Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15675

Experiment: Tween 20 (C), 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS15670 and A4249_RS15675 overlap by 4 nucleotidesA4249_RS15675 and A4249_RS15680 are separated by 137 nucleotidesA4249_RS15680 and A4249_RS15685 are separated by 129 nucleotides A4249_RS15670: A4249_RS15670 - sensor histidine kinase, at 3,170,423 to 3,171,880 _RS15670 A4249_RS15675: A4249_RS15675 - Crp/Fnr family transcriptional regulator, at 3,171,877 to 3,172,563 _RS15675 A4249_RS15680: A4249_RS15680 - hypothetical protein, at 3,172,701 to 3,172,883 _RS15680 A4249_RS15685: A4249_RS15685 - DUF1206 domain-containing protein, at 3,173,013 to 3,173,870 _RS15685 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -1 0 1 2at 3171.969 kb on - strand, within A4249_RS15675at 3171.969 kb on - strand, within A4249_RS15675at 3172.049 kb on + strand, within A4249_RS15675at 3172.049 kb on + strand, within A4249_RS15675at 3172.049 kb on + strand, within A4249_RS15675at 3172.050 kb on - strand, within A4249_RS15675at 3172.050 kb on - strand, within A4249_RS15675at 3172.050 kb on - strand, within A4249_RS15675at 3172.110 kb on + strand, within A4249_RS15675at 3172.110 kb on + strand, within A4249_RS15675at 3172.110 kb on + strand, within A4249_RS15675at 3172.110 kb on + strand, within A4249_RS15675at 3172.111 kb on - strand, within A4249_RS15675at 3172.187 kb on + strand, within A4249_RS15675at 3172.187 kb on + strand, within A4249_RS15675at 3172.187 kb on + strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.188 kb on - strand, within A4249_RS15675at 3172.575 kb on + strandat 3172.576 kb on - strandat 3172.576 kb on - strandat 3172.622 kb on + strandat 3172.622 kb on + strandat 3172.623 kb on - strandat 3172.623 kb on - strandat 3172.623 kb on - strandat 3172.623 kb on - strandat 3172.624 kb on + strandat 3172.624 kb on + strandat 3172.624 kb on + strandat 3172.624 kb on + strandat 3172.624 kb on + strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.625 kb on - strandat 3172.873 kb on + strandat 3172.873 kb on + strandat 3172.874 kb on - strandat 3172.874 kb on - strandat 3172.874 kb on - strandat 3172.874 kb on - strandat 3172.912 kb on - strandat 3173.103 kb on + strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.104 kb on - strand, within A4249_RS15685at 3173.353 kb on - strand, within A4249_RS15685at 3173.382 kb on + strand, within A4249_RS15685at 3173.383 kb on - strand, within A4249_RS15685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
remove
3,171,969 - A4249_RS15675 0.13 +0.1
3,171,969 - A4249_RS15675 0.13 +0.3
3,172,049 + A4249_RS15675 0.25 +0.3
3,172,049 + A4249_RS15675 0.25 +0.6
3,172,049 + A4249_RS15675 0.25 +0.1
3,172,050 - A4249_RS15675 0.25 -0.4
3,172,050 - A4249_RS15675 0.25 +0.7
3,172,050 - A4249_RS15675 0.25 +0.5
3,172,110 + A4249_RS15675 0.34 +0.5
3,172,110 + A4249_RS15675 0.34 +0.2
3,172,110 + A4249_RS15675 0.34 +0.2
3,172,110 + A4249_RS15675 0.34 -0.1
3,172,111 - A4249_RS15675 0.34 +0.7
3,172,187 + A4249_RS15675 0.45 +0.2
3,172,187 + A4249_RS15675 0.45 +1.1
3,172,187 + A4249_RS15675 0.45 +0.2
3,172,188 - A4249_RS15675 0.45 -0.1
3,172,188 - A4249_RS15675 0.45 +0.0
3,172,188 - A4249_RS15675 0.45 +0.4
3,172,188 - A4249_RS15675 0.45 +0.4
3,172,188 - A4249_RS15675 0.45 +0.6
3,172,188 - A4249_RS15675 0.45 +2.0
3,172,188 - A4249_RS15675 0.45 +0.7
3,172,188 - A4249_RS15675 0.45 +0.2
3,172,575 + +0.3
3,172,576 - -0.0
3,172,576 - -0.5
3,172,622 + -0.5
3,172,622 + -0.8
3,172,623 - +2.4
3,172,623 - +0.4
3,172,623 - +0.2
3,172,623 - +0.1
3,172,624 + +0.2
3,172,624 + +0.2
3,172,624 + +0.7
3,172,624 + +1.3
3,172,624 + +1.0
3,172,625 - -0.3
3,172,625 - -0.5
3,172,625 - +0.4
3,172,625 - +1.9
3,172,625 - -1.2
3,172,625 - +1.4
3,172,625 - -0.8
3,172,873 + +1.4
3,172,873 + -0.8
3,172,874 - +0.4
3,172,874 - -1.0
3,172,874 - +0.3
3,172,874 - -0.7
3,172,912 - -1.0
3,173,103 + A4249_RS15685 0.10 -0.1
3,173,104 - A4249_RS15685 0.11 +0.5
3,173,104 - A4249_RS15685 0.11 -0.7
3,173,104 - A4249_RS15685 0.11 -0.5
3,173,104 - A4249_RS15685 0.11 -0.5
3,173,104 - A4249_RS15685 0.11 -0.9
3,173,104 - A4249_RS15685 0.11 +0.0
3,173,353 - A4249_RS15685 0.40 +0.7
3,173,382 + A4249_RS15685 0.43 +0.6
3,173,383 - A4249_RS15685 0.43 -0.6

Or see this region's nucleotide sequence