Experiment: phage 99.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3463 and Atu3464 are separated by 26 nucleotides Atu3464 and Atu8032 are separated by 13 nucleotides Atu8032 and Atu3465 are separated by 262 nucleotides
Atu3463: Atu3463 - non-heme chloroperoxidase, at 511,064 to 511,891
Atu3463
Atu3464: Atu3464 - dehydrogenase, at 511,918 to 512,709
Atu3464
Atu8032: Atu8032 - hypothetical protein, at 512,723 to 513,208
Atu8032
Atu3465: Atu3465 - metallo-beta-lactamase superfamily protein, at 513,471 to 514,766
Atu3465
Position (kb) 512
513
514 Strain fitness (log2 ratio) -1
0
1
2 at 511.824 kb on + strand at 511.855 kb on + strand at 511.863 kb on - strand at 511.887 kb on + strand at 511.977 kb on - strand at 512.003 kb on + strand, within Atu3464 at 512.005 kb on - strand, within Atu3464 at 512.011 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.140 kb on - strand, within Atu3464 at 512.162 kb on - strand, within Atu3464 at 512.167 kb on - strand, within Atu3464 at 512.341 kb on + strand, within Atu3464 at 512.453 kb on - strand, within Atu3464 at 512.455 kb on + strand, within Atu3464 at 512.493 kb on + strand, within Atu3464 at 512.499 kb on + strand, within Atu3464 at 512.531 kb on - strand, within Atu3464 at 512.601 kb on + strand, within Atu3464 at 512.652 kb on - strand at 512.652 kb on - strand at 512.982 kb on + strand, within Atu8032 at 512.982 kb on + strand, within Atu8032 at 512.982 kb on + strand, within Atu8032 at 513.070 kb on + strand, within Atu8032 at 513.137 kb on + strand, within Atu8032 at 513.154 kb on - strand, within Atu8032 at 513.168 kb on + strand at 513.233 kb on + strand at 513.312 kb on - strand at 513.367 kb on - strand at 513.367 kb on - strand at 513.932 kb on + strand, within Atu3465 at 513.940 kb on - strand, within Atu3465
Per-strain Table
Position Strand Gene LocusTag Fraction phage 99.2 remove 511,824 + +0.5 511,855 + +0.3 511,863 - +0.2 511,887 + +0.3 511,977 - -0.3 512,003 + Atu3464 0.11 +0.7 512,005 - Atu3464 0.11 +0.1 512,011 - Atu3464 0.12 +2.3 512,042 - Atu3464 0.16 -0.1 512,042 - Atu3464 0.16 +0.8 512,042 - Atu3464 0.16 +0.1 512,140 - Atu3464 0.28 +1.9 512,162 - Atu3464 0.31 +1.3 512,167 - Atu3464 0.31 +0.5 512,341 + Atu3464 0.53 -1.6 512,453 - Atu3464 0.68 -0.3 512,455 + Atu3464 0.68 -0.3 512,493 + Atu3464 0.73 +0.6 512,499 + Atu3464 0.73 +0.7 512,531 - Atu3464 0.77 +0.7 512,601 + Atu3464 0.86 +0.1 512,652 - -0.2 512,652 - +0.0 512,982 + Atu8032 0.53 -0.9 512,982 + Atu8032 0.53 +0.4 512,982 + Atu8032 0.53 -1.2 513,070 + Atu8032 0.71 -0.9 513,137 + Atu8032 0.85 +0.0 513,154 - Atu8032 0.89 -1.6 513,168 + -0.2 513,233 + -0.1 513,312 - +0.1 513,367 - -0.6 513,367 - +0.1 513,932 + Atu3465 0.36 -1.0 513,940 - Atu3465 0.36 +0.0
Or see this region's nucleotide sequence