Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00635

Experiment: D-Glucose (C); 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00630 and A4249_RS00635 overlap by 4 nucleotidesA4249_RS00635 and A4249_RS00640 are separated by 21 nucleotides A4249_RS00630: A4249_RS00630 - L-aspartate oxidase, at 113,185 to 114,699 _RS00630 A4249_RS00635: A4249_RS00635 - carboxylating nicotinate-nucleotide diphosphorylase, at 114,696 to 115,553 _RS00635 A4249_RS00640: A4249_RS00640 - cell wall hydrolase, at 115,575 to 116,699 _RS00640 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 113.873 kb on + strand, within A4249_RS00630at 113.873 kb on + strand, within A4249_RS00630at 113.873 kb on + strand, within A4249_RS00630at 113.873 kb on + strand, within A4249_RS00630at 113.873 kb on + strand, within A4249_RS00630at 113.874 kb on - strand, within A4249_RS00630at 113.892 kb on + strand, within A4249_RS00630at 113.981 kb on + strand, within A4249_RS00630at 113.981 kb on + strand, within A4249_RS00630at 113.981 kb on + strand, within A4249_RS00630at 113.981 kb on + strand, within A4249_RS00630at 113.982 kb on - strand, within A4249_RS00630at 113.982 kb on - strand, within A4249_RS00630at 113.982 kb on - strand, within A4249_RS00630at 114.196 kb on + strand, within A4249_RS00630at 114.196 kb on + strand, within A4249_RS00630at 114.196 kb on + strand, within A4249_RS00630at 114.196 kb on + strand, within A4249_RS00630at 114.196 kb on + strand, within A4249_RS00630at 114.197 kb on - strand, within A4249_RS00630at 114.197 kb on - strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.201 kb on + strand, within A4249_RS00630at 114.202 kb on - strand, within A4249_RS00630at 114.202 kb on - strand, within A4249_RS00630at 114.253 kb on + strand, within A4249_RS00630at 114.253 kb on + strand, within A4249_RS00630at 114.254 kb on - strand, within A4249_RS00630at 114.254 kb on - strand, within A4249_RS00630at 114.254 kb on - strand, within A4249_RS00630at 114.254 kb on - strand, within A4249_RS00630at 114.254 kb on - strand, within A4249_RS00630at 114.399 kb on + strand, within A4249_RS00630at 114.399 kb on + strand, within A4249_RS00630at 114.399 kb on + strand, within A4249_RS00630at 114.399 kb on + strand, within A4249_RS00630at 114.400 kb on - strand, within A4249_RS00630at 114.400 kb on - strand, within A4249_RS00630at 114.400 kb on - strand, within A4249_RS00630at 114.400 kb on - strand, within A4249_RS00630at 114.400 kb on - strand, within A4249_RS00630at 114.488 kb on + strand, within A4249_RS00630at 114.488 kb on + strand, within A4249_RS00630at 114.488 kb on + strand, within A4249_RS00630at 114.488 kb on + strand, within A4249_RS00630at 114.488 kb on + strand, within A4249_RS00630at 114.489 kb on - strand, within A4249_RS00630at 114.489 kb on - strand, within A4249_RS00630at 114.489 kb on - strand, within A4249_RS00630at 114.489 kb on - strand, within A4249_RS00630at 114.489 kb on - strand, within A4249_RS00630at 114.611 kb on - strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.651 kb on + strandat 114.652 kb on - strandat 114.652 kb on - strandat 114.734 kb on - strandat 115.042 kb on + strand, within A4249_RS00635at 115.043 kb on - strand, within A4249_RS00635at 115.043 kb on - strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.053 kb on + strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.054 kb on - strand, within A4249_RS00635at 115.095 kb on - strand, within A4249_RS00635at 115.318 kb on + strand, within A4249_RS00635at 115.318 kb on + strand, within A4249_RS00635at 115.319 kb on - strand, within A4249_RS00635at 115.319 kb on - strand, within A4249_RS00635at 115.849 kb on + strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.850 kb on - strand, within A4249_RS00640at 115.892 kb on - strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.230 kb on + strand, within A4249_RS00640at 116.231 kb on - strand, within A4249_RS00640at 116.233 kb on + strand, within A4249_RS00640at 116.234 kb on - strand, within A4249_RS00640at 116.425 kb on + strand, within A4249_RS00640at 116.425 kb on + strand, within A4249_RS00640

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 30C
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113,873 + A4249_RS00630 0.45 +0.6
113,873 + A4249_RS00630 0.45 -0.3
113,873 + A4249_RS00630 0.45 +1.0
113,873 + A4249_RS00630 0.45 -1.6
113,873 + A4249_RS00630 0.45 -0.2
113,874 - A4249_RS00630 0.45 -0.4
113,892 + A4249_RS00630 0.47 +0.2
113,981 + A4249_RS00630 0.53 -0.4
113,981 + A4249_RS00630 0.53 -2.4
113,981 + A4249_RS00630 0.53 +1.0
113,981 + A4249_RS00630 0.53 +2.0
113,982 - A4249_RS00630 0.53 -3.1
113,982 - A4249_RS00630 0.53 +0.6
113,982 - A4249_RS00630 0.53 -0.6
114,196 + A4249_RS00630 0.67 -0.3
114,196 + A4249_RS00630 0.67 +1.0
114,196 + A4249_RS00630 0.67 -1.2
114,196 + A4249_RS00630 0.67 +0.4
114,196 + A4249_RS00630 0.67 +1.2
114,197 - A4249_RS00630 0.67 -1.1
114,197 - A4249_RS00630 0.67 +1.2
114,201 + A4249_RS00630 0.67 -1.2
114,201 + A4249_RS00630 0.67 -0.6
114,201 + A4249_RS00630 0.67 +1.9
114,201 + A4249_RS00630 0.67 -1.2
114,201 + A4249_RS00630 0.67 +1.4
114,201 + A4249_RS00630 0.67 +2.2
114,202 - A4249_RS00630 0.67 +0.4
114,202 - A4249_RS00630 0.67 +1.2
114,253 + A4249_RS00630 0.70 +0.3
114,253 + A4249_RS00630 0.70 -1.4
114,254 - A4249_RS00630 0.71 -1.6
114,254 - A4249_RS00630 0.71 +0.4
114,254 - A4249_RS00630 0.71 +0.3
114,254 - A4249_RS00630 0.71 -0.5
114,254 - A4249_RS00630 0.71 -1.4
114,399 + A4249_RS00630 0.80 +1.6
114,399 + A4249_RS00630 0.80 +0.4
114,399 + A4249_RS00630 0.80 +0.4
114,399 + A4249_RS00630 0.80 -0.7
114,400 - A4249_RS00630 0.80 -0.4
114,400 - A4249_RS00630 0.80 -0.1
114,400 - A4249_RS00630 0.80 +0.4
114,400 - A4249_RS00630 0.80 -1.4
114,400 - A4249_RS00630 0.80 +0.4
114,488 + A4249_RS00630 0.86 -0.9
114,488 + A4249_RS00630 0.86 -0.3
114,488 + A4249_RS00630 0.86 +0.2
114,488 + A4249_RS00630 0.86 -0.3
114,488 + A4249_RS00630 0.86 -1.9
114,489 - A4249_RS00630 0.86 +0.4
114,489 - A4249_RS00630 0.86 -0.7
114,489 - A4249_RS00630 0.86 -0.5
114,489 - A4249_RS00630 0.86 +0.3
114,489 - A4249_RS00630 0.86 -0.7
114,611 - +0.7
114,651 + +0.7
114,651 + +0.4
114,651 + +0.0
114,651 + -0.4
114,652 - +0.4
114,652 - +0.9
114,734 - +0.6
115,042 + A4249_RS00635 0.40 -0.0
115,043 - A4249_RS00635 0.40 +0.8
115,043 - A4249_RS00635 0.40 +1.7
115,053 + A4249_RS00635 0.42 -0.5
115,053 + A4249_RS00635 0.42 -2.8
115,053 + A4249_RS00635 0.42 +0.6
115,053 + A4249_RS00635 0.42 +0.4
115,053 + A4249_RS00635 0.42 -0.4
115,053 + A4249_RS00635 0.42 +0.1
115,053 + A4249_RS00635 0.42 +0.2
115,053 + A4249_RS00635 0.42 +1.0
115,053 + A4249_RS00635 0.42 -0.1
115,053 + A4249_RS00635 0.42 +0.6
115,054 - A4249_RS00635 0.42 -1.1
115,054 - A4249_RS00635 0.42 +0.2
115,054 - A4249_RS00635 0.42 -0.7
115,054 - A4249_RS00635 0.42 +0.3
115,054 - A4249_RS00635 0.42 -1.2
115,054 - A4249_RS00635 0.42 +1.4
115,054 - A4249_RS00635 0.42 +1.6
115,054 - A4249_RS00635 0.42 -0.5
115,054 - A4249_RS00635 0.42 -0.9
115,054 - A4249_RS00635 0.42 -0.3
115,095 - A4249_RS00635 0.47 -0.2
115,318 + A4249_RS00635 0.72 -0.2
115,318 + A4249_RS00635 0.72 +1.0
115,319 - A4249_RS00635 0.73 +0.3
115,319 - A4249_RS00635 0.73 -0.7
115,849 + A4249_RS00640 0.24 +0.6
115,850 - A4249_RS00640 0.24 +0.1
115,850 - A4249_RS00640 0.24 +0.0
115,850 - A4249_RS00640 0.24 -0.6
115,892 - A4249_RS00640 0.28 +0.3
116,230 + A4249_RS00640 0.58 +0.7
116,230 + A4249_RS00640 0.58 +1.0
116,230 + A4249_RS00640 0.58 +0.0
116,231 - A4249_RS00640 0.58 -0.6
116,233 + A4249_RS00640 0.58 +1.4
116,234 - A4249_RS00640 0.59 -2.5
116,425 + A4249_RS00640 0.76 -0.7
116,425 + A4249_RS00640 0.76 +0.1

Or see this region's nucleotide sequence