Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19350

Experiment: Citraconic 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citraconic 20 mM (C)
4,375,349	+		PFLU_RS19345	0.52	+0.3
4,375,379	+		PFLU_RS19345	0.54	-1.7
4,375,428	+		PFLU_RS19345	0.57	-0.1
4,375,428	+		PFLU_RS19345	0.57	-1.3
4,375,429	-		PFLU_RS19345	0.57	-0.4
4,375,429	-		PFLU_RS19345	0.57	-2.4
4,375,429	-		PFLU_RS19345	0.57	-1.3
4,375,434	+		PFLU_RS19345	0.57	-0.9
4,375,434	+		PFLU_RS19345	0.57	-0.3
4,375,434	+		PFLU_RS19345	0.57	-0.2
4,375,435	-		PFLU_RS19345	0.57	+2.5
4,375,435	-		PFLU_RS19345	0.57	+2.0
4,375,435	-		PFLU_RS19345	0.57	-0.3
4,375,435	-		PFLU_RS19345	0.57	+1.3
4,375,435	-		PFLU_RS19345	0.57	-0.0
4,375,435	-		PFLU_RS19345	0.57	-0.1
4,375,435	-		PFLU_RS19345	0.57	-0.1
4,375,435	-		PFLU_RS19345	0.57	-1.9
4,375,542	+		PFLU_RS19345	0.64	+1.3
4,375,542	+		PFLU_RS19345	0.64	+0.1
4,375,542	+		PFLU_RS19345	0.64	+0.7
4,375,542	+		PFLU_RS19345	0.64	-0.4
4,375,542	+		PFLU_RS19345	0.64	-1.9
4,375,543	-		PFLU_RS19345	0.64	+0.6
4,375,543	-		PFLU_RS19345	0.64	-0.9
4,375,543	-		PFLU_RS19345	0.64	-0.5
4,375,543	-		PFLU_RS19345	0.64	-0.8
4,375,543	-		PFLU_RS19345	0.64	-0.4
4,375,543	-		PFLU_RS19345	0.64	+0.2
4,375,543	-		PFLU_RS19345	0.64	-0.5
4,375,543	-		PFLU_RS19345	0.64	-0.7
4,375,543	-		PFLU_RS19345	0.64	+0.1
4,375,552	-		PFLU_RS19345	0.64	-0.6
4,375,552	-		PFLU_RS19345	0.64	+0.9
4,375,559	+		PFLU_RS19345	0.65	+0.3
4,375,559	+		PFLU_RS19345	0.65	+0.5
4,375,559	+		PFLU_RS19345	0.65	+0.1
4,375,559	+		PFLU_RS19345	0.65	+0.2
4,375,560	-		PFLU_RS19345	0.65	-0.5
4,375,579	+		PFLU_RS19345	0.66	+1.8
4,375,599	+		PFLU_RS19345	0.67	-1.1
4,375,600	-		PFLU_RS19345	0.67	+0.5
4,375,600	-		PFLU_RS19345	0.67	+0.6
4,375,670	+		PFLU_RS19345	0.72	-1.4
4,375,671	-		PFLU_RS19345	0.72	+0.0
4,375,671	-		PFLU_RS19345	0.72	-0.9
4,375,693	+		PFLU_RS19345	0.73	+0.3
4,375,693	+		PFLU_RS19345	0.73	+0.8
4,375,693	+		PFLU_RS19345	0.73	-0.4
4,375,693	+		PFLU_RS19345	0.73	-0.4
4,375,694	-		PFLU_RS19345	0.73	-0.1
4,375,694	-		PFLU_RS19345	0.73	-1.4
4,375,694	-		PFLU_RS19345	0.73	-2.3
4,375,694	-		PFLU_RS19345	0.73	+2.7
4,375,694	-		PFLU_RS19345	0.73	-0.3
4,375,694	-		PFLU_RS19345	0.73	-0.9
4,375,759	+		PFLU_RS19345	0.77	-0.4
4,375,759	+		PFLU_RS19345	0.77	-0.3
4,375,759	+		PFLU_RS19345	0.77	-0.7
4,375,759	+		PFLU_RS19345	0.77	-0.3
4,375,760	-		PFLU_RS19345	0.77	+0.9
4,375,777	-		PFLU_RS19345	0.78	+0.2
4,375,828	+		PFLU_RS19345	0.81	-0.7
4,375,828	+		PFLU_RS19345	0.81	-1.3
4,375,828	+		PFLU_RS19345	0.81	-0.0
4,375,828	+		PFLU_RS19345	0.81	-0.7
4,375,828	+		PFLU_RS19345	0.81	-0.4
4,375,828	+		PFLU_RS19345	0.81	+0.9
4,375,828	+		PFLU_RS19345	0.81	-0.6
4,375,828	+		PFLU_RS19345	0.81	+0.9
4,375,828	+		PFLU_RS19345	0.81	+1.5
4,375,828	+		PFLU_RS19345	0.81	-0.0
4,375,829	-		PFLU_RS19345	0.81	-1.1
4,375,829	-		PFLU_RS19345	0.81	+0.7
4,375,829	-		PFLU_RS19345	0.81	-1.6
4,375,829	-		PFLU_RS19345	0.81	+0.2
4,375,829	-		PFLU_RS19345	0.81	+1.0
4,375,829	-		PFLU_RS19345	0.81	+0.4
4,375,856	+		PFLU_RS19345	0.83	+0.3
4,375,868	+		PFLU_RS19345	0.84	+1.4
4,375,916	-		PFLU_RS19345	0.87	-1.6
4,375,916	-		PFLU_RS19345	0.87	+0.3
4,375,916	-		PFLU_RS19345	0.87	-0.7
4,375,942	+		PFLU_RS19345	0.88	-0.6
4,375,943	-		PFLU_RS19345	0.88	+1.6
4,375,956	+		PFLU_RS19345	0.89	-0.4
4,375,956	+		PFLU_RS19345	0.89	-0.7
4,375,956	+		PFLU_RS19345	0.89	+0.0
4,375,956	+		PFLU_RS19345	0.89	+0.7
4,375,957	-		PFLU_RS19345	0.89	+0.5
4,375,957	-		PFLU_RS19345	0.89	+1.5
4,376,034	+				-0.1
4,376,055	+				-0.4
4,376,056	-				+0.6
4,376,056	-				+1.0
4,376,180	-				-0.0
4,376,180	-				+1.1
4,376,180	-				+0.9
4,376,180	-				+1.0
4,376,206	-				-0.6
4,376,249	+				-0.3
4,376,261	-				+0.7
4,376,261	-				+1.0
4,376,265	-				-1.4
4,376,272	+				+0.5
4,376,273	-				-1.3
4,376,293	+				-0.7
4,376,293	+				+0.9
4,376,293	+				+0.1
4,376,293	+				-0.3
4,376,293	+				-0.8
4,376,352	+				-4.0
4,376,353	-				-3.8
4,376,353	-				-2.4
4,376,453	+		PFLU_RS19350	0.30	-2.7
4,376,472	+		PFLU_RS19350	0.34	-4.2
4,376,472	+		PFLU_RS19350	0.34	-4.0
4,376,472	+		PFLU_RS19350	0.34	-2.3
4,376,472	+		PFLU_RS19350	0.34	-0.6
4,376,472	+		PFLU_RS19350	0.34	-2.9
4,376,473	-		PFLU_RS19350	0.34	-1.4
4,376,496	+		PFLU_RS19350	0.39	-3.1
4,376,496	+		PFLU_RS19350	0.39	-3.0
4,376,496	+		PFLU_RS19350	0.39	-0.3
4,376,496	+		PFLU_RS19350	0.39	-2.7
4,376,496	+		PFLU_RS19350	0.39	-2.3
4,376,497	-		PFLU_RS19350	0.39	-2.6
4,376,497	-		PFLU_RS19350	0.39	-1.6
4,376,497	-		PFLU_RS19350	0.39	-2.4
4,376,497	-		PFLU_RS19350	0.39	-2.7
4,376,497	-		PFLU_RS19350	0.39	-3.1
4,376,497	-		PFLU_RS19350	0.39	-4.1
4,376,576	+		PFLU_RS19350	0.55	+0.7
4,376,576	+		PFLU_RS19350	0.55	-0.5
4,376,576	+		PFLU_RS19350	0.55	-2.1
4,376,577	-		PFLU_RS19350	0.55	-2.6
4,376,577	-		PFLU_RS19350	0.55	-1.3
4,376,577	-		PFLU_RS19350	0.55	-3.3
4,376,577	-		PFLU_RS19350	0.55	-2.0
4,376,577	-		PFLU_RS19350	0.55	-3.4
4,376,810	+				-3.0
4,376,810	+				-1.9
4,376,810	+				-2.0
4,376,811	-				-1.9
4,376,819	+				-2.0
4,376,819	+				-2.4
4,376,820	-				-4.3
4,376,869	-				-3.7
4,376,869	-				-3.4
4,376,872	+				-2.5
4,376,872	+				-3.4
4,376,873	-				-0.6
4,376,880	+				+1.1
4,376,881	-				-1.6
4,376,881	-				-2.9
4,376,891	+				+0.6
4,376,892	-				-0.9
4,376,892	-				-1.3
4,376,902	+				+0.4
4,376,902	+				-0.0
4,376,953	+				+0.7
4,376,953	+				+0.3
4,376,953	+				+1.3
4,376,953	+				-1.0
4,376,954	-				-2.3
4,376,954	-				-2.4
4,376,954	-				-1.9
4,376,954	-				-3.4
4,376,978	+				-1.6
4,376,978	+				-1.6
4,376,979	-				-1.9
4,376,979	-				-3.1
4,376,979	-				-3.3
4,376,979	-				-3.7
4,376,979	-				-4.3
4,377,064	+				-3.3
4,377,064	+				-2.4
4,377,064	+				-2.2
4,377,064	+				-2.1
4,377,065	-				-3.1
4,377,065	-				-3.6
4,377,065	-				-1.4
4,377,113	+		PFLU_RS19355	0.10	-3.0
4,377,113	+		PFLU_RS19355	0.10	-3.4
4,377,114	-		PFLU_RS19355	0.10	-2.4
4,377,114	-		PFLU_RS19355	0.10	-2.4
4,377,114	-		PFLU_RS19355	0.10	-3.6
4,377,114	-		PFLU_RS19355	0.10	-2.0
4,377,304	+		PFLU_RS19355	0.26	-2.3
4,377,304	+		PFLU_RS19355	0.26	-3.2
4,377,304	+		PFLU_RS19355	0.26	-1.6
4,377,304	+		PFLU_RS19355	0.26	+0.1
4,377,304	+		PFLU_RS19355	0.26	-2.7
4,377,304	+		PFLU_RS19355	0.26	-3.4
4,377,304	+		PFLU_RS19355	0.26	-1.4
4,377,304	+		PFLU_RS19355	0.26	-3.5
4,377,304	+		PFLU_RS19355	0.26	-1.3
4,377,305	-		PFLU_RS19355	0.26	-2.7
4,377,305	-		PFLU_RS19355	0.26	-2.1
4,377,305	-		PFLU_RS19355	0.26	-3.6
4,377,305	-		PFLU_RS19355	0.26	-3.4
4,377,305	-		PFLU_RS19355	0.26	-2.4
4,377,305	-		PFLU_RS19355	0.26	-1.6
4,377,385	+		PFLU_RS19355	0.32	-1.3
4,377,496	+		PFLU_RS19355	0.41	-1.8
4,377,496	+		PFLU_RS19355	0.41	-2.4
4,377,496	+		PFLU_RS19355	0.41	-2.9
4,377,496	+		PFLU_RS19355	0.41	-2.1
4,377,496	+		PFLU_RS19355	0.41	-1.6
4,377,496	+		PFLU_RS19355	0.41	-1.3
4,377,496	+		PFLU_RS19355	0.41	-3.1
4,377,496	+		PFLU_RS19355	0.41	-2.4
4,377,497	-		PFLU_RS19355	0.41	-2.6
4,377,497	-		PFLU_RS19355	0.41	-1.9
4,377,497	-		PFLU_RS19355	0.41	-2.7
4,377,497	-		PFLU_RS19355	0.41	-2.7
4,377,497	-		PFLU_RS19355	0.41	-1.6
4,377,497	-		PFLU_RS19355	0.41	-2.6
4,377,497	-		PFLU_RS19355	0.41	-2.7
4,377,497	-		PFLU_RS19355	0.41	-3.6
4,377,497	-		PFLU_RS19355	0.41	-3.1
4,377,497	-		PFLU_RS19355	0.41	-3.9
4,377,497	-		PFLU_RS19355	0.41	-3.0
4,377,497	-		PFLU_RS19355	0.41	-1.3
4,377,497	-		PFLU_RS19355	0.41	-1.4
4,377,497	-		PFLU_RS19355	0.41	-2.9
4,377,497	-		PFLU_RS19355	0.41	-3.0
4,377,554	+		PFLU_RS19355	0.46	-3.2
4,377,554	+		PFLU_RS19355	0.46	-1.4
4,377,555	-		PFLU_RS19355	0.46	-2.6
4,377,555	-		PFLU_RS19355	0.46	-3.7
4,377,679	+		PFLU_RS19355	0.56	-1.7
4,377,680	-		PFLU_RS19355	0.56	-2.7
4,377,782	+		PFLU_RS19355	0.64	-0.9
4,377,782	+		PFLU_RS19355	0.64	-4.0
4,377,782	+		PFLU_RS19355	0.64	-0.9
4,377,782	+		PFLU_RS19355	0.64	-3.5
4,377,783	-		PFLU_RS19355	0.64	-4.6
4,377,783	-		PFLU_RS19355	0.64	-2.7
4,377,783	-		PFLU_RS19355	0.64	-1.3
4,377,783	-		PFLU_RS19355	0.64	-2.9
4,377,783	-		PFLU_RS19355	0.64	-0.9
4,377,783	-		PFLU_RS19355	0.64	-2.9