Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03763

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03762 and MPMX19_03763 overlap by 11 nucleotidesMPMX19_03763 and MPMX19_03764 are separated by 391 nucleotides MPMX19_03762: MPMX19_03762 - hypothetical protein, at 1,137 to 2,159 _03762 MPMX19_03763: MPMX19_03763 - Nucleoid occlusion protein, at 2,149 to 3,003 _03763 MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918 _03764 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1 2at 3.012 kb on - strandat 3.012 kb on - strandat 3.012 kb on - strandat 3.012 kb on - strandat 3.076 kb on + strandat 3.188 kb on + strandat 3.189 kb on - strandat 3.320 kb on - strandat 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.560 kb on + strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.561 kb on - strand, within MPMX19_03764at 3.584 kb on - strand, within MPMX19_03764

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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3,012 - -0.7
3,012 - -0.6
3,012 - -0.2
3,012 - +0.0
3,076 + +0.3
3,188 + -1.5
3,189 - +0.4
3,320 - -1.0
3,560 + MPMX19_03764 0.11 -0.5
3,560 + MPMX19_03764 0.11 -1.3
3,560 + MPMX19_03764 0.11 -0.2
3,560 + MPMX19_03764 0.11 -0.6
3,560 + MPMX19_03764 0.11 +1.8
3,560 + MPMX19_03764 0.11 +0.8
3,560 + MPMX19_03764 0.11 +0.3
3,560 + MPMX19_03764 0.11 -0.4
3,560 + MPMX19_03764 0.11 -0.7
3,560 + MPMX19_03764 0.11 +0.0
3,561 - MPMX19_03764 0.11 +0.5
3,561 - MPMX19_03764 0.11 +0.8
3,561 - MPMX19_03764 0.11 -0.2
3,561 - MPMX19_03764 0.11 -0.5
3,561 - MPMX19_03764 0.11 -1.5
3,561 - MPMX19_03764 0.11 -1.5
3,561 - MPMX19_03764 0.11 +0.5
3,561 - MPMX19_03764 0.11 +0.3
3,561 - MPMX19_03764 0.11 -0.3
3,561 - MPMX19_03764 0.11 +0.4
3,584 - MPMX19_03764 0.12 -0.2

Or see this region's nucleotide sequence