Strain Fitness in Erwinia amylovora T8 around OLJFJH_10885

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10880 and OLJFJH_10885 are separated by 1 nucleotidesOLJFJH_10885 and OLJFJH_10890 are separated by 74 nucleotides OLJFJH_10880: OLJFJH_10880 - NAD-dependent DNA ligase LigA, at 2,272,081 to 2,274,093 _10880 OLJFJH_10885: OLJFJH_10885 - cytoplasmic protein, at 2,274,095 to 2,274,313 _10885 OLJFJH_10890: OLJFJH_10890 - Sodium Bile acid symporter family, at 2,274,388 to 2,275,413 _10890 Position (kb) 2274 2275Strain fitness (log2 ratio) -1 0 1at 2274.074 kb on + strandat 2274.074 kb on + strandat 2274.091 kb on + strandat 2274.092 kb on - strandat 2274.185 kb on + strand, within OLJFJH_10885at 2274.186 kb on - strand, within OLJFJH_10885at 2274.186 kb on - strand, within OLJFJH_10885at 2274.326 kb on + strandat 2274.369 kb on - strandat 2274.786 kb on - strand, within OLJFJH_10890at 2274.790 kb on + strand, within OLJFJH_10890at 2274.791 kb on - strand, within OLJFJH_10890at 2274.801 kb on + strand, within OLJFJH_10890at 2274.801 kb on + strand, within OLJFJH_10890at 2274.801 kb on + strand, within OLJFJH_10890at 2274.801 kb on + strand, within OLJFJH_10890at 2274.909 kb on + strand, within OLJFJH_10890at 2274.910 kb on - strand, within OLJFJH_10890at 2274.990 kb on + strand, within OLJFJH_10890at 2274.991 kb on - strand, within OLJFJH_10890at 2275.104 kb on + strand, within OLJFJH_10890at 2275.106 kb on + strand, within OLJFJH_10890at 2275.106 kb on + strand, within OLJFJH_10890at 2275.106 kb on + strand, within OLJFJH_10890at 2275.107 kb on - strand, within OLJFJH_10890at 2275.107 kb on - strand, within OLJFJH_10890at 2275.107 kb on - strand, within OLJFJH_10890at 2275.122 kb on - strand, within OLJFJH_10890at 2275.122 kb on - strand, within OLJFJH_10890at 2275.275 kb on + strand, within OLJFJH_10890at 2275.276 kb on - strand, within OLJFJH_10890

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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2,274,074 + +0.0
2,274,074 + +0.1
2,274,091 + +0.3
2,274,092 - -0.1
2,274,185 + OLJFJH_10885 0.41 -0.4
2,274,186 - OLJFJH_10885 0.42 -0.2
2,274,186 - OLJFJH_10885 0.42 -1.1
2,274,326 + +0.4
2,274,369 - +0.1
2,274,786 - OLJFJH_10890 0.39 +0.1
2,274,790 + OLJFJH_10890 0.39 -0.2
2,274,791 - OLJFJH_10890 0.39 -0.3
2,274,801 + OLJFJH_10890 0.40 +0.1
2,274,801 + OLJFJH_10890 0.40 +0.0
2,274,801 + OLJFJH_10890 0.40 +0.6
2,274,801 + OLJFJH_10890 0.40 +0.0
2,274,909 + OLJFJH_10890 0.51 -0.1
2,274,910 - OLJFJH_10890 0.51 -0.2
2,274,990 + OLJFJH_10890 0.59 -0.1
2,274,991 - OLJFJH_10890 0.59 -0.4
2,275,104 + OLJFJH_10890 0.70 -0.2
2,275,106 + OLJFJH_10890 0.70 -0.1
2,275,106 + OLJFJH_10890 0.70 -0.2
2,275,106 + OLJFJH_10890 0.70 +0.2
2,275,107 - OLJFJH_10890 0.70 -0.4
2,275,107 - OLJFJH_10890 0.70 +0.3
2,275,107 - OLJFJH_10890 0.70 +0.3
2,275,122 - OLJFJH_10890 0.72 +0.2
2,275,122 - OLJFJH_10890 0.72 +0.2
2,275,275 + OLJFJH_10890 0.86 +0.3
2,275,276 - OLJFJH_10890 0.87 +0.1

Or see this region's nucleotide sequence