Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5512

Experiment: nitrogen source nitrite 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 5mM
6,327,883	+		Pf6N2E2_5511	0.13	+1.7
6,327,884	-		Pf6N2E2_5511	0.14	-0.9
6,327,884	-		Pf6N2E2_5511	0.14	-0.3
6,327,900	-		Pf6N2E2_5511	0.16	+0.4
6,328,064	-		Pf6N2E2_5511	0.37	-0.1
6,328,087	+		Pf6N2E2_5511	0.40	-0.9
6,328,087	+		Pf6N2E2_5511	0.40	+0.5
6,328,087	+		Pf6N2E2_5511	0.40	-0.1
6,328,087	+		Pf6N2E2_5511	0.40	-0.6
6,328,087	+		Pf6N2E2_5511	0.40	+0.5
6,328,175	-		Pf6N2E2_5511	0.51	-0.2
6,328,237	+		Pf6N2E2_5511	0.60	-0.8
6,328,237	+		Pf6N2E2_5511	0.60	-0.3
6,328,238	-		Pf6N2E2_5511	0.60	+1.7
6,328,238	-		Pf6N2E2_5511	0.60	-0.1
6,328,238	-		Pf6N2E2_5511	0.60	+1.0
6,328,238	-		Pf6N2E2_5511	0.60	+2.0
6,328,258	+		Pf6N2E2_5511	0.62	-0.3
6,328,258	+		Pf6N2E2_5511	0.62	+1.2
6,328,258	+		Pf6N2E2_5511	0.62	-0.7
6,328,258	+		Pf6N2E2_5511	0.62	-0.6
6,328,258	+		Pf6N2E2_5511	0.62	+0.1
6,328,258	+		Pf6N2E2_5511	0.62	-2.0
6,328,258	+		Pf6N2E2_5511	0.62	-0.9
6,328,259	-		Pf6N2E2_5511	0.62	+0.2
6,328,259	-		Pf6N2E2_5511	0.62	-0.3
6,328,259	-		Pf6N2E2_5511	0.62	-0.3
6,328,318	+		Pf6N2E2_5511	0.70	-0.6
6,328,318	+		Pf6N2E2_5511	0.70	+0.2
6,328,318	+		Pf6N2E2_5511	0.70	-0.6
6,328,318	+		Pf6N2E2_5511	0.70	-0.9
6,328,318	+		Pf6N2E2_5511	0.70	+0.5
6,328,318	+		Pf6N2E2_5511	0.70	-0.4
6,328,318	+		Pf6N2E2_5511	0.70	+0.7
6,328,319	-		Pf6N2E2_5511	0.70	+0.4
6,328,319	-		Pf6N2E2_5511	0.70	+0.5
6,328,319	-		Pf6N2E2_5511	0.70	+0.5
6,328,319	-		Pf6N2E2_5511	0.70	-0.3
6,328,319	-		Pf6N2E2_5511	0.70	+0.3
6,328,319	-		Pf6N2E2_5511	0.70	-0.1
6,328,444	-		Pf6N2E2_5511	0.86	-0.3
6,328,444	-		Pf6N2E2_5511	0.86	-0.3
6,328,484	-				-0.1
6,328,524	+				-0.1
6,328,525	-				-0.1
6,328,525	-				+0.8
6,328,607	+				-0.2
6,328,607	+				+0.6
6,328,607	+				-1.1
6,328,607	+				+0.3
6,328,608	-				+0.0
6,328,608	-				+1.7
6,328,610	+				+0.6
6,328,611	-				-0.5
6,328,611	-				-0.1
6,328,649	+				+0.4
6,328,649	+				-0.4
6,328,650	-				-0.2
6,329,177	+		Pf6N2E2_5512	0.56	+0.5
6,329,178	-		Pf6N2E2_5512	0.56	+0.2
6,329,178	-		Pf6N2E2_5512	0.56	+0.4
6,329,255	+		Pf6N2E2_5512	0.63	-0.2
6,329,270	+		Pf6N2E2_5512	0.65	+0.1
6,329,270	+		Pf6N2E2_5512	0.65	-0.0
6,329,270	+		Pf6N2E2_5512	0.65	+1.1
6,329,270	+		Pf6N2E2_5512	0.65	+1.0
6,329,270	+		Pf6N2E2_5512	0.65	+1.7
6,329,271	-		Pf6N2E2_5512	0.65	-0.3
6,329,271	-		Pf6N2E2_5512	0.65	-2.5
6,329,339	+		Pf6N2E2_5512	0.71	+0.0
6,329,340	-		Pf6N2E2_5512	0.71	+0.2
6,329,403	-		Pf6N2E2_5512	0.77	+0.7
6,329,403	-		Pf6N2E2_5512	0.77	+0.6
6,329,434	+		Pf6N2E2_5512	0.80	-1.5
6,329,435	-		Pf6N2E2_5512	0.80	-1.2
6,329,435	-		Pf6N2E2_5512	0.80	+0.0
6,329,435	-		Pf6N2E2_5512	0.80	+1.7
6,329,522	+		Pf6N2E2_5512	0.88	+0.4
6,329,522	+		Pf6N2E2_5512	0.88	-0.4
6,329,522	+		Pf6N2E2_5512	0.88	-1.9
6,329,522	+		Pf6N2E2_5512	0.88	+0.0
6,329,522	+		Pf6N2E2_5512	0.88	-0.1
6,329,522	+		Pf6N2E2_5512	0.88	+0.4
6,329,523	-		Pf6N2E2_5512	0.88	+0.1
6,329,523	-		Pf6N2E2_5512	0.88	-0.5
6,329,523	-		Pf6N2E2_5512	0.88	-0.5
6,329,523	-		Pf6N2E2_5512	0.88	-0.6
6,329,523	-		Pf6N2E2_5512	0.88	-0.0
6,329,618	+				+0.6
6,329,618	+				-0.3
6,329,618	+				-0.3
6,329,618	+				+0.3
6,329,618	+				-0.5
6,329,619	-				+1.7
6,329,648	+				+0.4
6,329,648	+				+0.4
6,329,659	+				-0.4
6,329,659	+				-0.3
6,329,659	+				-0.6
6,329,659	+				+1.0
6,329,659	+				-0.6
6,329,659	+				-0.6
6,329,659	+				+0.5
6,329,659	+				+0.9
6,329,659	+				-1.0
6,329,659	+				+1.7
6,329,660	-				+1.7
6,329,660	-				+0.5
6,329,660	-				-1.4
6,329,668	+				+0.8
6,329,668	+				+0.9
6,329,670	+				+0.3
6,329,670	+				-3.0
6,329,670	+				-0.0
6,329,670	+				-0.4
6,329,671	-				-1.0
6,329,671	-				+0.4
6,329,671	-				+1.2
6,329,718	+				+0.5
6,329,718	+				+0.8
6,329,719	-				-0.4
6,329,719	-				-0.5
6,329,719	-				-0.4
6,329,721	+				-0.7
6,329,721	+				+0.1
6,329,721	+				-0.9
6,329,721	+				+0.1
6,329,722	-				+0.7
6,329,722	-				-1.0
6,329,727	+				+0.1
6,329,727	+				+0.6
6,329,727	+				+0.1
6,329,727	+				+0.2
6,329,727	+				+1.3
6,329,727	+				+0.8
6,329,727	+				+0.7
6,329,727	+				+0.2
6,329,727	+				+0.4
6,329,727	+				+0.1
6,329,728	-				-0.4
6,329,728	-				+1.7
6,329,728	-				+1.7
6,329,728	-				+1.7
6,329,728	-				+0.7
6,329,744	+				-0.9
6,329,744	+				+0.0
6,329,761	+				-0.3
6,329,765	+				-0.5
6,329,765	+				-2.3
6,329,765	+				+0.0
6,329,765	+				+0.9
6,329,765	+				-0.9
6,329,765	+				-1.4
6,329,765	+				+0.7
6,329,765	+				+1.7
6,329,766	-				-1.4
6,329,928	+				+0.1
6,329,928	+				-0.8
6,329,929	-				-0.7
6,329,929	-				-1.6
6,329,948	+				+0.8
6,329,948	+				-0.1
6,329,948	+				-0.7
6,329,948	+				+1.7
6,329,948	+				+0.4
6,329,948	+				+0.1
6,329,948	+				+0.8
6,329,948	+				+0.2
6,329,948	+				-2.9
6,329,949	-				+1.7
6,329,949	-				+0.1
6,329,949	-				-1.4
6,329,949	-				+0.8
6,329,949	-				-0.2
6,329,949	-				+0.3
6,329,950	+				+3.3
6,329,950	+				+0.4
6,329,950	+				-0.5
6,329,951	-				-0.5
6,329,951	-				-0.5
6,329,951	-				-3.1
6,329,951	-				-0.3
6,329,951	-				-0.5
6,329,952	+				-0.3
6,329,952	+				-0.3
6,329,952	+				-1.1
6,329,952	+				+0.1
6,329,952	+				-0.7
6,329,952	+				-1.3
6,329,953	-				+0.9
6,329,953	-				+1.7
6,329,953	-				-0.9
6,329,953	-				-2.4
6,329,953	-				-0.3
6,329,953	-				+0.5
6,329,953	-				+2.0
6,329,953	-				+0.5
6,329,953	-				-0.2
6,329,953	-				+1.7
6,329,973	+				-2.6
6,329,974	-				+1.0
6,329,974	-				+0.4
6,329,995	+				-0.6
6,329,995	+				-0.3
6,329,995	+				-0.9
6,329,995	+				-0.8
6,329,995	+				+0.1
6,329,996	-				-1.0
6,329,996	-				-0.3
6,329,996	-				-3.8
6,329,996	-				-1.2
6,329,996	-				+0.6
6,329,996	-				+0.3
6,329,996	-				+0.7
6,329,996	-				-0.1
6,330,244	-		Pf6N2E2_5513	0.22	+0.7
6,330,409	+		Pf6N2E2_5513	0.33	+0.1