Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04640 and A4249_RS04645 overlap by 1 nucleotides A4249_RS04645 and A4249_RS04650 overlap by 4 nucleotides A4249_RS04650 and A4249_RS16245 are separated by 31 nucleotides A4249_RS16245 and A4249_RS04655 are separated by 103 nucleotides
A4249_RS04640: A4249_RS04640 - serine--tRNA ligase, at 964,011 to 965,426
_RS04640
A4249_RS04645: A4249_RS04645 - 5'/3'-nucleotidase SurE, at 965,426 to 966,220
_RS04645
A4249_RS04650: A4249_RS04650 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 966,217 to 966,861
_RS04650
A4249_RS16245: A4249_RS16245 - OmpA family protein, at 966,893 to 967,597
_RS16245
A4249_RS04655: A4249_RS04655 - peptidoglycan DD-metalloendopeptidase family protein, at 967,701 to 968,780
_RS04655
Position (kb) 966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.431 kb on + strand at 965.431 kb on + strand at 965.431 kb on + strand at 965.432 kb on - strand at 965.587 kb on - strand, within A4249_RS04645 at 965.587 kb on - strand, within A4249_RS04645 at 965.713 kb on + strand, within A4249_RS04645 at 965.732 kb on + strand, within A4249_RS04645 at 965.732 kb on + strand, within A4249_RS04645 at 965.732 kb on + strand, within A4249_RS04645 at 966.035 kb on + strand, within A4249_RS04645 at 966.035 kb on + strand, within A4249_RS04645 at 966.035 kb on + strand, within A4249_RS04645 at 966.035 kb on + strand, within A4249_RS04645 at 966.036 kb on - strand, within A4249_RS04645 at 966.038 kb on + strand, within A4249_RS04645 at 966.038 kb on + strand, within A4249_RS04645 at 966.038 kb on + strand, within A4249_RS04645 at 966.039 kb on - strand, within A4249_RS04645 at 966.039 kb on - strand, within A4249_RS04645 at 966.133 kb on + strand, within A4249_RS04645 at 966.133 kb on + strand, within A4249_RS04645 at 966.133 kb on + strand, within A4249_RS04645 at 966.966 kb on + strand, within A4249_RS16245 at 966.966 kb on + strand, within A4249_RS16245 at 966.967 kb on - strand, within A4249_RS16245 at 966.990 kb on + strand, within A4249_RS16245 at 966.990 kb on + strand, within A4249_RS16245 at 967.004 kb on + strand, within A4249_RS16245 at 967.005 kb on - strand, within A4249_RS16245 at 967.088 kb on + strand, within A4249_RS16245 at 967.088 kb on + strand, within A4249_RS16245 at 967.088 kb on + strand, within A4249_RS16245 at 967.088 kb on + strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.089 kb on - strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.090 kb on + strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.091 kb on - strand, within A4249_RS16245 at 967.102 kb on + strand, within A4249_RS16245 at 967.135 kb on + strand, within A4249_RS16245 at 967.135 kb on + strand, within A4249_RS16245 at 967.170 kb on + strand, within A4249_RS16245 at 967.170 kb on + strand, within A4249_RS16245 at 967.170 kb on + strand, within A4249_RS16245 at 967.170 kb on + strand, within A4249_RS16245 at 967.171 kb on - strand, within A4249_RS16245 at 967.176 kb on + strand, within A4249_RS16245 at 967.176 kb on + strand, within A4249_RS16245 at 967.176 kb on + strand, within A4249_RS16245 at 967.176 kb on + strand, within A4249_RS16245 at 967.177 kb on - strand, within A4249_RS16245 at 967.177 kb on - strand, within A4249_RS16245 at 967.177 kb on - strand, within A4249_RS16245 at 967.177 kb on - strand, within A4249_RS16245 at 967.187 kb on + strand, within A4249_RS16245 at 967.187 kb on + strand, within A4249_RS16245 at 967.188 kb on - strand, within A4249_RS16245 at 967.188 kb on - strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.265 kb on + strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.266 kb on - strand, within A4249_RS16245 at 967.335 kb on - strand, within A4249_RS16245 at 967.346 kb on + strand, within A4249_RS16245 at 967.346 kb on + strand, within A4249_RS16245 at 967.346 kb on + strand, within A4249_RS16245 at 967.346 kb on + strand, within A4249_RS16245 at 967.346 kb on + strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.347 kb on - strand, within A4249_RS16245 at 967.379 kb on + strand, within A4249_RS16245 at 967.380 kb on - strand, within A4249_RS16245 at 967.380 kb on - strand, within A4249_RS16245 at 967.387 kb on + strand, within A4249_RS16245 at 967.387 kb on + strand, within A4249_RS16245 at 967.549 kb on + strand at 967.549 kb on + strand at 967.549 kb on + strand at 967.549 kb on + strand at 967.550 kb on - strand at 967.550 kb on - strand at 967.550 kb on - strand at 967.637 kb on + strand at 967.637 kb on + strand at 967.637 kb on + strand at 967.638 kb on - strand at 967.638 kb on - strand at 967.770 kb on + strand at 967.770 kb on + strand at 967.771 kb on - strand at 967.771 kb on - strand at 967.771 kb on - strand at 967.818 kb on + strand, within A4249_RS04655 at 967.818 kb on + strand, within A4249_RS04655 at 967.818 kb on + strand, within A4249_RS04655 at 967.818 kb on + strand, within A4249_RS04655 at 967.857 kb on + strand, within A4249_RS04655
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 965,431 + +0.2 965,431 + +0.2 965,431 + +1.2 965,432 - -0.8 965,587 - A4249_RS04645 0.20 +1.2 965,587 - A4249_RS04645 0.20 -0.8 965,713 + A4249_RS04645 0.36 +0.2 965,732 + A4249_RS04645 0.38 -0.9 965,732 + A4249_RS04645 0.38 -0.4 965,732 + A4249_RS04645 0.38 -1.2 966,035 + A4249_RS04645 0.77 -0.3 966,035 + A4249_RS04645 0.77 -0.9 966,035 + A4249_RS04645 0.77 -0.2 966,035 + A4249_RS04645 0.77 +0.7 966,036 - A4249_RS04645 0.77 -1.7 966,038 + A4249_RS04645 0.77 -1.5 966,038 + A4249_RS04645 0.77 +0.6 966,038 + A4249_RS04645 0.77 -0.4 966,039 - A4249_RS04645 0.77 -2.6 966,039 - A4249_RS04645 0.77 +1.7 966,133 + A4249_RS04645 0.89 -0.8 966,133 + A4249_RS04645 0.89 +0.5 966,133 + A4249_RS04645 0.89 +0.4 966,966 + A4249_RS16245 0.10 -0.9 966,966 + A4249_RS16245 0.10 +0.2 966,967 - A4249_RS16245 0.10 -0.8 966,990 + A4249_RS16245 0.14 -0.3 966,990 + A4249_RS16245 0.14 +1.0 967,004 + A4249_RS16245 0.16 -0.8 967,005 - A4249_RS16245 0.16 +1.4 967,088 + A4249_RS16245 0.28 +0.1 967,088 + A4249_RS16245 0.28 -1.8 967,088 + A4249_RS16245 0.28 +1.2 967,088 + A4249_RS16245 0.28 +0.2 967,089 - A4249_RS16245 0.28 -0.8 967,089 - A4249_RS16245 0.28 -0.8 967,089 - A4249_RS16245 0.28 +0.4 967,089 - A4249_RS16245 0.28 -0.2 967,089 - A4249_RS16245 0.28 -0.3 967,089 - A4249_RS16245 0.28 -0.8 967,090 + A4249_RS16245 0.28 -0.6 967,090 + A4249_RS16245 0.28 -0.0 967,090 + A4249_RS16245 0.28 +0.4 967,090 + A4249_RS16245 0.28 +1.7 967,090 + A4249_RS16245 0.28 -2.5 967,090 + A4249_RS16245 0.28 +0.2 967,090 + A4249_RS16245 0.28 -1.2 967,091 - A4249_RS16245 0.28 +0.2 967,091 - A4249_RS16245 0.28 -0.1 967,091 - A4249_RS16245 0.28 +0.2 967,091 - A4249_RS16245 0.28 -0.4 967,091 - A4249_RS16245 0.28 +0.3 967,091 - A4249_RS16245 0.28 -0.3 967,102 + A4249_RS16245 0.30 -0.8 967,135 + A4249_RS16245 0.34 +0.3 967,135 + A4249_RS16245 0.34 -0.1 967,170 + A4249_RS16245 0.39 -0.8 967,170 + A4249_RS16245 0.39 +1.0 967,170 + A4249_RS16245 0.39 +0.5 967,170 + A4249_RS16245 0.39 +1.2 967,171 - A4249_RS16245 0.39 -3.6 967,176 + A4249_RS16245 0.40 +0.2 967,176 + A4249_RS16245 0.40 +0.3 967,176 + A4249_RS16245 0.40 +2.2 967,176 + A4249_RS16245 0.40 -0.2 967,177 - A4249_RS16245 0.40 -1.0 967,177 - A4249_RS16245 0.40 -0.5 967,177 - A4249_RS16245 0.40 +0.2 967,177 - A4249_RS16245 0.40 -1.7 967,187 + A4249_RS16245 0.42 -0.4 967,187 + A4249_RS16245 0.42 -1.0 967,188 - A4249_RS16245 0.42 +0.2 967,188 - A4249_RS16245 0.42 -3.2 967,265 + A4249_RS16245 0.53 -0.8 967,265 + A4249_RS16245 0.53 +1.2 967,265 + A4249_RS16245 0.53 +1.2 967,265 + A4249_RS16245 0.53 +1.9 967,265 + A4249_RS16245 0.53 +0.7 967,265 + A4249_RS16245 0.53 +0.2 967,265 + A4249_RS16245 0.53 -0.3 967,266 - A4249_RS16245 0.53 +1.0 967,266 - A4249_RS16245 0.53 -0.7 967,266 - A4249_RS16245 0.53 +0.2 967,266 - A4249_RS16245 0.53 +0.2 967,266 - A4249_RS16245 0.53 -0.3 967,266 - A4249_RS16245 0.53 -0.1 967,266 - A4249_RS16245 0.53 +2.1 967,335 - A4249_RS16245 0.63 -0.7 967,346 + A4249_RS16245 0.64 +1.3 967,346 + A4249_RS16245 0.64 +0.3 967,346 + A4249_RS16245 0.64 +0.6 967,346 + A4249_RS16245 0.64 -2.4 967,346 + A4249_RS16245 0.64 +2.7 967,347 - A4249_RS16245 0.64 +0.3 967,347 - A4249_RS16245 0.64 -0.2 967,347 - A4249_RS16245 0.64 +0.5 967,347 - A4249_RS16245 0.64 -1.8 967,347 - A4249_RS16245 0.64 +0.8 967,347 - A4249_RS16245 0.64 -0.7 967,347 - A4249_RS16245 0.64 -0.1 967,379 + A4249_RS16245 0.69 +0.7 967,380 - A4249_RS16245 0.69 +0.2 967,380 - A4249_RS16245 0.69 +0.2 967,387 + A4249_RS16245 0.70 +0.2 967,387 + A4249_RS16245 0.70 -1.3 967,549 + +0.2 967,549 + +0.1 967,549 + -0.5 967,549 + +0.9 967,550 - +0.3 967,550 - -0.1 967,550 - +0.4 967,637 + +0.2 967,637 + -0.6 967,637 + -1.0 967,638 - -1.0 967,638 - +0.7 967,770 + -3.4 967,770 + -0.7 967,771 - -0.3 967,771 - -0.8 967,771 - -0.6 967,818 + A4249_RS04655 0.11 -0.6 967,818 + A4249_RS04655 0.11 -0.8 967,818 + A4249_RS04655 0.11 -0.4 967,818 + A4249_RS04655 0.11 -2.2 967,857 + A4249_RS04655 0.14 -1.3
Or see this region's nucleotide sequence