Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21660

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,880,962	+		PFLU_RS21650	0.66	+0.2
4,880,962	+		PFLU_RS21650	0.66	+0.2
4,880,962	+		PFLU_RS21650	0.66	-1.4
4,880,962	+		PFLU_RS21650	0.66	-0.2
4,880,962	+		PFLU_RS21650	0.66	+0.4
4,880,962	+		PFLU_RS21650	0.66	-0.5
4,880,962	+		PFLU_RS21650	0.66	+1.0
4,880,962	+		PFLU_RS21650	0.66	+0.3
4,880,962	+		PFLU_RS21650	0.66	-0.2
4,880,962	+		PFLU_RS21650	0.66	-0.7
4,880,962	+		PFLU_RS21650	0.66	+0.5
4,880,962	+		PFLU_RS21650	0.66	-0.0
4,880,962	+		PFLU_RS21650	0.66	+0.2
4,880,962	+		PFLU_RS21650	0.66	+0.7
4,880,962	+		PFLU_RS21650	0.66	-0.4
4,880,962	+		PFLU_RS21650	0.66	+0.8
4,880,963	-		PFLU_RS21650	0.66	-0.2
4,880,963	-		PFLU_RS21650	0.66	+0.7
4,880,963	-		PFLU_RS21650	0.66	+1.5
4,880,963	-		PFLU_RS21650	0.66	+0.3
4,880,963	-		PFLU_RS21650	0.66	+2.5
4,880,963	-		PFLU_RS21650	0.66	+0.4
4,880,963	-		PFLU_RS21650	0.66	+0.3
4,881,017	+		PFLU_RS21650	0.72	+0.9
4,881,017	+		PFLU_RS21650	0.72	+0.9
4,881,017	+		PFLU_RS21650	0.72	+1.2
4,881,017	+		PFLU_RS21650	0.72	+0.7
4,881,018	-		PFLU_RS21650	0.73	-1.2
4,881,018	-		PFLU_RS21650	0.73	-0.4
4,881,085	+		PFLU_RS21650	0.81	-1.5
4,881,086	-		PFLU_RS21650	0.81	+0.3
4,881,123	+		PFLU_RS21650	0.86	+0.9
4,881,124	-		PFLU_RS21650	0.86	-0.3
4,881,224	+				+0.3
4,881,224	+				-0.2
4,881,225	-				+1.2
4,881,225	-				+0.2
4,881,225	-				-1.3
4,881,233	+				-0.2
4,881,233	+				+0.4
4,881,233	+				+0.5
4,881,233	+				+1.5
4,881,233	+				-1.7
4,881,233	+				-1.4
4,881,233	+				+0.6
4,881,233	+				+1.6
4,881,233	+				-1.3
4,881,233	+				-0.0
4,881,233	+				+0.4
4,881,234	-				-0.2
4,881,234	-				-0.2
4,881,234	-				+0.6
4,881,234	-				-0.5
4,881,234	-				+0.4
4,881,234	-				+0.7
4,881,234	-				+0.8
4,881,234	-				-0.8
4,881,234	-				-0.8
4,881,234	-				-0.4
4,881,234	-				-2.0
4,881,234	-				-0.2
4,881,234	-				+0.8
4,881,234	-				+0.2
4,881,325	+		PFLU_RS21655	0.19	+0.4
4,881,325	+		PFLU_RS21655	0.19	-0.1
4,881,325	+		PFLU_RS21655	0.19	+0.7
4,881,326	-		PFLU_RS21655	0.19	+0.2
4,881,332	+		PFLU_RS21655	0.21	-0.1
4,881,408	+		PFLU_RS21655	0.40	+0.0
4,881,408	+		PFLU_RS21655	0.40	-2.0
4,881,408	+		PFLU_RS21655	0.40	-1.4
4,881,408	+		PFLU_RS21655	0.40	+0.2
4,881,408	+		PFLU_RS21655	0.40	-0.7
4,881,409	-		PFLU_RS21655	0.41	+0.3
4,881,409	-		PFLU_RS21655	0.41	-1.6
4,881,522	-		PFLU_RS21655	0.70	+0.2
4,881,549	-		PFLU_RS21655	0.77	+0.4
4,881,579	+		PFLU_RS21655	0.84	+1.2
4,881,580	-		PFLU_RS21655	0.85	-0.2
4,881,658	+				-0.2
4,881,658	+				-0.1
4,881,659	-				+0.4
4,881,703	+				-0.1
4,881,703	+				-0.3
4,881,703	+				+0.9
4,881,703	+				-0.5
4,881,703	+				-1.4
4,881,704	-				-0.5
4,881,704	-				-1.9
4,881,921	+		PFLU_RS21660	0.17	+0.8
4,881,921	+		PFLU_RS21660	0.17	+0.7
4,881,921	+		PFLU_RS21660	0.17	+0.6
4,881,921	+		PFLU_RS21660	0.17	+1.1
4,881,921	+		PFLU_RS21660	0.17	+1.2
4,881,921	+		PFLU_RS21660	0.17	+0.2
4,881,921	+		PFLU_RS21660	0.17	+0.5
4,881,922	-		PFLU_RS21660	0.17	-0.3
4,881,924	+		PFLU_RS21660	0.18	-0.8
4,881,924	+		PFLU_RS21660	0.18	-0.3
4,881,924	+		PFLU_RS21660	0.18	+0.2
4,881,925	-		PFLU_RS21660	0.18	-0.8
4,881,925	-		PFLU_RS21660	0.18	-0.2
4,881,925	-		PFLU_RS21660	0.18	+0.1
4,881,925	-		PFLU_RS21660	0.18	-0.5
4,882,024	+		PFLU_RS21660	0.31	+0.2
4,882,024	+		PFLU_RS21660	0.31	+0.3
4,882,024	+		PFLU_RS21660	0.31	-1.4
4,882,025	-		PFLU_RS21660	0.31	-0.5
4,882,025	-		PFLU_RS21660	0.31	+1.2
4,882,025	-		PFLU_RS21660	0.31	-0.3
4,882,025	-		PFLU_RS21660	0.31	-0.4
4,882,111	+		PFLU_RS21660	0.43	+1.0
4,882,111	+		PFLU_RS21660	0.43	-0.1
4,882,111	+		PFLU_RS21660	0.43	-0.4
4,882,111	+		PFLU_RS21660	0.43	+0.4
4,882,111	+		PFLU_RS21660	0.43	-0.4
4,882,111	+		PFLU_RS21660	0.43	+0.1
4,882,111	+		PFLU_RS21660	0.43	+0.0
4,882,112	-		PFLU_RS21660	0.43	-0.4
4,882,112	-		PFLU_RS21660	0.43	-1.0
4,882,112	-		PFLU_RS21660	0.43	+0.2
4,882,131	+		PFLU_RS21660	0.45	+0.3
4,882,131	+		PFLU_RS21660	0.45	+0.4
4,882,132	-		PFLU_RS21660	0.46	+0.5
4,882,132	-		PFLU_RS21660	0.46	+1.4
4,882,132	-		PFLU_RS21660	0.46	+1.1
4,882,177	+		PFLU_RS21660	0.52	+2.4
4,882,234	+		PFLU_RS21660	0.59	+1.5
4,882,234	+		PFLU_RS21660	0.59	+0.7
4,882,235	-		PFLU_RS21660	0.60	+0.9
4,882,270	+		PFLU_RS21660	0.64	+0.5
4,882,270	+		PFLU_RS21660	0.64	+0.0
4,882,270	+		PFLU_RS21660	0.64	+0.3
4,882,270	+		PFLU_RS21660	0.64	+0.6
4,882,271	-		PFLU_RS21660	0.64	-0.1
4,882,271	-		PFLU_RS21660	0.64	+1.2
4,882,314	+		PFLU_RS21660	0.70	-0.4
4,882,314	+		PFLU_RS21660	0.70	-0.2
4,882,314	+		PFLU_RS21660	0.70	+0.5
4,882,314	+		PFLU_RS21660	0.70	+0.2
4,882,314	+		PFLU_RS21660	0.70	+0.8
4,882,314	+		PFLU_RS21660	0.70	+0.6
4,882,314	+		PFLU_RS21660	0.70	+0.5
4,882,314	+		PFLU_RS21660	0.70	+0.6
4,882,314	+		PFLU_RS21660	0.70	+1.7
4,882,314	+		PFLU_RS21660	0.70	+0.3
4,882,314	+		PFLU_RS21660	0.70	+0.6
4,882,314	+		PFLU_RS21660	0.70	+0.2
4,882,314	+		PFLU_RS21660	0.70	+0.7
4,882,314	+		PFLU_RS21660	0.70	+1.6
4,882,314	+		PFLU_RS21660	0.70	+1.0
4,882,314	+		PFLU_RS21660	0.70	+0.6
4,882,314	+		PFLU_RS21660	0.70	+1.1
4,882,315	-		PFLU_RS21660	0.70	-0.4
4,882,315	-		PFLU_RS21660	0.70	-0.2
4,882,315	-		PFLU_RS21660	0.70	+0.4
4,882,315	-		PFLU_RS21660	0.70	+0.1
4,882,315	-		PFLU_RS21660	0.70	-0.3
4,882,315	-		PFLU_RS21660	0.70	-0.3
4,882,315	-		PFLU_RS21660	0.70	+1.2
4,882,315	-		PFLU_RS21660	0.70	-0.3
4,882,315	-		PFLU_RS21660	0.70	-0.5
4,882,315	-		PFLU_RS21660	0.70	-0.1
4,882,315	-		PFLU_RS21660	0.70	-0.0
4,882,315	-		PFLU_RS21660	0.70	+0.3
4,882,315	-		PFLU_RS21660	0.70	-0.8
4,882,347	+		PFLU_RS21660	0.75	+0.8
4,882,347	+		PFLU_RS21660	0.75	+0.4
4,882,348	-		PFLU_RS21660	0.75	+0.3
4,882,348	-		PFLU_RS21660	0.75	+0.9
4,882,437	+		PFLU_RS21660	0.87	-0.1
4,882,437	+		PFLU_RS21660	0.87	+1.3
4,882,438	-		PFLU_RS21660	0.87	+0.6
4,882,438	-		PFLU_RS21660	0.87	+0.7
4,882,438	-		PFLU_RS21660	0.87	+0.2
4,882,509	+				+0.4
4,882,509	+				+1.1
4,882,509	+				+0.3
4,882,510	-				+0.2
4,882,510	-				+1.2
4,882,516	+				+1.0
4,882,517	-				+0.4
4,882,517	-				-0.5
4,882,518	+				+0.4
4,882,518	+				+0.9
4,882,518	+				+0.2
4,882,518	+				+0.7
4,882,518	+				+1.0
4,882,518	+				-0.1
4,882,518	+				+1.8
4,882,519	-				+0.1
4,882,519	-				+0.4
4,882,519	-				-1.0
4,882,519	-				+0.1
4,882,519	-				-0.6
4,882,519	-				+0.1
4,882,519	-				+1.2
4,882,534	+				+0.4
4,882,535	-				-0.1
4,882,535	-				-1.7
4,882,682	+		PFLU_RS21665	0.18	-0.4
4,882,682	+		PFLU_RS21665	0.18	+1.6
4,882,683	-		PFLU_RS21665	0.18	-0.8
4,882,683	-		PFLU_RS21665	0.18	-0.8
4,882,683	-		PFLU_RS21665	0.18	-1.1
4,882,745	+		PFLU_RS21665	0.26	-1.0
4,882,745	+		PFLU_RS21665	0.26	+1.5
4,882,745	+		PFLU_RS21665	0.26	-2.1
4,882,745	+		PFLU_RS21665	0.26	+2.2
4,882,745	+		PFLU_RS21665	0.26	+0.3
4,882,745	+		PFLU_RS21665	0.26	+0.2
4,882,745	+		PFLU_RS21665	0.26	-0.8
4,882,745	+		PFLU_RS21665	0.26	+1.7
4,882,745	+		PFLU_RS21665	0.26	-1.5
4,882,745	+		PFLU_RS21665	0.26	+0.5
4,882,745	+		PFLU_RS21665	0.26	-0.2
4,882,746	-		PFLU_RS21665	0.26	-0.4
4,882,746	-		PFLU_RS21665	0.26	-0.4
4,882,746	-		PFLU_RS21665	0.26	-0.4
4,882,746	-		PFLU_RS21665	0.26	-0.4
4,882,746	-		PFLU_RS21665	0.26	+0.6
4,882,746	-		PFLU_RS21665	0.26	+0.6
4,882,746	-		PFLU_RS21665	0.26	+0.6
4,882,746	-		PFLU_RS21665	0.26	-1.4
4,882,746	-		PFLU_RS21665	0.26	-1.4
4,882,746	-		PFLU_RS21665	0.26	-2.0
4,882,751	-		PFLU_RS21665	0.26	+0.2
4,882,751	-		PFLU_RS21665	0.26	+1.2
4,882,751	-		PFLU_RS21665	0.26	-0.8
4,882,751	-		PFLU_RS21665	0.26	-1.1
4,882,873	-		PFLU_RS21665	0.41	+1.6
4,882,892	+		PFLU_RS21665	0.43	+0.0
4,882,892	+		PFLU_RS21665	0.43	-0.8
4,882,936	+		PFLU_RS21665	0.49	+0.4
4,882,936	+		PFLU_RS21665	0.49	+1.2
4,882,936	+		PFLU_RS21665	0.49	+2.8
4,882,936	+		PFLU_RS21665	0.49	-0.4
4,882,937	-		PFLU_RS21665	0.49	-0.2
4,882,937	-		PFLU_RS21665	0.49	-1.0
4,882,937	-		PFLU_RS21665	0.49	-0.4
4,882,937	-		PFLU_RS21665	0.49	+3.8
4,882,937	-		PFLU_RS21665	0.49	+1.4
4,882,937	-		PFLU_RS21665	0.49	-1.4
4,882,937	-		PFLU_RS21665	0.49	-1.5
4,882,937	-		PFLU_RS21665	0.49	-0.1
4,882,937	-		PFLU_RS21665	0.49	-0.1
4,883,298	+				+1.9
4,883,298	+				-2.0
4,883,298	+				+2.1
4,883,298	+				-0.3
4,883,299	-				-2.0
4,883,299	-				+0.2
4,883,299	-				+0.2
4,883,344	+				+1.2
4,883,367	+				+1.2
4,883,367	+				+0.6
4,883,367	+				+0.6
4,883,368	-				-0.5
4,883,368	-				+0.7
4,883,368	-				-1.3
4,883,375	+				+1.5
4,883,375	+				-2.0
4,883,375	+				-0.4
4,883,376	-				-0.0
4,883,390	-				-0.8
4,883,400	+				-0.8
4,883,400	+				+0.2
4,883,400	+				+2.2
4,883,400	+				-0.8
4,883,400	+				+0.6
4,883,400	+				-0.8
4,883,400	+				-0.8
4,883,400	+				+0.2
4,883,401	-				+0.6
4,883,401	-				-1.5
4,883,401	-				-0.5
4,883,441	+				+1.2
4,883,441	+				-0.4
4,883,441	+				-0.6
4,883,441	+				+1.2
4,883,441	+				-1.6
4,883,441	+				-1.5
4,883,441	+				+0.5
4,883,441	+				+0.2
4,883,441	+				-1.1
4,883,441	+				-0.9
4,883,441	+				+2.2
4,883,441	+				-1.4
4,883,441	+				-1.1
4,883,441	+				-0.4
4,883,442	-				+0.1
4,883,442	-				-0.6
4,883,442	-				-0.5
4,883,442	-				-0.5
4,883,442	-				+0.1
4,883,442	-				-0.0
4,883,442	-				+0.8
4,883,442	-				-0.4
4,883,442	-				-0.4
4,883,442	-				+1.0
4,883,442	-				-1.4
4,883,442	-				-2.8
4,883,442	-				-0.1
4,883,445	+				+1.9
4,883,445	+				-0.1
4,883,446	-				+0.5
4,883,446	-				-1.1
4,883,446	-				-0.5
4,883,446	-				-2.6
4,883,446	-				-0.9
4,883,446	-				-0.3
4,883,446	-				-0.0
4,883,498	+				+0.2
4,883,514	+				-0.5
4,883,515	-				-1.6