Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11940

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoE and OKGIIK_11940 are separated by 113 nucleotidesOKGIIK_11940 and OKGIIK_11945 are separated by 12 nucleotides OKGIIK_11935: atoE - Short chain fatty acid transporter, at 2,569,224 to 2,570,636 atoE OKGIIK_11940: OKGIIK_11940 - MacB-PCD domain-containing protein, at 2,570,750 to 2,572,075 _11940 OKGIIK_11945: OKGIIK_11945 - FtsX-like permease family, at 2,572,088 to 2,573,254 _11945 Position (kb) 2570 2571 2572 2573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2569.780 kb on + strand, within atoEat 2569.866 kb on + strand, within atoEat 2569.866 kb on + strand, within atoEat 2569.866 kb on + strand, within atoEat 2569.867 kb on - strand, within atoEat 2569.867 kb on - strand, within atoEat 2569.867 kb on - strand, within atoEat 2569.974 kb on + strand, within atoEat 2569.974 kb on + strand, within atoEat 2569.974 kb on + strand, within atoEat 2569.974 kb on + strand, within atoEat 2569.975 kb on - strand, within atoEat 2570.079 kb on + strand, within atoEat 2570.079 kb on + strand, within atoEat 2570.079 kb on + strand, within atoEat 2570.079 kb on + strand, within atoEat 2570.079 kb on + strand, within atoEat 2570.080 kb on - strand, within atoEat 2570.080 kb on - strand, within atoEat 2570.080 kb on - strand, within atoEat 2570.080 kb on - strand, within atoEat 2570.196 kb on + strand, within atoEat 2570.197 kb on - strand, within atoEat 2570.197 kb on - strand, within atoEat 2570.197 kb on - strand, within atoEat 2570.323 kb on - strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.385 kb on + strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.386 kb on - strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.442 kb on + strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.443 kb on - strand, within atoEat 2570.538 kb on + strandat 2570.539 kb on - strandat 2570.593 kb on + strandat 2570.594 kb on - strandat 2570.594 kb on - strandat 2570.613 kb on + strandat 2570.613 kb on + strandat 2570.613 kb on + strandat 2570.613 kb on + strandat 2570.613 kb on + strandat 2570.613 kb on + strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.614 kb on - strandat 2570.646 kb on + strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.647 kb on - strandat 2570.712 kb on + strandat 2570.712 kb on + strandat 2570.751 kb on + strandat 2570.902 kb on + strand, within OKGIIK_11940at 2570.902 kb on + strand, within OKGIIK_11940at 2570.929 kb on - strand, within OKGIIK_11940at 2570.929 kb on - strand, within OKGIIK_11940at 2570.929 kb on - strand, within OKGIIK_11940at 2571.094 kb on + strand, within OKGIIK_11940at 2571.094 kb on + strand, within OKGIIK_11940at 2571.094 kb on + strand, within OKGIIK_11940at 2571.094 kb on + strand, within OKGIIK_11940at 2571.095 kb on - strand, within OKGIIK_11940at 2571.095 kb on - strand, within OKGIIK_11940at 2571.095 kb on - strand, within OKGIIK_11940at 2571.095 kb on - strand, within OKGIIK_11940at 2571.096 kb on - strand, within OKGIIK_11940at 2571.195 kb on + strand, within OKGIIK_11940at 2571.195 kb on + strand, within OKGIIK_11940at 2571.195 kb on + strand, within OKGIIK_11940at 2571.195 kb on + strand, within OKGIIK_11940at 2571.196 kb on - strand, within OKGIIK_11940at 2571.196 kb on - strand, within OKGIIK_11940at 2571.196 kb on - strand, within OKGIIK_11940at 2571.321 kb on + strand, within OKGIIK_11940at 2571.321 kb on + strand, within OKGIIK_11940at 2571.322 kb on - strand, within OKGIIK_11940at 2571.322 kb on - strand, within OKGIIK_11940at 2571.322 kb on - strand, within OKGIIK_11940at 2571.326 kb on - strand, within OKGIIK_11940at 2571.326 kb on - strand, within OKGIIK_11940at 2571.796 kb on - strand, within OKGIIK_11940at 2572.345 kb on + strand, within OKGIIK_11945at 2572.345 kb on + strand, within OKGIIK_11945at 2572.345 kb on + strand, within OKGIIK_11945at 2572.346 kb on - strand, within OKGIIK_11945at 2572.346 kb on - strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.620 kb on + strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.621 kb on - strand, within OKGIIK_11945at 2572.642 kb on + strand, within OKGIIK_11945at 2572.642 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.644 kb on + strand, within OKGIIK_11945at 2572.645 kb on - strand, within OKGIIK_11945at 2572.645 kb on - strand, within OKGIIK_11945at 2572.665 kb on + strand, within OKGIIK_11945at 2572.665 kb on + strand, within OKGIIK_11945at 2572.665 kb on - strand, within OKGIIK_11945at 2572.666 kb on - strand, within OKGIIK_11945at 2572.666 kb on - strand, within OKGIIK_11945at 2572.666 kb on - strand, within OKGIIK_11945at 2572.666 kb on - strand, within OKGIIK_11945at 2572.824 kb on + strand, within OKGIIK_11945at 2572.824 kb on + strand, within OKGIIK_11945at 2572.824 kb on + strand, within OKGIIK_11945at 2572.824 kb on + strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.825 kb on - strand, within OKGIIK_11945at 2572.914 kb on + strand, within OKGIIK_11945at 2572.915 kb on - strand, within OKGIIK_11945at 2572.915 kb on - strand, within OKGIIK_11945at 2572.915 kb on - strand, within OKGIIK_11945at 2572.915 kb on - strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.926 kb on + strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.927 kb on - strand, within OKGIIK_11945at 2572.974 kb on + strand, within OKGIIK_11945at 2572.975 kb on - strand, within OKGIIK_11945at 2572.975 kb on - strand, within OKGIIK_11945

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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2,569,780 + atoE OKGIIK_11935 0.39 -1.0
2,569,866 + atoE OKGIIK_11935 0.45 -0.0
2,569,866 + atoE OKGIIK_11935 0.45 +0.2
2,569,866 + atoE OKGIIK_11935 0.45 +1.0
2,569,867 - atoE OKGIIK_11935 0.46 -0.5
2,569,867 - atoE OKGIIK_11935 0.46 -1.0
2,569,867 - atoE OKGIIK_11935 0.46 -0.2
2,569,974 + atoE OKGIIK_11935 0.53 -1.2
2,569,974 + atoE OKGIIK_11935 0.53 +0.2
2,569,974 + atoE OKGIIK_11935 0.53 -1.8
2,569,974 + atoE OKGIIK_11935 0.53 +0.4
2,569,975 - atoE OKGIIK_11935 0.53 -0.1
2,570,079 + atoE OKGIIK_11935 0.61 +0.3
2,570,079 + atoE OKGIIK_11935 0.61 +0.4
2,570,079 + atoE OKGIIK_11935 0.61 -1.2
2,570,079 + atoE OKGIIK_11935 0.61 -1.0
2,570,079 + atoE OKGIIK_11935 0.61 -0.2
2,570,080 - atoE OKGIIK_11935 0.61 -1.7
2,570,080 - atoE OKGIIK_11935 0.61 +0.1
2,570,080 - atoE OKGIIK_11935 0.61 -2.2
2,570,080 - atoE OKGIIK_11935 0.61 +0.4
2,570,196 + atoE OKGIIK_11935 0.69 +0.8
2,570,197 - atoE OKGIIK_11935 0.69 -1.2
2,570,197 - atoE OKGIIK_11935 0.69 +0.1
2,570,197 - atoE OKGIIK_11935 0.69 +0.2
2,570,323 - atoE OKGIIK_11935 0.78 +0.1
2,570,385 + atoE OKGIIK_11935 0.82 -1.4
2,570,385 + atoE OKGIIK_11935 0.82 -0.9
2,570,385 + atoE OKGIIK_11935 0.82 +0.9
2,570,385 + atoE OKGIIK_11935 0.82 -1.5
2,570,385 + atoE OKGIIK_11935 0.82 -1.2
2,570,385 + atoE OKGIIK_11935 0.82 +0.2
2,570,385 + atoE OKGIIK_11935 0.82 -0.5
2,570,385 + atoE OKGIIK_11935 0.82 -0.2
2,570,385 + atoE OKGIIK_11935 0.82 -0.0
2,570,386 - atoE OKGIIK_11935 0.82 -1.8
2,570,386 - atoE OKGIIK_11935 0.82 +0.9
2,570,386 - atoE OKGIIK_11935 0.82 +0.2
2,570,386 - atoE OKGIIK_11935 0.82 -0.8
2,570,386 - atoE OKGIIK_11935 0.82 -1.7
2,570,386 - atoE OKGIIK_11935 0.82 -0.0
2,570,386 - atoE OKGIIK_11935 0.82 -0.3
2,570,386 - atoE OKGIIK_11935 0.82 -0.4
2,570,386 - atoE OKGIIK_11935 0.82 +1.6
2,570,386 - atoE OKGIIK_11935 0.82 -0.7
2,570,386 - atoE OKGIIK_11935 0.82 -0.1
2,570,442 + atoE OKGIIK_11935 0.86 -0.4
2,570,442 + atoE OKGIIK_11935 0.86 +1.5
2,570,442 + atoE OKGIIK_11935 0.86 -0.1
2,570,442 + atoE OKGIIK_11935 0.86 -0.2
2,570,442 + atoE OKGIIK_11935 0.86 -0.0
2,570,442 + atoE OKGIIK_11935 0.86 -0.7
2,570,442 + atoE OKGIIK_11935 0.86 -0.0
2,570,442 + atoE OKGIIK_11935 0.86 -0.7
2,570,442 + atoE OKGIIK_11935 0.86 +0.9
2,570,442 + atoE OKGIIK_11935 0.86 -0.3
2,570,442 + atoE OKGIIK_11935 0.86 -0.0
2,570,442 + atoE OKGIIK_11935 0.86 +0.6
2,570,442 + atoE OKGIIK_11935 0.86 +1.3
2,570,442 + atoE OKGIIK_11935 0.86 +0.5
2,570,443 - atoE OKGIIK_11935 0.86 -0.2
2,570,443 - atoE OKGIIK_11935 0.86 -1.2
2,570,443 - atoE OKGIIK_11935 0.86 +0.8
2,570,443 - atoE OKGIIK_11935 0.86 -2.8
2,570,443 - atoE OKGIIK_11935 0.86 -0.3
2,570,443 - atoE OKGIIK_11935 0.86 +0.2
2,570,443 - atoE OKGIIK_11935 0.86 -1.0
2,570,443 - atoE OKGIIK_11935 0.86 -0.8
2,570,443 - atoE OKGIIK_11935 0.86 +1.8
2,570,443 - atoE OKGIIK_11935 0.86 +0.2
2,570,443 - atoE OKGIIK_11935 0.86 -0.4
2,570,443 - atoE OKGIIK_11935 0.86 +0.4
2,570,538 + +0.2
2,570,539 - +0.0
2,570,593 + +1.1
2,570,594 - -0.2
2,570,594 - -1.8
2,570,613 + +0.5
2,570,613 + -0.5
2,570,613 + -0.7
2,570,613 + -0.2
2,570,613 + +0.1
2,570,613 + -0.8
2,570,614 - +0.8
2,570,614 - -2.1
2,570,614 - -0.5
2,570,614 - -1.5
2,570,614 - -0.4
2,570,614 - +0.3
2,570,614 - +0.8
2,570,614 - +1.4
2,570,646 + -1.7
2,570,647 - +0.1
2,570,647 - -0.2
2,570,647 - -0.4
2,570,647 - -0.4
2,570,647 - -0.1
2,570,647 - -0.5
2,570,647 - -0.3
2,570,712 + +0.8
2,570,712 + -1.2
2,570,751 + -0.5
2,570,902 + OKGIIK_11940 0.11 +1.1
2,570,902 + OKGIIK_11940 0.11 +1.0
2,570,929 - OKGIIK_11940 0.13 -1.2
2,570,929 - OKGIIK_11940 0.13 -1.7
2,570,929 - OKGIIK_11940 0.13 -1.3
2,571,094 + OKGIIK_11940 0.26 -0.1
2,571,094 + OKGIIK_11940 0.26 -0.7
2,571,094 + OKGIIK_11940 0.26 +0.1
2,571,094 + OKGIIK_11940 0.26 -0.5
2,571,095 - OKGIIK_11940 0.26 -0.2
2,571,095 - OKGIIK_11940 0.26 +1.0
2,571,095 - OKGIIK_11940 0.26 -0.5
2,571,095 - OKGIIK_11940 0.26 -1.2
2,571,096 - OKGIIK_11940 0.26 -0.0
2,571,195 + OKGIIK_11940 0.34 -0.2
2,571,195 + OKGIIK_11940 0.34 -1.4
2,571,195 + OKGIIK_11940 0.34 -0.0
2,571,195 + OKGIIK_11940 0.34 +0.8
2,571,196 - OKGIIK_11940 0.34 -1.0
2,571,196 - OKGIIK_11940 0.34 -1.0
2,571,196 - OKGIIK_11940 0.34 +0.0
2,571,321 + OKGIIK_11940 0.43 +1.8
2,571,321 + OKGIIK_11940 0.43 -0.4
2,571,322 - OKGIIK_11940 0.43 -2.5
2,571,322 - OKGIIK_11940 0.43 -0.2
2,571,322 - OKGIIK_11940 0.43 +0.9
2,571,326 - OKGIIK_11940 0.43 +0.8
2,571,326 - OKGIIK_11940 0.43 -1.0
2,571,796 - OKGIIK_11940 0.79 +1.4
2,572,345 + OKGIIK_11945 0.22 -1.2
2,572,345 + OKGIIK_11945 0.22 +0.8
2,572,345 + OKGIIK_11945 0.22 -0.7
2,572,346 - OKGIIK_11945 0.22 +0.2
2,572,346 - OKGIIK_11945 0.22 -0.2
2,572,620 + OKGIIK_11945 0.46 +0.3
2,572,620 + OKGIIK_11945 0.46 +0.3
2,572,620 + OKGIIK_11945 0.46 +0.1
2,572,620 + OKGIIK_11945 0.46 +1.5
2,572,620 + OKGIIK_11945 0.46 +0.2
2,572,620 + OKGIIK_11945 0.46 +1.4
2,572,620 + OKGIIK_11945 0.46 +1.0
2,572,621 - OKGIIK_11945 0.46 +0.6
2,572,621 - OKGIIK_11945 0.46 +0.5
2,572,621 - OKGIIK_11945 0.46 -0.7
2,572,621 - OKGIIK_11945 0.46 -0.5
2,572,621 - OKGIIK_11945 0.46 -1.5
2,572,621 - OKGIIK_11945 0.46 -0.2
2,572,621 - OKGIIK_11945 0.46 +0.0
2,572,642 + OKGIIK_11945 0.47 -0.7
2,572,642 + OKGIIK_11945 0.47 -0.0
2,572,644 + OKGIIK_11945 0.48 -0.0
2,572,644 + OKGIIK_11945 0.48 -0.7
2,572,644 + OKGIIK_11945 0.48 +0.2
2,572,644 + OKGIIK_11945 0.48 +1.0
2,572,644 + OKGIIK_11945 0.48 -1.0
2,572,644 + OKGIIK_11945 0.48 +0.1
2,572,645 - OKGIIK_11945 0.48 +0.8
2,572,645 - OKGIIK_11945 0.48 -0.2
2,572,665 + OKGIIK_11945 0.49 -1.2
2,572,665 + OKGIIK_11945 0.49 +0.4
2,572,665 - OKGIIK_11945 0.49 -0.5
2,572,666 - OKGIIK_11945 0.50 +0.1
2,572,666 - OKGIIK_11945 0.50 +1.1
2,572,666 - OKGIIK_11945 0.50 -0.9
2,572,666 - OKGIIK_11945 0.50 -0.6
2,572,824 + OKGIIK_11945 0.63 +1.8
2,572,824 + OKGIIK_11945 0.63 +0.8
2,572,824 + OKGIIK_11945 0.63 +1.4
2,572,824 + OKGIIK_11945 0.63 -0.1
2,572,825 - OKGIIK_11945 0.63 +0.7
2,572,825 - OKGIIK_11945 0.63 +1.2
2,572,825 - OKGIIK_11945 0.63 -0.5
2,572,825 - OKGIIK_11945 0.63 +1.2
2,572,825 - OKGIIK_11945 0.63 +1.0
2,572,825 - OKGIIK_11945 0.63 -0.5
2,572,825 - OKGIIK_11945 0.63 +0.8
2,572,825 - OKGIIK_11945 0.63 -0.5
2,572,825 - OKGIIK_11945 0.63 -0.8
2,572,825 - OKGIIK_11945 0.63 -1.1
2,572,914 + OKGIIK_11945 0.71 +0.3
2,572,915 - OKGIIK_11945 0.71 +0.3
2,572,915 - OKGIIK_11945 0.71 +0.8
2,572,915 - OKGIIK_11945 0.71 +0.8
2,572,915 - OKGIIK_11945 0.71 -1.7
2,572,926 + OKGIIK_11945 0.72 +1.0
2,572,926 + OKGIIK_11945 0.72 -1.7
2,572,926 + OKGIIK_11945 0.72 -0.2
2,572,926 + OKGIIK_11945 0.72 -1.0
2,572,926 + OKGIIK_11945 0.72 -0.5
2,572,926 + OKGIIK_11945 0.72 +1.0
2,572,926 + OKGIIK_11945 0.72 -0.5
2,572,927 - OKGIIK_11945 0.72 -1.3
2,572,927 - OKGIIK_11945 0.72 -0.2
2,572,927 - OKGIIK_11945 0.72 -0.0
2,572,927 - OKGIIK_11945 0.72 -1.4
2,572,927 - OKGIIK_11945 0.72 -0.4
2,572,927 - OKGIIK_11945 0.72 -0.0
2,572,927 - OKGIIK_11945 0.72 -0.2
2,572,927 - OKGIIK_11945 0.72 -1.0
2,572,974 + OKGIIK_11945 0.76 +0.3
2,572,975 - OKGIIK_11945 0.76 -0.0
2,572,975 - OKGIIK_11945 0.76 +2.4

Or see this region's nucleotide sequence