Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02603 and MPMX20_02604 overlap by 7 nucleotides MPMX20_02604 and MPMX20_02605 overlap by 4 nucleotides
MPMX20_02603: MPMX20_02603 - hypothetical protein, at 2,738,398 to 2,739,522
_02603
MPMX20_02604: MPMX20_02604 - 2-alkyl-3-oxoalkanoate reductase, at 2,739,516 to 2,740,484
_02604
MPMX20_02605: MPMX20_02605 - hypothetical protein, at 2,740,481 to 2,741,593
_02605
Position (kb)
2739
2740
2741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2738.525 kb on - strand, within MPMX20_02603 at 2738.566 kb on + strand, within MPMX20_02603 at 2738.566 kb on + strand, within MPMX20_02603 at 2738.566 kb on + strand, within MPMX20_02603 at 2738.574 kb on - strand, within MPMX20_02603 at 2738.596 kb on - strand, within MPMX20_02603 at 2738.648 kb on + strand, within MPMX20_02603 at 2738.656 kb on - strand, within MPMX20_02603 at 2738.656 kb on - strand, within MPMX20_02603 at 2738.781 kb on - strand, within MPMX20_02603 at 2738.796 kb on - strand, within MPMX20_02603 at 2738.796 kb on - strand, within MPMX20_02603 at 2738.796 kb on - strand, within MPMX20_02603 at 2738.831 kb on - strand, within MPMX20_02603 at 2738.848 kb on - strand, within MPMX20_02603 at 2738.918 kb on + strand, within MPMX20_02603 at 2738.986 kb on + strand, within MPMX20_02603 at 2738.986 kb on + strand, within MPMX20_02603 at 2738.994 kb on - strand, within MPMX20_02603 at 2739.053 kb on + strand, within MPMX20_02603 at 2739.053 kb on + strand, within MPMX20_02603 at 2739.058 kb on + strand, within MPMX20_02603 at 2739.058 kb on + strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.061 kb on - strand, within MPMX20_02603 at 2739.074 kb on + strand, within MPMX20_02603 at 2739.161 kb on + strand, within MPMX20_02603 at 2739.161 kb on + strand, within MPMX20_02603 at 2739.161 kb on + strand, within MPMX20_02603 at 2739.161 kb on + strand, within MPMX20_02603 at 2739.161 kb on + strand, within MPMX20_02603 at 2739.169 kb on - strand, within MPMX20_02603 at 2739.169 kb on - strand, within MPMX20_02603 at 2739.169 kb on - strand, within MPMX20_02603 at 2739.169 kb on - strand, within MPMX20_02603 at 2739.171 kb on + strand, within MPMX20_02603 at 2739.229 kb on - strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.238 kb on + strand, within MPMX20_02603 at 2739.246 kb on - strand, within MPMX20_02603 at 2739.246 kb on - strand, within MPMX20_02603 at 2739.246 kb on - strand, within MPMX20_02603 at 2739.257 kb on + strand, within MPMX20_02603 at 2739.265 kb on - strand, within MPMX20_02603 at 2739.279 kb on + strand, within MPMX20_02603 at 2739.391 kb on + strand, within MPMX20_02603 at 2739.514 kb on + strand at 2739.522 kb on - strand at 2739.532 kb on + strand at 2739.532 kb on + strand at 2739.622 kb on + strand, within MPMX20_02604 at 2739.622 kb on - strand, within MPMX20_02604 at 2739.730 kb on + strand, within MPMX20_02604 at 2739.914 kb on + strand, within MPMX20_02604 at 2739.914 kb on + strand, within MPMX20_02604 at 2739.922 kb on - strand, within MPMX20_02604 at 2739.927 kb on + strand, within MPMX20_02604 at 2739.927 kb on + strand, within MPMX20_02604 at 2739.940 kb on - strand, within MPMX20_02604 at 2739.981 kb on + strand, within MPMX20_02604 at 2739.989 kb on - strand, within MPMX20_02604 at 2740.036 kb on + strand, within MPMX20_02604 at 2740.052 kb on - strand, within MPMX20_02604 at 2740.117 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.127 kb on + strand, within MPMX20_02604 at 2740.129 kb on + strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.135 kb on - strand, within MPMX20_02604 at 2740.225 kb on - strand, within MPMX20_02604 at 2740.254 kb on + strand, within MPMX20_02604 at 2740.263 kb on + strand, within MPMX20_02604 at 2740.264 kb on + strand, within MPMX20_02604 at 2740.271 kb on - strand, within MPMX20_02604 at 2740.279 kb on - strand, within MPMX20_02604 at 2740.305 kb on + strand, within MPMX20_02604 at 2740.305 kb on + strand, within MPMX20_02604 at 2740.331 kb on + strand, within MPMX20_02604 at 2740.331 kb on + strand, within MPMX20_02604 at 2740.339 kb on - strand, within MPMX20_02604 at 2740.339 kb on - strand, within MPMX20_02604 at 2740.508 kb on + strand at 2740.509 kb on - strand at 2740.585 kb on - strand at 2740.616 kb on + strand, within MPMX20_02605 at 2740.624 kb on - strand, within MPMX20_02605 at 2740.731 kb on - strand, within MPMX20_02605 at 2740.742 kb on + strand, within MPMX20_02605 at 2740.750 kb on - strand, within MPMX20_02605 at 2740.760 kb on - strand, within MPMX20_02605 at 2740.782 kb on + strand, within MPMX20_02605 at 2740.785 kb on - strand, within MPMX20_02605 at 2740.790 kb on - strand, within MPMX20_02605 at 2740.797 kb on - strand, within MPMX20_02605 at 2740.797 kb on - strand, within MPMX20_02605 at 2740.801 kb on + strand, within MPMX20_02605 at 2740.809 kb on - strand, within MPMX20_02605 at 2740.848 kb on + strand, within MPMX20_02605 at 2740.864 kb on + strand, within MPMX20_02605 at 2740.864 kb on + strand, within MPMX20_02605 at 2740.864 kb on + strand, within MPMX20_02605 at 2740.872 kb on - strand, within MPMX20_02605 at 2740.914 kb on + strand, within MPMX20_02605 at 2740.939 kb on - strand, within MPMX20_02605 at 2740.939 kb on - strand, within MPMX20_02605 at 2740.939 kb on - strand, within MPMX20_02605 at 2740.949 kb on + strand, within MPMX20_02605 at 2740.958 kb on - strand, within MPMX20_02605 at 2740.988 kb on - strand, within MPMX20_02605 at 2741.036 kb on - strand, within MPMX20_02605 at 2741.058 kb on - strand, within MPMX20_02605 at 2741.066 kb on + strand, within MPMX20_02605 at 2741.074 kb on - strand, within MPMX20_02605 at 2741.094 kb on - strand, within MPMX20_02605 at 2741.312 kb on - strand, within MPMX20_02605 at 2741.325 kb on - strand, within MPMX20_02605 at 2741.337 kb on + strand, within MPMX20_02605 at 2741.345 kb on - strand, within MPMX20_02605 at 2741.430 kb on - strand, within MPMX20_02605 at 2741.451 kb on + strand, within MPMX20_02605 at 2741.459 kb on - strand, within MPMX20_02605 at 2741.459 kb on - strand, within MPMX20_02605 at 2741.461 kb on + strand, within MPMX20_02605 at 2741.461 kb on + strand, within MPMX20_02605 at 2741.461 kb on + strand, within MPMX20_02605 at 2741.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 2,738,525 - MPMX20_02603 0.11 -0.6 2,738,566 + MPMX20_02603 0.15 -0.0 2,738,566 + MPMX20_02603 0.15 -0.2 2,738,566 + MPMX20_02603 0.15 -1.0 2,738,574 - MPMX20_02603 0.16 -0.0 2,738,596 - MPMX20_02603 0.18 -0.3 2,738,648 + MPMX20_02603 0.22 -1.4 2,738,656 - MPMX20_02603 0.23 +1.1 2,738,656 - MPMX20_02603 0.23 -2.0 2,738,781 - MPMX20_02603 0.34 +0.0 2,738,796 - MPMX20_02603 0.35 +1.9 2,738,796 - MPMX20_02603 0.35 +0.0 2,738,796 - MPMX20_02603 0.35 -0.6 2,738,831 - MPMX20_02603 0.38 -0.1 2,738,848 - MPMX20_02603 0.40 -1.4 2,738,918 + MPMX20_02603 0.46 +1.0 2,738,986 + MPMX20_02603 0.52 +0.5 2,738,986 + MPMX20_02603 0.52 -0.8 2,738,994 - MPMX20_02603 0.53 -1.2 2,739,053 + MPMX20_02603 0.58 +1.0 2,739,053 + MPMX20_02603 0.58 -1.3 2,739,058 + MPMX20_02603 0.59 -0.8 2,739,058 + MPMX20_02603 0.59 -3.0 2,739,061 - MPMX20_02603 0.59 -1.0 2,739,061 - MPMX20_02603 0.59 -0.2 2,739,061 - MPMX20_02603 0.59 -0.0 2,739,061 - MPMX20_02603 0.59 -0.3 2,739,061 - MPMX20_02603 0.59 -0.4 2,739,061 - MPMX20_02603 0.59 -0.8 2,739,061 - MPMX20_02603 0.59 -0.9 2,739,074 + MPMX20_02603 0.60 -3.0 2,739,161 + MPMX20_02603 0.68 +0.5 2,739,161 + MPMX20_02603 0.68 -0.7 2,739,161 + MPMX20_02603 0.68 -1.3 2,739,161 + MPMX20_02603 0.68 -0.0 2,739,161 + MPMX20_02603 0.68 +0.5 2,739,169 - MPMX20_02603 0.69 -0.8 2,739,169 - MPMX20_02603 0.69 -0.6 2,739,169 - MPMX20_02603 0.69 -0.4 2,739,169 - MPMX20_02603 0.69 -1.8 2,739,171 + MPMX20_02603 0.69 -1.1 2,739,229 - MPMX20_02603 0.74 -0.3 2,739,238 + MPMX20_02603 0.75 -2.0 2,739,238 + MPMX20_02603 0.75 -1.9 2,739,238 + MPMX20_02603 0.75 +0.2 2,739,238 + MPMX20_02603 0.75 +1.6 2,739,238 + MPMX20_02603 0.75 +0.6 2,739,238 + MPMX20_02603 0.75 +0.7 2,739,238 + MPMX20_02603 0.75 -1.1 2,739,238 + MPMX20_02603 0.75 -0.1 2,739,238 + MPMX20_02603 0.75 +0.3 2,739,238 + MPMX20_02603 0.75 +0.6 2,739,238 + MPMX20_02603 0.75 +1.3 2,739,238 + MPMX20_02603 0.75 -0.5 2,739,246 - MPMX20_02603 0.75 +0.0 2,739,246 - MPMX20_02603 0.75 -0.3 2,739,246 - MPMX20_02603 0.75 +0.8 2,739,257 + MPMX20_02603 0.76 -0.9 2,739,265 - MPMX20_02603 0.77 +1.2 2,739,279 + MPMX20_02603 0.78 -0.7 2,739,391 + MPMX20_02603 0.88 -0.7 2,739,514 + +0.5 2,739,522 - +1.2 2,739,532 + +0.2 2,739,532 + +0.9 2,739,622 + MPMX20_02604 0.11 +0.8 2,739,622 - MPMX20_02604 0.11 +0.6 2,739,730 + MPMX20_02604 0.22 -0.1 2,739,914 + MPMX20_02604 0.41 -1.8 2,739,914 + MPMX20_02604 0.41 +1.9 2,739,922 - MPMX20_02604 0.42 -0.5 2,739,927 + MPMX20_02604 0.42 -2.6 2,739,927 + MPMX20_02604 0.42 +1.4 2,739,940 - MPMX20_02604 0.44 +0.0 2,739,981 + MPMX20_02604 0.48 +0.1 2,739,989 - MPMX20_02604 0.49 -1.3 2,740,036 + MPMX20_02604 0.54 -0.1 2,740,052 - MPMX20_02604 0.55 -0.2 2,740,117 + MPMX20_02604 0.62 -0.8 2,740,127 + MPMX20_02604 0.63 -0.8 2,740,127 + MPMX20_02604 0.63 -0.0 2,740,127 + MPMX20_02604 0.63 -1.0 2,740,127 + MPMX20_02604 0.63 +0.1 2,740,127 + MPMX20_02604 0.63 -2.8 2,740,127 + MPMX20_02604 0.63 -1.1 2,740,127 + MPMX20_02604 0.63 +0.2 2,740,127 + MPMX20_02604 0.63 +0.5 2,740,127 + MPMX20_02604 0.63 +0.4 2,740,127 + MPMX20_02604 0.63 -0.1 2,740,127 + MPMX20_02604 0.63 +1.3 2,740,127 + MPMX20_02604 0.63 +1.7 2,740,127 + MPMX20_02604 0.63 +1.2 2,740,127 + MPMX20_02604 0.63 -0.7 2,740,127 + MPMX20_02604 0.63 +0.2 2,740,127 + MPMX20_02604 0.63 +0.1 2,740,127 + MPMX20_02604 0.63 +1.3 2,740,127 + MPMX20_02604 0.63 -1.0 2,740,127 + MPMX20_02604 0.63 +0.8 2,740,127 + MPMX20_02604 0.63 -1.7 2,740,127 + MPMX20_02604 0.63 -1.1 2,740,127 + MPMX20_02604 0.63 -2.0 2,740,127 + MPMX20_02604 0.63 -1.3 2,740,127 + MPMX20_02604 0.63 -0.2 2,740,127 + MPMX20_02604 0.63 +1.9 2,740,127 + MPMX20_02604 0.63 -0.2 2,740,127 + MPMX20_02604 0.63 -0.3 2,740,129 + MPMX20_02604 0.63 +0.5 2,740,135 - MPMX20_02604 0.64 -0.9 2,740,135 - MPMX20_02604 0.64 -2.0 2,740,135 - MPMX20_02604 0.64 +0.4 2,740,135 - MPMX20_02604 0.64 +0.0 2,740,135 - MPMX20_02604 0.64 -0.1 2,740,135 - MPMX20_02604 0.64 -3.1 2,740,135 - MPMX20_02604 0.64 -0.1 2,740,135 - MPMX20_02604 0.64 -0.7 2,740,135 - MPMX20_02604 0.64 -0.5 2,740,135 - MPMX20_02604 0.64 -0.9 2,740,135 - MPMX20_02604 0.64 -0.1 2,740,135 - MPMX20_02604 0.64 -0.4 2,740,135 - MPMX20_02604 0.64 -0.8 2,740,135 - MPMX20_02604 0.64 -0.8 2,740,135 - MPMX20_02604 0.64 -2.4 2,740,135 - MPMX20_02604 0.64 +2.1 2,740,135 - MPMX20_02604 0.64 +0.9 2,740,135 - MPMX20_02604 0.64 -1.6 2,740,135 - MPMX20_02604 0.64 -1.5 2,740,135 - MPMX20_02604 0.64 -1.0 2,740,135 - MPMX20_02604 0.64 +0.5 2,740,135 - MPMX20_02604 0.64 -3.1 2,740,135 - MPMX20_02604 0.64 -0.3 2,740,135 - MPMX20_02604 0.64 -1.1 2,740,135 - MPMX20_02604 0.64 -1.5 2,740,135 - MPMX20_02604 0.64 -1.4 2,740,135 - MPMX20_02604 0.64 +1.3 2,740,135 - MPMX20_02604 0.64 -0.3 2,740,135 - MPMX20_02604 0.64 -1.1 2,740,135 - MPMX20_02604 0.64 -1.4 2,740,135 - MPMX20_02604 0.64 -1.5 2,740,225 - MPMX20_02604 0.73 -0.7 2,740,254 + MPMX20_02604 0.76 -2.5 2,740,263 + MPMX20_02604 0.77 -0.1 2,740,264 + MPMX20_02604 0.77 -0.6 2,740,271 - MPMX20_02604 0.78 -0.4 2,740,279 - MPMX20_02604 0.79 -1.2 2,740,305 + MPMX20_02604 0.81 -1.0 2,740,305 + MPMX20_02604 0.81 -0.1 2,740,331 + MPMX20_02604 0.84 +1.1 2,740,331 + MPMX20_02604 0.84 -0.9 2,740,339 - MPMX20_02604 0.85 -1.5 2,740,339 - MPMX20_02604 0.85 +0.0 2,740,508 + +0.8 2,740,509 - -0.3 2,740,585 - -0.3 2,740,616 + MPMX20_02605 0.12 +0.7 2,740,624 - MPMX20_02605 0.13 -0.7 2,740,731 - MPMX20_02605 0.22 -0.8 2,740,742 + MPMX20_02605 0.23 -0.2 2,740,750 - MPMX20_02605 0.24 +0.8 2,740,760 - MPMX20_02605 0.25 +2.9 2,740,782 + MPMX20_02605 0.27 +0.1 2,740,785 - MPMX20_02605 0.27 -0.4 2,740,790 - MPMX20_02605 0.28 -0.0 2,740,797 - MPMX20_02605 0.28 +0.2 2,740,797 - MPMX20_02605 0.28 -0.1 2,740,801 + MPMX20_02605 0.29 -2.0 2,740,809 - MPMX20_02605 0.29 +0.8 2,740,848 + MPMX20_02605 0.33 -0.4 2,740,864 + MPMX20_02605 0.34 +0.3 2,740,864 + MPMX20_02605 0.34 +0.3 2,740,864 + MPMX20_02605 0.34 +2.7 2,740,872 - MPMX20_02605 0.35 +0.7 2,740,914 + MPMX20_02605 0.39 -0.4 2,740,939 - MPMX20_02605 0.41 -0.8 2,740,939 - MPMX20_02605 0.41 +1.2 2,740,939 - MPMX20_02605 0.41 -1.1 2,740,949 + MPMX20_02605 0.42 -0.3 2,740,958 - MPMX20_02605 0.43 +0.6 2,740,988 - MPMX20_02605 0.46 -0.6 2,741,036 - MPMX20_02605 0.50 +0.9 2,741,058 - MPMX20_02605 0.52 +1.1 2,741,066 + MPMX20_02605 0.53 -0.2 2,741,074 - MPMX20_02605 0.53 +1.3 2,741,094 - MPMX20_02605 0.55 +0.6 2,741,312 - MPMX20_02605 0.75 +0.2 2,741,325 - MPMX20_02605 0.76 -0.2 2,741,337 + MPMX20_02605 0.77 +1.0 2,741,345 - MPMX20_02605 0.78 +0.2 2,741,430 - MPMX20_02605 0.85 -0.1 2,741,451 + MPMX20_02605 0.87 -1.2 2,741,459 - MPMX20_02605 0.88 -1.6 2,741,459 - MPMX20_02605 0.88 -1.4 2,741,461 + MPMX20_02605 0.88 +0.3 2,741,461 + MPMX20_02605 0.88 +0.1 2,741,461 + MPMX20_02605 0.88 -0.8 2,741,483 - +0.5
Or see this region's nucleotide sequence