Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25540

Experiment: Citraconic 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citraconic 20 mM (C)
5,697,957	-		PFLU_RS25530	0.86	+0.3
5,697,959	+		PFLU_RS25530	0.86	-1.9
5,697,959	+		PFLU_RS25530	0.86	-0.8
5,697,960	-		PFLU_RS25530	0.86	+0.1
5,697,960	-		PFLU_RS25530	0.86	+0.2
5,698,000	-				-0.5
5,698,012	-				-1.3
5,698,012	-				+1.0
5,698,031	+				-0.9
5,698,032	-				-1.8
5,698,032	-				-0.5
5,698,051	+				-0.3
5,698,051	+				-0.6
5,698,051	+				-1.5
5,698,052	-				-0.0
5,698,052	-				+1.6
5,698,061	+				+0.2
5,698,061	+				-0.5
5,698,062	-				+0.7
5,698,062	-				-0.6
5,698,062	-				+0.6
5,698,062	-				+0.2
5,698,062	-				-3.0
5,698,062	-				-1.1
5,698,062	-				-1.9
5,698,066	+				-1.2
5,698,066	+				-0.7
5,698,066	+				-1.1
5,698,066	+				+2.3
5,698,066	+				-0.4
5,698,066	+				-2.2
5,698,066	+				+0.6
5,698,066	+				-0.8
5,698,066	+				-1.1
5,698,066	+				+0.5
5,698,066	+				-0.5
5,698,066	+				+1.5
5,698,066	+				+0.0
5,698,067	-				+1.0
5,698,067	-				-0.5
5,698,067	-				-1.6
5,698,067	-				+0.2
5,698,067	-				+0.7
5,698,067	-				+0.1
5,698,067	-				+0.8
5,698,077	-				-1.2
5,698,126	+				+0.6
5,698,127	-				+0.3
5,698,127	-				+0.3
5,698,127	-				+0.9
5,698,127	-				+0.1
5,698,127	-				-1.2
5,698,127	-				+0.5
5,698,235	+		PFLU_RS25535	0.21	-1.1
5,698,236	-		PFLU_RS25535	0.21	+0.1
5,698,236	-		PFLU_RS25535	0.21	-0.1
5,698,236	-		PFLU_RS25535	0.21	+1.6
5,698,237	+		PFLU_RS25535	0.21	-0.5
5,698,238	-		PFLU_RS25535	0.21	-0.2
5,698,238	-		PFLU_RS25535	0.21	-0.0
5,698,238	-		PFLU_RS25535	0.21	+0.6
5,698,238	-		PFLU_RS25535	0.21	-0.3
5,698,238	-		PFLU_RS25535	0.21	-0.7
5,698,285	+		PFLU_RS25535	0.26	-1.0
5,698,285	+		PFLU_RS25535	0.26	+0.4
5,698,285	+		PFLU_RS25535	0.26	-0.2
5,698,285	+		PFLU_RS25535	0.26	-0.2
5,698,285	+		PFLU_RS25535	0.26	+0.5
5,698,285	+		PFLU_RS25535	0.26	-0.2
5,698,285	+		PFLU_RS25535	0.26	+1.8
5,698,285	+		PFLU_RS25535	0.26	-1.5
5,698,285	+		PFLU_RS25535	0.26	+1.0
5,698,286	-		PFLU_RS25535	0.27	-1.2
5,698,286	-		PFLU_RS25535	0.27	+0.4
5,698,286	-		PFLU_RS25535	0.27	-0.5
5,698,286	-		PFLU_RS25535	0.27	-0.9
5,698,286	-		PFLU_RS25535	0.27	-2.0
5,698,286	-		PFLU_RS25535	0.27	+0.7
5,698,286	-		PFLU_RS25535	0.27	-0.7
5,698,286	-		PFLU_RS25535	0.27	-0.3
5,698,286	-		PFLU_RS25535	0.27	+0.4
5,698,286	-		PFLU_RS25535	0.27	+0.1
5,698,286	-		PFLU_RS25535	0.27	-1.3
5,698,286	-		PFLU_RS25535	0.27	-1.8
5,698,325	+		PFLU_RS25535	0.31	+1.5
5,698,325	+		PFLU_RS25535	0.31	+1.7
5,698,326	-		PFLU_RS25535	0.31	-1.0
5,698,326	-		PFLU_RS25535	0.31	-1.5
5,698,626	+		PFLU_RS25535	0.65	-0.6
5,698,626	+		PFLU_RS25535	0.65	-1.4
5,698,627	-		PFLU_RS25535	0.65	+1.3
5,698,674	+		PFLU_RS25535	0.70	+0.8
5,698,719	+		PFLU_RS25535	0.75	+0.4
5,698,719	+		PFLU_RS25535	0.75	-0.1
5,698,719	+		PFLU_RS25535	0.75	+0.1
5,698,720	-		PFLU_RS25535	0.75	+0.1
5,698,720	-		PFLU_RS25535	0.75	-0.8
5,698,720	-		PFLU_RS25535	0.75	+0.9
5,698,720	-		PFLU_RS25535	0.75	+0.4
5,698,754	+		PFLU_RS25535	0.79	+1.0
5,698,754	+		PFLU_RS25535	0.79	-0.3
5,698,755	-		PFLU_RS25535	0.79	-0.9
5,698,755	-		PFLU_RS25535	0.79	+1.7
5,698,755	-		PFLU_RS25535	0.79	-0.9
5,698,755	-		PFLU_RS25535	0.79	+1.3
5,698,755	-		PFLU_RS25535	0.79	-0.6
5,698,755	-		PFLU_RS25535	0.79	-0.8
5,698,923	-				+0.2
5,698,976	+				+0.4
5,699,038	+				+0.5
5,699,039	-				+1.3
5,699,039	-				-2.2
5,699,039	-				-0.2
5,699,039	-				+0.5
5,699,039	-				+0.3
5,699,138	+		PFLU_RS25540	0.12	+0.5
5,699,180	+		PFLU_RS25540	0.15	-0.5
5,699,181	-		PFLU_RS25540	0.15	+0.2
5,699,181	-		PFLU_RS25540	0.15	+1.6
5,699,314	+		PFLU_RS25540	0.24	+0.3
5,699,314	+		PFLU_RS25540	0.24	+0.1
5,699,314	+		PFLU_RS25540	0.24	+0.3
5,699,314	+		PFLU_RS25540	0.24	+0.4
5,699,314	+		PFLU_RS25540	0.24	+0.1
5,699,314	+		PFLU_RS25540	0.24	-1.1
5,699,314	+		PFLU_RS25540	0.24	-0.0
5,699,314	+		PFLU_RS25540	0.24	-0.3
5,699,315	-		PFLU_RS25540	0.24	+0.5
5,699,315	-		PFLU_RS25540	0.24	-1.3
5,699,315	-		PFLU_RS25540	0.24	+0.1
5,699,315	-		PFLU_RS25540	0.24	-0.0
5,699,315	-		PFLU_RS25540	0.24	+0.4
5,699,315	-		PFLU_RS25540	0.24	+0.1
5,699,315	-		PFLU_RS25540	0.24	+0.3
5,699,315	-		PFLU_RS25540	0.24	-0.3
5,699,456	+		PFLU_RS25540	0.33	+0.5
5,699,456	+		PFLU_RS25540	0.33	+0.6
5,699,456	+		PFLU_RS25540	0.33	+0.5
5,699,456	+		PFLU_RS25540	0.33	-0.4
5,699,457	-		PFLU_RS25540	0.33	+0.2
5,699,746	+		PFLU_RS25540	0.52	-1.2
5,699,747	-		PFLU_RS25540	0.52	+0.4
5,699,801	+		PFLU_RS25540	0.56	-1.0
5,699,802	-		PFLU_RS25540	0.56	+0.4
5,699,802	-		PFLU_RS25540	0.56	-1.0
5,699,802	-		PFLU_RS25540	0.56	-0.5
5,699,802	-		PFLU_RS25540	0.56	-0.3
5,699,802	-		PFLU_RS25540	0.56	+0.4
5,700,008	+		PFLU_RS25540	0.69	+0.1
5,700,009	-		PFLU_RS25540	0.70	+0.1
5,700,046	+		PFLU_RS25540	0.72	-0.7
5,700,046	+		PFLU_RS25540	0.72	+0.4
5,700,047	-		PFLU_RS25540	0.72	-0.5
5,700,047	-		PFLU_RS25540	0.72	+0.6
5,700,047	-		PFLU_RS25540	0.72	-1.0
5,700,047	-		PFLU_RS25540	0.72	-0.9
5,700,051	-		PFLU_RS25540	0.72	+0.1
5,700,051	-		PFLU_RS25540	0.72	-0.5
5,700,236	+		PFLU_RS25540	0.85	+0.3
5,700,236	+		PFLU_RS25540	0.85	-1.0
5,700,237	-		PFLU_RS25540	0.85	+0.2
5,700,237	-		PFLU_RS25540	0.85	+0.5
5,700,237	-		PFLU_RS25540	0.85	+1.1
5,700,237	-		PFLU_RS25540	0.85	+1.1
5,700,452	+				+0.0
5,700,485	+				+0.8
5,700,485	+				+1.0
5,700,485	+				-0.0
5,700,485	+				+1.3
5,700,486	-				+1.5
5,700,486	-				+0.1
5,700,487	+				+0.7
5,700,487	+				-0.7
5,700,487	+				-1.2
5,700,487	+				-0.4
5,700,487	+				+0.5
5,700,487	+				-0.7
5,700,487	+				+1.3
5,700,487	+				+1.3
5,700,487	+				-2.4
5,700,487	+				-0.9
5,700,488	-				+0.5
5,700,488	-				-1.9
5,700,488	-				+0.5
5,700,488	-				+1.2
5,700,488	-				+1.3
5,700,491	+				-0.4
5,700,491	+				-0.3
5,700,491	+				-1.6
5,700,491	+				-0.9
5,700,491	+				-2.2
5,700,491	+				-1.1
5,700,491	+				+0.9
5,700,491	+				+0.5
5,700,491	+				+0.3
5,700,491	+				-1.4
5,700,491	+				-0.9
5,700,492	-				+0.3
5,700,492	-				-2.2
5,700,492	-				-1.7
5,700,492	-				+1.1
5,700,492	-				+0.8
5,700,492	-				+0.4
5,700,492	-				-0.1
5,700,492	-				-1.3
5,700,492	-				-0.9
5,700,493	+				-1.4
5,700,493	+				+0.5
5,700,493	+				-0.1
5,700,494	-				+0.5
5,700,494	-				-2.2
5,700,510	+				+0.5
5,700,511	-				+1.3
5,700,552	-				+1.7
5,700,552	-				-0.3
5,700,553	+				-0.6
5,700,553	+				-0.3
5,700,553	+				+1.3
5,700,553	+				-1.3
5,700,553	+				-1.7
5,700,553	+				-0.6
5,700,553	+				+0.6
5,700,554	-				+0.6
5,700,554	-				-0.9
5,700,554	-				+0.6
5,700,554	-				-0.6
5,700,554	-				-0.3
5,700,554	-				-0.3
5,700,554	-				+0.3
5,700,554	-				+0.7
5,700,554	-				-1.0
5,700,554	-				+0.7
5,700,554	-				-0.1
5,700,554	-				+1.0
5,700,554	-				-0.2
5,700,554	-				-0.9
5,700,554	-				+1.0
5,700,554	-				-0.3
5,700,554	-				-0.7
5,700,554	-				+0.1
5,700,554	-				-1.4
5,700,554	-				+0.3
5,700,554	-				+0.3
5,700,554	-				-0.3
5,700,554	-				-1.0
5,700,572	+				-0.5
5,700,584	+				+0.0
5,700,600	-				-0.5
5,700,714	+		PFLU_RS25545	0.12	+2.0
5,700,714	+		PFLU_RS25545	0.12	+0.2
5,700,714	+		PFLU_RS25545	0.12	-0.1
5,700,714	+		PFLU_RS25545	0.12	+0.6
5,700,714	+		PFLU_RS25545	0.12	-0.2
5,700,715	-		PFLU_RS25545	0.12	+0.3
5,700,715	-		PFLU_RS25545	0.12	+1.0
5,700,715	-		PFLU_RS25545	0.12	-1.5
5,700,715	-		PFLU_RS25545	0.12	+1.3
5,700,715	-		PFLU_RS25545	0.12	+0.6
5,700,831	+		PFLU_RS25545	0.24	+1.0
5,700,981	+		PFLU_RS25545	0.40	-0.8
5,700,981	+		PFLU_RS25545	0.40	+0.3
5,700,981	+		PFLU_RS25545	0.40	+0.9
5,701,086	+		PFLU_RS25545	0.51	-0.7
5,701,086	+		PFLU_RS25545	0.51	+1.9
5,701,086	+		PFLU_RS25545	0.51	+0.1
5,701,086	+		PFLU_RS25545	0.51	+0.2
5,701,086	+		PFLU_RS25545	0.51	-0.5
5,701,086	+		PFLU_RS25545	0.51	-0.0
5,701,086	+		PFLU_RS25545	0.51	+0.3
5,701,086	+		PFLU_RS25545	0.51	+1.3
5,701,086	+		PFLU_RS25545	0.51	-0.5
5,701,086	+		PFLU_RS25545	0.51	-0.7
5,701,086	+		PFLU_RS25545	0.51	+0.6
5,701,086	+		PFLU_RS25545	0.51	-0.2
5,701,086	+		PFLU_RS25545	0.51	+0.1
5,701,086	+		PFLU_RS25545	0.51	+0.8
5,701,086	+		PFLU_RS25545	0.51	+1.8
5,701,086	+		PFLU_RS25545	0.51	+0.1
5,701,086	+		PFLU_RS25545	0.51	-0.9
5,701,086	+		PFLU_RS25545	0.51	+0.4
5,701,086	+		PFLU_RS25545	0.51	-0.6
5,701,086	+		PFLU_RS25545	0.51	+0.5
5,701,086	+		PFLU_RS25545	0.51	-0.0
5,701,086	+		PFLU_RS25545	0.51	+1.3
5,701,087	-		PFLU_RS25545	0.51	+0.4
5,701,087	-		PFLU_RS25545	0.51	+0.2
5,701,087	-		PFLU_RS25545	0.51	+0.3
5,701,087	-		PFLU_RS25545	0.51	-0.3
5,701,087	-		PFLU_RS25545	0.51	-1.0
5,701,087	-		PFLU_RS25545	0.51	+0.7
5,701,087	-		PFLU_RS25545	0.51	+0.6
5,701,087	-		PFLU_RS25545	0.51	+0.5
5,701,087	-		PFLU_RS25545	0.51	+1.0
5,701,087	-		PFLU_RS25545	0.51	+0.8
5,701,087	-		PFLU_RS25545	0.51	+0.9
5,701,087	-		PFLU_RS25545	0.51	-0.0
5,701,087	-		PFLU_RS25545	0.51	+0.3
5,701,087	-		PFLU_RS25545	0.51	-1.0
5,701,087	-		PFLU_RS25545	0.51	-1.0
5,701,110	+		PFLU_RS25545	0.54	-1.3
5,701,110	+		PFLU_RS25545	0.54	-2.2
5,701,111	-		PFLU_RS25545	0.54	-1.0
5,701,125	+		PFLU_RS25545	0.55	+2.5
5,701,126	-		PFLU_RS25545	0.55	+0.1
5,701,140	+		PFLU_RS25545	0.57	+0.9
5,701,140	+		PFLU_RS25545	0.57	+0.6
5,701,140	+		PFLU_RS25545	0.57	-0.5
5,701,141	-		PFLU_RS25545	0.57	-1.5
5,701,141	-		PFLU_RS25545	0.57	-0.3
5,701,203	+		PFLU_RS25545	0.64	+0.4
5,701,203	+		PFLU_RS25545	0.64	+1.7
5,701,203	+		PFLU_RS25545	0.64	-1.0
5,701,203	+		PFLU_RS25545	0.64	+0.8
5,701,203	+		PFLU_RS25545	0.64	+0.3
5,701,203	+		PFLU_RS25545	0.64	-0.3
5,701,203	+		PFLU_RS25545	0.64	-0.6
5,701,203	+		PFLU_RS25545	0.64	+1.7
5,701,203	+		PFLU_RS25545	0.64	+0.7
5,701,204	-		PFLU_RS25545	0.64	+0.1
5,701,204	-		PFLU_RS25545	0.64	+0.1
5,701,204	-		PFLU_RS25545	0.64	-0.6
5,701,204	-		PFLU_RS25545	0.64	-0.6
5,701,204	-		PFLU_RS25545	0.64	+0.6
5,701,204	-		PFLU_RS25545	0.64	+0.2
5,701,204	-		PFLU_RS25545	0.64	+0.8
5,701,204	-		PFLU_RS25545	0.64	-1.0
5,701,204	-		PFLU_RS25545	0.64	+0.3
5,701,239	+		PFLU_RS25545	0.67	-0.4
5,701,239	+		PFLU_RS25545	0.67	-0.4
5,701,240	-		PFLU_RS25545	0.68	-0.6
5,701,240	-		PFLU_RS25545	0.68	+0.6
5,701,240	-		PFLU_RS25545	0.68	+0.5
5,701,283	+		PFLU_RS25545	0.72	-0.4
5,701,283	+		PFLU_RS25545	0.72	+0.5
5,701,283	+		PFLU_RS25545	0.72	+1.0
5,701,302	+		PFLU_RS25545	0.74	-0.3
5,701,302	+		PFLU_RS25545	0.74	-0.2
5,701,302	+		PFLU_RS25545	0.74	+0.9
5,701,302	+		PFLU_RS25545	0.74	-1.7
5,701,302	+		PFLU_RS25545	0.74	+0.0
5,701,302	+		PFLU_RS25545	0.74	+1.7
5,701,302	+		PFLU_RS25545	0.74	-0.9
5,701,302	+		PFLU_RS25545	0.74	+1.5
5,701,302	+		PFLU_RS25545	0.74	+0.4
5,701,302	+		PFLU_RS25545	0.74	-0.2
5,701,302	+		PFLU_RS25545	0.74	-0.2
5,701,303	-		PFLU_RS25545	0.74	-0.9
5,701,303	-		PFLU_RS25545	0.74	+0.3
5,701,303	-		PFLU_RS25545	0.74	-0.1
5,701,303	-		PFLU_RS25545	0.74	-0.3
5,701,303	-		PFLU_RS25545	0.74	-1.4
5,701,303	-		PFLU_RS25545	0.74	+1.3
5,701,303	-		PFLU_RS25545	0.74	+0.5
5,701,303	-		PFLU_RS25545	0.74	+0.8
5,701,337	-		PFLU_RS25545	0.78	-0.9
5,701,403	+		PFLU_RS25545	0.85	-2.8
5,701,403	+		PFLU_RS25545	0.85	-0.8
5,701,404	-		PFLU_RS25545	0.85	+0.3
5,701,404	-		PFLU_RS25545	0.85	+0.1
5,701,404	-		PFLU_RS25545	0.85	-1.0
5,701,404	-		PFLU_RS25545	0.85	-1.4
5,701,422	+		PFLU_RS25545	0.87	-1.5
5,701,422	+		PFLU_RS25545	0.87	-1.3
5,701,422	+		PFLU_RS25545	0.87	+0.6
5,701,422	+		PFLU_RS25545	0.87	+0.9
5,701,422	+		PFLU_RS25545	0.87	+0.1
5,701,422	+		PFLU_RS25545	0.87	+0.8
5,701,422	+		PFLU_RS25545	0.87	+0.8
5,701,422	+		PFLU_RS25545	0.87	+1.3
5,701,422	+		PFLU_RS25545	0.87	-1.3
5,701,423	-		PFLU_RS25545	0.87	-0.6
5,701,423	-		PFLU_RS25545	0.87	-0.5
5,701,423	-		PFLU_RS25545	0.87	-1.4
5,701,423	-		PFLU_RS25545	0.87	-2.3
5,701,423	-		PFLU_RS25545	0.87	+0.0
5,701,457	+				-0.3
5,701,457	+				-0.1
5,701,457	+				-0.2
5,701,458	-				-0.2
5,701,458	-				-2.2
5,701,458	-				-0.5