Experiment: Tween 20 (C), 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00135 and A4249_RS00140 overlap by 4 nucleotides A4249_RS00140 and A4249_RS00145 overlap by 4 nucleotides A4249_RS00145 and A4249_RS00150 are separated by 50 nucleotides
A4249_RS00135: A4249_RS00135 - cytochrome c oxidase subunit 3, at 22,900 to 23,808
_RS00135
A4249_RS00140: A4249_RS00140 - DUF983 domain-containing protein, at 23,805 to 24,206
_RS00140
A4249_RS00145: A4249_RS00145 - SURF1 family protein, at 24,203 to 24,916
_RS00145
A4249_RS00150: A4249_RS00150 - pitrilysin family protein, at 24,967 to 26,181
_RS00150
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 23.360 kb on + strand, within A4249_RS00135 at 23.533 kb on + strand, within A4249_RS00135 at 23.533 kb on + strand, within A4249_RS00135 at 23.534 kb on - strand, within A4249_RS00135 at 23.534 kb on - strand, within A4249_RS00135 at 23.534 kb on - strand, within A4249_RS00135 at 23.534 kb on - strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.539 kb on + strand, within A4249_RS00135 at 23.540 kb on - strand, within A4249_RS00135 at 23.540 kb on - strand, within A4249_RS00135 at 23.540 kb on - strand, within A4249_RS00135 at 23.599 kb on + strand, within A4249_RS00135 at 23.600 kb on - strand, within A4249_RS00135 at 23.743 kb on + strand at 23.743 kb on + strand at 23.743 kb on + strand at 23.744 kb on - strand at 23.744 kb on - strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.791 kb on + strand at 23.792 kb on - strand at 23.792 kb on - strand at 23.988 kb on + strand, within A4249_RS00140 at 23.988 kb on + strand, within A4249_RS00140 at 23.989 kb on - strand, within A4249_RS00140 at 23.989 kb on - strand, within A4249_RS00140 at 23.989 kb on - strand, within A4249_RS00140 at 23.989 kb on - strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.084 kb on + strand, within A4249_RS00140 at 24.085 kb on - strand, within A4249_RS00140 at 24.085 kb on - strand, within A4249_RS00140 at 24.085 kb on - strand, within A4249_RS00140 at 24.085 kb on - strand, within A4249_RS00140 at 24.674 kb on + strand, within A4249_RS00145 at 24.674 kb on + strand, within A4249_RS00145 at 24.674 kb on + strand, within A4249_RS00145 at 24.675 kb on - strand, within A4249_RS00145 at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on - strand at 24.873 kb on - strand at 24.873 kb on - strand at 24.873 kb on - strand at 24.921 kb on + strand at 25.451 kb on - strand, within A4249_RS00150 at 25.451 kb on - strand, within A4249_RS00150 at 25.451 kb on - strand, within A4249_RS00150 at 25.756 kb on + strand, within A4249_RS00150 at 25.756 kb on + strand, within A4249_RS00150 at 25.771 kb on + strand, within A4249_RS00150 at 25.783 kb on + strand, within A4249_RS00150 at 25.783 kb on + strand, within A4249_RS00150 at 25.783 kb on + strand, within A4249_RS00150 at 25.783 kb on + strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.784 kb on - strand, within A4249_RS00150 at 25.800 kb on - strand, within A4249_RS00150 at 25.800 kb on - strand, within A4249_RS00150 at 25.800 kb on - strand, within A4249_RS00150 at 25.810 kb on + strand, within A4249_RS00150 at 25.810 kb on + strand, within A4249_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 30C remove 23,360 + A4249_RS00135 0.51 -1.6 23,533 + A4249_RS00135 0.70 -0.8 23,533 + A4249_RS00135 0.70 +0.4 23,534 - A4249_RS00135 0.70 +0.4 23,534 - A4249_RS00135 0.70 -0.3 23,534 - A4249_RS00135 0.70 -0.9 23,534 - A4249_RS00135 0.70 -0.6 23,539 + A4249_RS00135 0.70 -1.2 23,539 + A4249_RS00135 0.70 -0.4 23,539 + A4249_RS00135 0.70 -0.6 23,539 + A4249_RS00135 0.70 -0.1 23,539 + A4249_RS00135 0.70 -0.4 23,539 + A4249_RS00135 0.70 -0.4 23,539 + A4249_RS00135 0.70 -0.1 23,540 - A4249_RS00135 0.70 -0.1 23,540 - A4249_RS00135 0.70 -0.0 23,540 - A4249_RS00135 0.70 -1.6 23,599 + A4249_RS00135 0.77 -1.1 23,600 - A4249_RS00135 0.77 -1.1 23,743 + -0.3 23,743 + +0.4 23,743 + +0.2 23,744 - -1.6 23,744 - +1.4 23,791 + +0.4 23,791 + +0.2 23,791 + +2.4 23,791 + -0.9 23,791 + +0.1 23,791 + +1.2 23,791 + -0.2 23,792 - +1.7 23,792 - -0.5 23,988 + A4249_RS00140 0.46 -0.1 23,988 + A4249_RS00140 0.46 -1.9 23,989 - A4249_RS00140 0.46 -1.2 23,989 - A4249_RS00140 0.46 -0.2 23,989 - A4249_RS00140 0.46 -0.8 23,989 - A4249_RS00140 0.46 -0.4 24,084 + A4249_RS00140 0.69 -1.2 24,084 + A4249_RS00140 0.69 +0.2 24,084 + A4249_RS00140 0.69 +0.7 24,084 + A4249_RS00140 0.69 +0.9 24,084 + A4249_RS00140 0.69 +0.3 24,084 + A4249_RS00140 0.69 -0.4 24,085 - A4249_RS00140 0.70 -0.6 24,085 - A4249_RS00140 0.70 +0.2 24,085 - A4249_RS00140 0.70 +1.4 24,085 - A4249_RS00140 0.70 +3.5 24,674 + A4249_RS00145 0.66 +1.5 24,674 + A4249_RS00145 0.66 +2.4 24,674 + A4249_RS00145 0.66 +0.4 24,675 - A4249_RS00145 0.66 +1.4 24,872 + -1.8 24,872 + +0.1 24,872 + -0.1 24,872 + -1.6 24,872 + +0.4 24,872 + +0.0 24,872 + -0.3 24,872 + +0.7 24,872 + +0.8 24,872 + -1.2 24,872 - +0.4 24,873 - +1.6 24,873 - -2.0 24,873 - -0.3 24,921 + -0.1 25,451 - A4249_RS00150 0.40 -0.6 25,451 - A4249_RS00150 0.40 +1.9 25,451 - A4249_RS00150 0.40 -2.1 25,756 + A4249_RS00150 0.65 -1.6 25,756 + A4249_RS00150 0.65 -0.4 25,771 + A4249_RS00150 0.66 -0.4 25,783 + A4249_RS00150 0.67 -0.7 25,783 + A4249_RS00150 0.67 +0.8 25,783 + A4249_RS00150 0.67 -0.7 25,783 + A4249_RS00150 0.67 +0.2 25,784 - A4249_RS00150 0.67 -0.1 25,784 - A4249_RS00150 0.67 -0.6 25,784 - A4249_RS00150 0.67 -0.3 25,784 - A4249_RS00150 0.67 -1.2 25,784 - A4249_RS00150 0.67 +0.6 25,784 - A4249_RS00150 0.67 -0.7 25,800 - A4249_RS00150 0.69 -0.3 25,800 - A4249_RS00150 0.69 +0.0 25,800 - A4249_RS00150 0.69 +0.3 25,810 + A4249_RS00150 0.69 -0.9 25,810 + A4249_RS00150 0.69 -1.0
Or see this region's nucleotide sequence