Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01215

Experiment: Tween 20 (C), 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01205 and A4249_RS01210 are separated by 113 nucleotidesA4249_RS01210 and A4249_RS01215 overlap by 4 nucleotidesA4249_RS01215 and A4249_RS01220 are separated by 56 nucleotidesA4249_RS01220 and A4249_RS17020 are separated by 26 nucleotidesA4249_RS17020 and A4249_RS01225 are separated by 26 nucleotides A4249_RS01205: A4249_RS01205 - hypothetical protein, at 228,345 to 228,812 _RS01205 A4249_RS01210: A4249_RS01210 - hypothetical protein, at 228,926 to 229,441 _RS01210 A4249_RS01215: A4249_RS01215 - hypothetical protein, at 229,438 to 229,779 _RS01215 A4249_RS01220: A4249_RS01220 - hypothetical protein, at 229,836 to 230,165 _RS01220 A4249_RS17020: A4249_RS17020 - hypothetical protein, at 230,192 to 230,326 _RS17020 A4249_RS01225: A4249_RS01225 - hypothetical protein, at 230,353 to 235,407 _RS01225 Position (kb) 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 228.438 kb on + strand, within A4249_RS01205at 228.438 kb on + strand, within A4249_RS01205at 228.439 kb on - strand, within A4249_RS01205at 228.439 kb on - strand, within A4249_RS01205at 228.523 kb on - strand, within A4249_RS01205at 228.530 kb on + strand, within A4249_RS01205at 228.530 kb on + strand, within A4249_RS01205at 228.530 kb on + strand, within A4249_RS01205at 228.530 kb on + strand, within A4249_RS01205at 228.531 kb on - strand, within A4249_RS01205at 228.531 kb on - strand, within A4249_RS01205at 228.531 kb on - strand, within A4249_RS01205at 228.534 kb on + strand, within A4249_RS01205at 228.534 kb on + strand, within A4249_RS01205at 228.534 kb on + strand, within A4249_RS01205at 228.534 kb on + strand, within A4249_RS01205at 228.535 kb on - strand, within A4249_RS01205at 228.535 kb on - strand, within A4249_RS01205at 228.560 kb on + strand, within A4249_RS01205at 228.560 kb on + strand, within A4249_RS01205at 228.560 kb on + strand, within A4249_RS01205at 228.561 kb on - strand, within A4249_RS01205at 228.561 kb on - strand, within A4249_RS01205at 228.561 kb on - strand, within A4249_RS01205at 228.603 kb on + strand, within A4249_RS01205at 228.603 kb on + strand, within A4249_RS01205at 228.611 kb on + strand, within A4249_RS01205at 228.612 kb on - strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.686 kb on + strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.687 kb on - strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.694 kb on + strand, within A4249_RS01205at 228.695 kb on - strand, within A4249_RS01205at 228.695 kb on - strand, within A4249_RS01205at 228.695 kb on - strand, within A4249_RS01205at 228.695 kb on - strand, within A4249_RS01205at 228.695 kb on - strand, within A4249_RS01205at 228.712 kb on + strand, within A4249_RS01205at 228.713 kb on - strand, within A4249_RS01205at 228.713 kb on - strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.753 kb on + strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.754 kb on - strand, within A4249_RS01205at 228.800 kb on + strandat 228.800 kb on + strandat 228.801 kb on - strandat 228.801 kb on - strandat 228.801 kb on - strandat 228.801 kb on - strandat 228.801 kb on - strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.815 kb on + strandat 228.816 kb on - strandat 228.816 kb on - strandat 228.816 kb on - strandat 228.816 kb on - strandat 228.816 kb on - strandat 228.845 kb on - strandat 228.845 kb on - strandat 228.845 kb on - strandat 228.871 kb on + strandat 228.871 kb on + strandat 228.871 kb on + strandat 228.872 kb on - strandat 228.872 kb on - strandat 228.872 kb on - strandat 228.872 kb on - strandat 228.872 kb on - strandat 228.872 kb on - strandat 228.977 kb on + strandat 228.977 kb on + strandat 228.977 kb on + strandat 228.977 kb on + strandat 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.228 kb on + strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.229 kb on - strand, within A4249_RS01210at 229.301 kb on + strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.302 kb on - strand, within A4249_RS01210at 229.347 kb on + strand, within A4249_RS01210at 229.347 kb on + strand, within A4249_RS01210at 229.347 kb on + strand, within A4249_RS01210at 229.348 kb on - strand, within A4249_RS01210at 229.348 kb on - strand, within A4249_RS01210at 229.348 kb on - strand, within A4249_RS01210at 229.348 kb on - strand, within A4249_RS01210at 229.348 kb on - strand, within A4249_RS01210at 229.362 kb on - strand, within A4249_RS01210at 229.486 kb on - strand, within A4249_RS01215at 229.486 kb on - strand, within A4249_RS01215at 229.697 kb on + strand, within A4249_RS01215at 229.697 kb on + strand, within A4249_RS01215at 229.697 kb on + strand, within A4249_RS01215at 229.827 kb on + strandat 229.827 kb on + strandat 230.095 kb on + strand, within A4249_RS01220at 230.095 kb on + strand, within A4249_RS01220at 230.095 kb on + strand, within A4249_RS01220at 230.095 kb on + strand, within A4249_RS01220at 230.108 kb on + strand, within A4249_RS01220at 230.330 kb on + strandat 230.432 kb on + strandat 230.432 kb on + strandat 230.600 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.723 kb on + strandat 230.724 kb on - strandat 230.729 kb on + strandat 230.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 30C
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228,438 + A4249_RS01205 0.20 +0.6
228,438 + A4249_RS01205 0.20 -0.7
228,439 - A4249_RS01205 0.20 +0.3
228,439 - A4249_RS01205 0.20 -0.3
228,523 - A4249_RS01205 0.38 -0.2
228,530 + A4249_RS01205 0.40 +1.3
228,530 + A4249_RS01205 0.40 +1.3
228,530 + A4249_RS01205 0.40 +0.5
228,530 + A4249_RS01205 0.40 +0.2
228,531 - A4249_RS01205 0.40 -0.7
228,531 - A4249_RS01205 0.40 +0.0
228,531 - A4249_RS01205 0.40 -0.6
228,534 + A4249_RS01205 0.40 -0.3
228,534 + A4249_RS01205 0.40 +3.9
228,534 + A4249_RS01205 0.40 -0.3
228,534 + A4249_RS01205 0.40 -2.3
228,535 - A4249_RS01205 0.41 +0.0
228,535 - A4249_RS01205 0.41 +0.3
228,560 + A4249_RS01205 0.46 -1.3
228,560 + A4249_RS01205 0.46 -0.5
228,560 + A4249_RS01205 0.46 -0.7
228,561 - A4249_RS01205 0.46 +0.3
228,561 - A4249_RS01205 0.46 -0.3
228,561 - A4249_RS01205 0.46 +0.3
228,603 + A4249_RS01205 0.55 -0.1
228,603 + A4249_RS01205 0.55 -0.3
228,611 + A4249_RS01205 0.57 +1.2
228,612 - A4249_RS01205 0.57 -0.4
228,686 + A4249_RS01205 0.73 -0.3
228,686 + A4249_RS01205 0.73 -0.4
228,686 + A4249_RS01205 0.73 -0.2
228,686 + A4249_RS01205 0.73 -1.1
228,686 + A4249_RS01205 0.73 -1.7
228,686 + A4249_RS01205 0.73 -0.1
228,687 - A4249_RS01205 0.73 +2.7
228,687 - A4249_RS01205 0.73 +0.7
228,687 - A4249_RS01205 0.73 +1.7
228,687 - A4249_RS01205 0.73 +1.5
228,687 - A4249_RS01205 0.73 +1.7
228,687 - A4249_RS01205 0.73 -0.3
228,687 - A4249_RS01205 0.73 +0.9
228,694 + A4249_RS01205 0.75 -0.4
228,694 + A4249_RS01205 0.75 +1.3
228,694 + A4249_RS01205 0.75 -1.0
228,694 + A4249_RS01205 0.75 -0.8
228,694 + A4249_RS01205 0.75 +0.6
228,694 + A4249_RS01205 0.75 +0.5
228,694 + A4249_RS01205 0.75 +0.6
228,694 + A4249_RS01205 0.75 -0.2
228,695 - A4249_RS01205 0.75 +0.3
228,695 - A4249_RS01205 0.75 -0.4
228,695 - A4249_RS01205 0.75 +0.3
228,695 - A4249_RS01205 0.75 -1.0
228,695 - A4249_RS01205 0.75 -1.9
228,712 + A4249_RS01205 0.78 -0.3
228,713 - A4249_RS01205 0.79 +1.3
228,713 - A4249_RS01205 0.79 -2.0
228,753 + A4249_RS01205 0.87 +0.0
228,753 + A4249_RS01205 0.87 -0.1
228,753 + A4249_RS01205 0.87 +0.6
228,753 + A4249_RS01205 0.87 +0.4
228,753 + A4249_RS01205 0.87 +1.9
228,753 + A4249_RS01205 0.87 -0.8
228,753 + A4249_RS01205 0.87 -0.8
228,753 + A4249_RS01205 0.87 +1.7
228,753 + A4249_RS01205 0.87 -1.5
228,753 + A4249_RS01205 0.87 +0.9
228,753 + A4249_RS01205 0.87 +0.7
228,753 + A4249_RS01205 0.87 +0.0
228,753 + A4249_RS01205 0.87 +1.1
228,754 - A4249_RS01205 0.87 +0.3
228,754 - A4249_RS01205 0.87 -2.1
228,754 - A4249_RS01205 0.87 +0.3
228,754 - A4249_RS01205 0.87 -0.7
228,754 - A4249_RS01205 0.87 +0.1
228,754 - A4249_RS01205 0.87 +0.6
228,754 - A4249_RS01205 0.87 +1.6
228,754 - A4249_RS01205 0.87 +1.3
228,754 - A4249_RS01205 0.87 +0.9
228,754 - A4249_RS01205 0.87 -0.2
228,754 - A4249_RS01205 0.87 -3.5
228,754 - A4249_RS01205 0.87 +0.3
228,800 + +0.4
228,800 + -0.7
228,801 - +0.7
228,801 - -0.2
228,801 - +0.0
228,801 - +1.1
228,801 - +0.3
228,815 + -0.7
228,815 + -0.2
228,815 + +0.6
228,815 + +1.6
228,815 + +0.0
228,815 + -1.3
228,815 + -2.5
228,815 + +0.3
228,815 + -0.6
228,816 - +0.9
228,816 - -0.7
228,816 - +0.9
228,816 - +0.9
228,816 - -0.3
228,845 - +2.6
228,845 - -0.2
228,845 - +0.7
228,871 + +0.3
228,871 + -0.7
228,871 + +0.7
228,872 - +0.3
228,872 - +0.1
228,872 - -0.3
228,872 - +0.3
228,872 - -0.0
228,872 - +0.3
228,977 + +1.9
228,977 + -0.1
228,977 + +1.7
228,977 + +0.7
229,228 + A4249_RS01210 0.59 -2.5
229,228 + A4249_RS01210 0.59 +0.2
229,228 + A4249_RS01210 0.59 +0.6
229,228 + A4249_RS01210 0.59 +0.3
229,228 + A4249_RS01210 0.59 +0.8
229,228 + A4249_RS01210 0.59 -0.4
229,228 + A4249_RS01210 0.59 -0.4
229,228 + A4249_RS01210 0.59 -1.7
229,228 + A4249_RS01210 0.59 -1.1
229,228 + A4249_RS01210 0.59 +0.9
229,228 + A4249_RS01210 0.59 +0.1
229,228 + A4249_RS01210 0.59 +0.3
229,229 - A4249_RS01210 0.59 -0.8
229,229 - A4249_RS01210 0.59 -2.8
229,229 - A4249_RS01210 0.59 +2.3
229,229 - A4249_RS01210 0.59 -0.8
229,229 - A4249_RS01210 0.59 +0.3
229,229 - A4249_RS01210 0.59 +0.7
229,229 - A4249_RS01210 0.59 -1.8
229,229 - A4249_RS01210 0.59 +0.3
229,229 - A4249_RS01210 0.59 -1.1
229,301 + A4249_RS01210 0.73 -0.7
229,302 - A4249_RS01210 0.73 -0.9
229,302 - A4249_RS01210 0.73 -0.3
229,302 - A4249_RS01210 0.73 -1.3
229,302 - A4249_RS01210 0.73 -2.3
229,302 - A4249_RS01210 0.73 -1.0
229,302 - A4249_RS01210 0.73 +0.5
229,347 + A4249_RS01210 0.82 +3.1
229,347 + A4249_RS01210 0.82 +1.3
229,347 + A4249_RS01210 0.82 +1.2
229,348 - A4249_RS01210 0.82 -0.2
229,348 - A4249_RS01210 0.82 +0.3
229,348 - A4249_RS01210 0.82 +0.3
229,348 - A4249_RS01210 0.82 -1.5
229,348 - A4249_RS01210 0.82 +0.9
229,362 - A4249_RS01210 0.84 -0.2
229,486 - A4249_RS01215 0.14 +1.9
229,486 - A4249_RS01215 0.14 -1.9
229,697 + A4249_RS01215 0.76 +0.3
229,697 + A4249_RS01215 0.76 -0.0
229,697 + A4249_RS01215 0.76 +3.5
229,827 + +0.2
229,827 + +0.7
230,095 + A4249_RS01220 0.78 -3.1
230,095 + A4249_RS01220 0.78 +0.2
230,095 + A4249_RS01220 0.78 +0.2
230,095 + A4249_RS01220 0.78 +0.0
230,108 + A4249_RS01220 0.82 -0.5
230,330 + +0.3
230,432 + +1.2
230,432 + +0.7
230,600 + -0.1
230,723 + -1.3
230,723 + +0.5
230,723 + -1.1
230,723 + +0.6
230,723 + +0.3
230,723 + -1.3
230,723 + +0.2
230,724 - +1.3
230,729 + +0.3
230,729 + -2.0

Or see this region's nucleotide sequence