Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15670 and A4249_RS15675 overlap by 4 nucleotides A4249_RS15675 and A4249_RS15680 are separated by 137 nucleotides A4249_RS15680 and A4249_RS15685 are separated by 129 nucleotides
A4249_RS15670: A4249_RS15670 - sensor histidine kinase, at 3,170,423 to 3,171,880
_RS15670
A4249_RS15675: A4249_RS15675 - Crp/Fnr family transcriptional regulator, at 3,171,877 to 3,172,563
_RS15675
A4249_RS15680: A4249_RS15680 - hypothetical protein, at 3,172,701 to 3,172,883
_RS15680
A4249_RS15685: A4249_RS15685 - DUF1206 domain-containing protein, at 3,173,013 to 3,173,870
_RS15685
Position (kb)
3171
3172
3173 Strain fitness (log2 ratio)
-1
0
1
2 at 3171.969 kb on - strand, within A4249_RS15675 at 3171.969 kb on - strand, within A4249_RS15675 at 3172.049 kb on + strand, within A4249_RS15675 at 3172.049 kb on + strand, within A4249_RS15675 at 3172.049 kb on + strand, within A4249_RS15675 at 3172.050 kb on - strand, within A4249_RS15675 at 3172.050 kb on - strand, within A4249_RS15675 at 3172.050 kb on - strand, within A4249_RS15675 at 3172.110 kb on + strand, within A4249_RS15675 at 3172.110 kb on + strand, within A4249_RS15675 at 3172.110 kb on + strand, within A4249_RS15675 at 3172.110 kb on + strand, within A4249_RS15675 at 3172.111 kb on - strand, within A4249_RS15675 at 3172.187 kb on + strand, within A4249_RS15675 at 3172.187 kb on + strand, within A4249_RS15675 at 3172.187 kb on + strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.188 kb on - strand, within A4249_RS15675 at 3172.575 kb on + strand at 3172.576 kb on - strand at 3172.576 kb on - strand at 3172.622 kb on + strand at 3172.622 kb on + strand at 3172.623 kb on - strand at 3172.623 kb on - strand at 3172.623 kb on - strand at 3172.623 kb on - strand at 3172.624 kb on + strand at 3172.624 kb on + strand at 3172.624 kb on + strand at 3172.624 kb on + strand at 3172.624 kb on + strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.625 kb on - strand at 3172.873 kb on + strand at 3172.873 kb on + strand at 3172.874 kb on - strand at 3172.874 kb on - strand at 3172.874 kb on - strand at 3172.874 kb on - strand at 3172.912 kb on - strand at 3173.103 kb on + strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.104 kb on - strand, within A4249_RS15685 at 3173.353 kb on - strand, within A4249_RS15685 at 3173.382 kb on + strand, within A4249_RS15685 at 3173.383 kb on - strand, within A4249_RS15685
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 3,171,969 - A4249_RS15675 0.13 +0.1 3,171,969 - A4249_RS15675 0.13 +0.3 3,172,049 + A4249_RS15675 0.25 +0.3 3,172,049 + A4249_RS15675 0.25 +0.6 3,172,049 + A4249_RS15675 0.25 +0.1 3,172,050 - A4249_RS15675 0.25 -0.4 3,172,050 - A4249_RS15675 0.25 +0.7 3,172,050 - A4249_RS15675 0.25 +0.5 3,172,110 + A4249_RS15675 0.34 +0.5 3,172,110 + A4249_RS15675 0.34 +0.2 3,172,110 + A4249_RS15675 0.34 +0.2 3,172,110 + A4249_RS15675 0.34 -0.1 3,172,111 - A4249_RS15675 0.34 +0.7 3,172,187 + A4249_RS15675 0.45 +0.2 3,172,187 + A4249_RS15675 0.45 +1.1 3,172,187 + A4249_RS15675 0.45 +0.2 3,172,188 - A4249_RS15675 0.45 -0.1 3,172,188 - A4249_RS15675 0.45 +0.0 3,172,188 - A4249_RS15675 0.45 +0.4 3,172,188 - A4249_RS15675 0.45 +0.4 3,172,188 - A4249_RS15675 0.45 +0.6 3,172,188 - A4249_RS15675 0.45 +2.0 3,172,188 - A4249_RS15675 0.45 +0.7 3,172,188 - A4249_RS15675 0.45 +0.2 3,172,575 + +0.3 3,172,576 - -0.0 3,172,576 - -0.5 3,172,622 + -0.5 3,172,622 + -0.8 3,172,623 - +2.4 3,172,623 - +0.4 3,172,623 - +0.2 3,172,623 - +0.1 3,172,624 + +0.2 3,172,624 + +0.2 3,172,624 + +0.7 3,172,624 + +1.3 3,172,624 + +1.0 3,172,625 - -0.3 3,172,625 - -0.5 3,172,625 - +0.4 3,172,625 - +1.9 3,172,625 - -1.2 3,172,625 - +1.4 3,172,625 - -0.8 3,172,873 + +1.4 3,172,873 + -0.8 3,172,874 - +0.4 3,172,874 - -1.0 3,172,874 - +0.3 3,172,874 - -0.7 3,172,912 - -1.0 3,173,103 + A4249_RS15685 0.10 -0.1 3,173,104 - A4249_RS15685 0.11 +0.5 3,173,104 - A4249_RS15685 0.11 -0.7 3,173,104 - A4249_RS15685 0.11 -0.5 3,173,104 - A4249_RS15685 0.11 -0.5 3,173,104 - A4249_RS15685 0.11 -0.9 3,173,104 - A4249_RS15685 0.11 +0.0 3,173,353 - A4249_RS15685 0.40 +0.7 3,173,382 + A4249_RS15685 0.43 +0.6 3,173,383 - A4249_RS15685 0.43 -0.6
Or see this region's nucleotide sequence