Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01095

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS01095 and BPHYT_RS01100 are separated by 9 nucleotidesBPHYT_RS01100 and BPHYT_RS01105 overlap by 8 nucleotides BPHYT_RS01095: BPHYT_RS01095 - hypothetical protein, at 254,041 to 254,490 _RS01095 BPHYT_RS01100: BPHYT_RS01100 - protein mobD, at 254,500 to 255,204 _RS01100 BPHYT_RS01105: BPHYT_RS01105 - hypothetical protein, at 255,197 to 255,916 _RS01105 Position (kb) 254 255Strain fitness (log2 ratio) -1 0 1 2 3at 253.099 kb on + strandat 253.171 kb on - strandat 253.211 kb on + strandat 253.266 kb on + strandat 253.314 kb on + strandat 253.416 kb on + strandat 253.494 kb on - strandat 253.531 kb on + strandat 253.585 kb on + strandat 253.824 kb on - strandat 253.854 kb on + strandat 254.197 kb on + strand, within BPHYT_RS01095at 254.536 kb on + strandat 254.536 kb on + strandat 254.537 kb on - strandat 254.537 kb on - strandat 254.537 kb on - strandat 254.623 kb on - strand, within BPHYT_RS01100at 254.672 kb on + strandat 254.673 kb on - strand, within BPHYT_RS01100at 254.740 kb on + strand, within BPHYT_RS01100at 254.962 kb on + strand, within BPHYT_RS01100at 254.963 kb on - strand, within BPHYT_RS01100at 254.965 kb on + strand, within BPHYT_RS01100at 254.966 kb on - strand, within BPHYT_RS01100at 254.966 kb on - strand, within BPHYT_RS01100at 254.993 kb on - strand, within BPHYT_RS01100at 255.102 kb on - strand, within BPHYT_RS01100at 255.166 kb on + strandat 255.167 kb on - strandat 255.167 kb on - strandat 255.167 kb on - strandat 255.371 kb on + strand, within BPHYT_RS01105at 255.374 kb on + strand, within BPHYT_RS01105at 255.386 kb on + strand, within BPHYT_RS01105at 255.387 kb on - strand, within BPHYT_RS01105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
253,099 + -0.4
253,171 - +0.3
253,211 + -0.1
253,266 + +0.2
253,314 + +0.5
253,416 + -0.9
253,494 - +0.7
253,531 + -0.4
253,585 + +0.2
253,824 - +0.3
253,854 + +0.7
254,197 + BPHYT_RS01095 0.35 -1.2
254,536 + -1.3
254,536 + -0.8
254,537 - +0.3
254,537 - +0.2
254,537 - +1.9
254,623 - BPHYT_RS01100 0.17 -0.5
254,672 + -0.4
254,673 - BPHYT_RS01100 0.25 +0.3
254,740 + BPHYT_RS01100 0.34 +0.6
254,962 + BPHYT_RS01100 0.66 -0.7
254,963 - BPHYT_RS01100 0.66 -0.5
254,965 + BPHYT_RS01100 0.66 -0.3
254,966 - BPHYT_RS01100 0.66 +1.1
254,966 - BPHYT_RS01100 0.66 -1.0
254,993 - BPHYT_RS01100 0.70 +2.4
255,102 - BPHYT_RS01100 0.85 -0.3
255,166 + +0.4
255,167 - +0.6
255,167 - +0.7
255,167 - -1.6
255,371 + BPHYT_RS01105 0.24 -0.7
255,374 + BPHYT_RS01105 0.25 -0.5
255,386 + BPHYT_RS01105 0.26 +3.7
255,387 - BPHYT_RS01105 0.26 +0.6

Or see this region's nucleotide sequence