395	-				+0.4
1,801,395	-				-0.4
1,801,395	-				-2.0
1,801,395	-				+0.7
1,801,395	-				+1.6
1,801,395	-				+3.0
1,801,395	-				-0.7
1,801,395	-				-0.4
1,801,488	+				-2.8
1,801,488	+				-0.5
1,801,488	+				+0.4
1,801,488	+				-1.6
1,801,488	+				-1.6
1,801,488	+				+0.4
1,801,488	+				-0.4
1,801,488	+				-0.7
1,801,488	+				-0.0
1,801,488	+				-2.3
1,801,488	+				+0.2
1,801,488	+				+1.9
1,801,488	+				+0.9
1,801,488	+				-1.2
1,801,488	+				+0.3
1,801,488	+				+0.3
1,801,488	+				-1.9
1,801,488	+				-0.0
1,801,488	+				-0.5
1,801,489	-				+0.3
1,801,489	-				-1.7
1,801,489	-				-0.9
1,801,489	-				-3.3
1,801,489	-				-0.2
1,801,489	-				+0.9
1,801,489	-				+0.8
1,801,489	-				+2.2
1,801,489	-				-0.0
1,801,489	-				-0.3
1,801,489	-				-0.9
1,801,489	-				+1.3
1,801,489	-				-0.7
1,801,489	-				-1.7
1,801,489	-				+0.8
1,801,491	+				-1.9
1,801,491	+				-0.8
1,801,491	+				+0.1
1,801,491	+				-2.1
1,801,491	+				-2.0
1,801,491	+				+0.6
1,801,491	+				+1.7
1,801,491	+				+2.2
1,801,492	-				-1.7
1,801,492	-				-2.2
1,801,492	-				+3.4
1,801,492	-				-2.0
1,801,492	-				+0.7
1,801,492	-				-2.1
1,801,492	-				+0.8
1,801,515	+				-0.8
1,801,515	+				+1.0
1,801,516	-				+1.1
1,801,516	-				+1.2
1,801,516	-				+0.4
1,801,516	-				+1.8
1,801,516	-				+1.0
1,801,538	+				+1.5
1,801,578	+				+2.8
1,801,578	+				-0.7
1,801,578	+				+0.7
1,801,578	+				-0.2
1,801,580	+				+0.2
1,801,580	+				-0.5
1,801,580	+				+3.8
1,801,600	+				+0.4