Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03299

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03297 and MPMX19_03298 are separated by 11 nucleotidesMPMX19_03298 and MPMX19_03299 are separated by 29 nucleotidesMPMX19_03299 and MPMX19_03300 are separated by 227 nucleotides MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803 _03297 MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546 _03298 MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475 _03299 MPMX19_03300: MPMX19_03300 - Erythritol/L-threitol-binding protein, at 646,703 to 648,055 _03300 Position (kb) 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 644.808 kb on + strandat 645.008 kb on + strand, within MPMX19_03298at 645.008 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.462 kb on - strand, within MPMX19_03298at 645.644 kb on + strandat 645.644 kb on + strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.583 kb on - strandat 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.841 kb on + strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 646.842 kb on - strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.036 kb on + strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.037 kb on - strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.327 kb on + strand, within MPMX19_03300at 647.328 kb on - strand, within MPMX19_03300at 647.328 kb on - strand, within MPMX19_03300at 647.394 kb on - strand, within MPMX19_03300

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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644,808 + -1.5
645,008 + MPMX19_03298 0.26 +0.3
645,008 + MPMX19_03298 0.26 -0.0
645,461 + MPMX19_03298 0.88 -0.9
645,461 + MPMX19_03298 0.88 +0.1
645,462 - MPMX19_03298 0.88 -0.3
645,644 + +0.6
645,644 + +0.9
645,645 - +1.3
645,645 - -0.8
645,645 - +0.3
645,645 - -2.8
645,645 - -0.2
645,645 - -0.2
645,645 - -1.4
645,934 + MPMX19_03299 0.40 +0.6
645,934 + MPMX19_03299 0.40 +1.8
645,934 + MPMX19_03299 0.40 -1.0
645,934 + MPMX19_03299 0.40 -2.0
645,934 + MPMX19_03299 0.40 -0.5
645,934 + MPMX19_03299 0.40 +1.1
645,934 + MPMX19_03299 0.40 -2.8
645,935 - MPMX19_03299 0.40 -0.6
645,935 - MPMX19_03299 0.40 -0.1
645,935 - MPMX19_03299 0.40 +1.0
645,935 - MPMX19_03299 0.40 -0.7
645,935 - MPMX19_03299 0.40 +1.2
646,048 + MPMX19_03299 0.52 -2.3
646,048 + MPMX19_03299 0.52 -0.4
646,049 - MPMX19_03299 0.53 -0.6
646,049 - MPMX19_03299 0.53 +0.6
646,049 - MPMX19_03299 0.53 -0.0
646,049 - MPMX19_03299 0.53 -0.4
646,049 - MPMX19_03299 0.53 +1.4
646,138 + MPMX19_03299 0.62 -1.4
646,138 + MPMX19_03299 0.62 -0.8
646,138 + MPMX19_03299 0.62 +0.1
646,138 + MPMX19_03299 0.62 +0.1
646,138 + MPMX19_03299 0.62 -0.7
646,139 - MPMX19_03299 0.63 +0.6
646,139 - MPMX19_03299 0.63 +0.3
646,139 - MPMX19_03299 0.63 -0.8
646,139 - MPMX19_03299 0.63 -0.7
646,139 - MPMX19_03299 0.63 -0.3
646,583 - -1.4
646,841 + MPMX19_03300 0.10 -0.3
646,841 + MPMX19_03300 0.10 +1.0
646,841 + MPMX19_03300 0.10 -0.4
646,841 + MPMX19_03300 0.10 -0.2
646,842 - MPMX19_03300 0.10 -1.2
646,842 - MPMX19_03300 0.10 +1.6
646,842 - MPMX19_03300 0.10 -0.2
646,842 - MPMX19_03300 0.10 +0.8
647,036 + MPMX19_03300 0.25 -1.4
647,036 + MPMX19_03300 0.25 -1.6
647,036 + MPMX19_03300 0.25 -0.0
647,037 - MPMX19_03300 0.25 -0.0
647,037 - MPMX19_03300 0.25 +1.0
647,037 - MPMX19_03300 0.25 +0.6
647,037 - MPMX19_03300 0.25 -0.2
647,037 - MPMX19_03300 0.25 +0.2
647,037 - MPMX19_03300 0.25 +0.8
647,037 - MPMX19_03300 0.25 +1.0
647,327 + MPMX19_03300 0.46 -0.2
647,327 + MPMX19_03300 0.46 -0.3
647,327 + MPMX19_03300 0.46 -1.0
647,327 + MPMX19_03300 0.46 -1.0
647,327 + MPMX19_03300 0.46 +1.3
647,328 - MPMX19_03300 0.46 -2.0
647,328 - MPMX19_03300 0.46 -0.2
647,394 - MPMX19_03300 0.51 +0.6

Or see this region's nucleotide sequence