Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06070

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06069 and MPMX19_06070 overlap by 4 nucleotidesMPMX19_06070 and MPMX19_06071 overlap by 4 nucleotides MPMX19_06069: MPMX19_06069 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 236,113 to 237,396 _06069 MPMX19_06070: MPMX19_06070 - hypothetical protein, at 237,393 to 237,659 _06070 MPMX19_06071: MPMX19_06071 - Nitric oxide reductase transcription regulator NorR2, at 237,656 to 239,257 _06071 Position (kb) 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.512 kb on + strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.513 kb on - strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.584 kb on + strand, within MPMX19_06069at 236.585 kb on + strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.585 kb on - strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.698 kb on + strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.699 kb on - strand, within MPMX19_06069at 236.854 kb on + strand, within MPMX19_06069at 236.854 kb on + strand, within MPMX19_06069at 236.854 kb on + strand, within MPMX19_06069at 236.855 kb on - strand, within MPMX19_06069at 236.855 kb on - strand, within MPMX19_06069at 236.855 kb on - strand, within MPMX19_06069at 236.881 kb on + strand, within MPMX19_06069at 236.881 kb on + strand, within MPMX19_06069at 236.881 kb on + strand, within MPMX19_06069at 236.881 kb on + strand, within MPMX19_06069at 236.882 kb on - strand, within MPMX19_06069at 236.882 kb on - strand, within MPMX19_06069at 236.882 kb on - strand, within MPMX19_06069at 236.908 kb on + strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 236.909 kb on - strand, within MPMX19_06069at 237.052 kb on + strand, within MPMX19_06069at 237.053 kb on - strand, within MPMX19_06069at 237.163 kb on + strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.164 kb on - strand, within MPMX19_06069at 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.394 kb on + strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 237.395 kb on - strandat 238.014 kb on + strand, within MPMX19_06071at 238.014 kb on + strand, within MPMX19_06071at 238.015 kb on - strand, within MPMX19_06071at 238.015 kb on - strand, within MPMX19_06071at 238.015 kb on - strand, within MPMX19_06071at 238.015 kb on - strand, within MPMX19_06071at 238.155 kb on + strand, within MPMX19_06071at 238.156 kb on - strand, within MPMX19_06071at 238.156 kb on - strand, within MPMX19_06071at 238.156 kb on - strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.173 kb on + strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071at 238.174 kb on - strand, within MPMX19_06071

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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236,512 + MPMX19_06069 0.31 -0.4
236,512 + MPMX19_06069 0.31 +0.2
236,512 + MPMX19_06069 0.31 +0.3
236,512 + MPMX19_06069 0.31 -0.8
236,512 + MPMX19_06069 0.31 -0.7
236,512 + MPMX19_06069 0.31 -0.6
236,512 + MPMX19_06069 0.31 -0.6
236,513 - MPMX19_06069 0.31 -1.2
236,513 - MPMX19_06069 0.31 +0.3
236,513 - MPMX19_06069 0.31 +0.4
236,513 - MPMX19_06069 0.31 -1.0
236,513 - MPMX19_06069 0.31 +1.0
236,513 - MPMX19_06069 0.31 +0.0
236,513 - MPMX19_06069 0.31 -1.2
236,513 - MPMX19_06069 0.31 -1.3
236,584 + MPMX19_06069 0.37 -2.2
236,584 + MPMX19_06069 0.37 -1.9
236,584 + MPMX19_06069 0.37 -2.6
236,584 + MPMX19_06069 0.37 +0.4
236,584 + MPMX19_06069 0.37 -0.4
236,584 + MPMX19_06069 0.37 -1.0
236,584 + MPMX19_06069 0.37 +0.2
236,584 + MPMX19_06069 0.37 -0.1
236,584 + MPMX19_06069 0.37 -0.6
236,584 + MPMX19_06069 0.37 -0.6
236,584 + MPMX19_06069 0.37 +0.3
236,585 + MPMX19_06069 0.37 -0.4
236,585 - MPMX19_06069 0.37 -0.1
236,585 - MPMX19_06069 0.37 +0.5
236,585 - MPMX19_06069 0.37 -1.8
236,585 - MPMX19_06069 0.37 -0.1
236,585 - MPMX19_06069 0.37 +0.3
236,585 - MPMX19_06069 0.37 +0.4
236,585 - MPMX19_06069 0.37 -0.1
236,585 - MPMX19_06069 0.37 +0.0
236,585 - MPMX19_06069 0.37 +0.3
236,585 - MPMX19_06069 0.37 +1.1
236,585 - MPMX19_06069 0.37 -0.7
236,585 - MPMX19_06069 0.37 -1.3
236,698 + MPMX19_06069 0.46 -0.3
236,698 + MPMX19_06069 0.46 +0.6
236,698 + MPMX19_06069 0.46 -0.3
236,698 + MPMX19_06069 0.46 +0.0
236,698 + MPMX19_06069 0.46 +0.0
236,698 + MPMX19_06069 0.46 +0.4
236,699 - MPMX19_06069 0.46 -1.6
236,699 - MPMX19_06069 0.46 -0.1
236,699 - MPMX19_06069 0.46 -1.0
236,699 - MPMX19_06069 0.46 +1.3
236,699 - MPMX19_06069 0.46 -1.4
236,699 - MPMX19_06069 0.46 +0.1
236,699 - MPMX19_06069 0.46 +1.1
236,854 + MPMX19_06069 0.58 +0.6
236,854 + MPMX19_06069 0.58 -0.1
236,854 + MPMX19_06069 0.58 -1.6
236,855 - MPMX19_06069 0.58 -0.3
236,855 - MPMX19_06069 0.58 +0.6
236,855 - MPMX19_06069 0.58 -0.9
236,881 + MPMX19_06069 0.60 +0.1
236,881 + MPMX19_06069 0.60 +0.2
236,881 + MPMX19_06069 0.60 +0.8
236,881 + MPMX19_06069 0.60 +0.4
236,882 - MPMX19_06069 0.60 -1.4
236,882 - MPMX19_06069 0.60 +0.6
236,882 - MPMX19_06069 0.60 -1.2
236,908 + MPMX19_06069 0.62 -2.7
236,909 - MPMX19_06069 0.62 -0.5
236,909 - MPMX19_06069 0.62 -2.2
236,909 - MPMX19_06069 0.62 -1.0
236,909 - MPMX19_06069 0.62 +1.0
236,909 - MPMX19_06069 0.62 +0.2
236,909 - MPMX19_06069 0.62 +0.1
237,052 + MPMX19_06069 0.73 +0.0
237,053 - MPMX19_06069 0.73 -0.5
237,163 + MPMX19_06069 0.82 +0.5
237,164 - MPMX19_06069 0.82 +0.6
237,164 - MPMX19_06069 0.82 -0.7
237,164 - MPMX19_06069 0.82 -0.2
237,164 - MPMX19_06069 0.82 -0.1
237,164 - MPMX19_06069 0.82 -1.7
237,164 - MPMX19_06069 0.82 -0.7
237,164 - MPMX19_06069 0.82 -1.2
237,164 - MPMX19_06069 0.82 +0.8
237,164 - MPMX19_06069 0.82 +1.6
237,164 - MPMX19_06069 0.82 -2.1
237,164 - MPMX19_06069 0.82 +0.9
237,164 - MPMX19_06069 0.82 +0.7
237,164 - MPMX19_06069 0.82 -1.2
237,164 - MPMX19_06069 0.82 -0.0
237,394 + -0.1
237,394 + -0.8
237,394 + +0.2
237,394 + -1.4
237,394 + -1.1
237,394 + -0.4
237,394 + +0.6
237,394 + -0.4
237,394 + -0.5
237,394 + +0.4
237,394 + -1.6
237,394 + -0.8
237,394 + -1.9
237,394 + -1.1
237,394 + -0.2
237,395 - +0.6
237,395 - -0.6
237,395 - -1.1
237,395 - +0.3
237,395 - -1.6
237,395 - -0.9
237,395 - +2.6
237,395 - -0.7
237,395 - -0.1
237,395 - +0.1
237,395 - +0.9
238,014 + MPMX19_06071 0.22 +0.0
238,014 + MPMX19_06071 0.22 -1.0
238,015 - MPMX19_06071 0.22 -1.3
238,015 - MPMX19_06071 0.22 +0.6
238,015 - MPMX19_06071 0.22 -0.6
238,015 - MPMX19_06071 0.22 +0.6
238,155 + MPMX19_06071 0.31 +0.9
238,156 - MPMX19_06071 0.31 +0.0
238,156 - MPMX19_06071 0.31 +0.0
238,156 - MPMX19_06071 0.31 -0.9
238,173 + MPMX19_06071 0.32 +0.0
238,173 + MPMX19_06071 0.32 -2.1
238,173 + MPMX19_06071 0.32 -0.4
238,173 + MPMX19_06071 0.32 +0.0
238,173 + MPMX19_06071 0.32 -0.6
238,173 + MPMX19_06071 0.32 -0.6
238,173 + MPMX19_06071 0.32 +0.6
238,173 + MPMX19_06071 0.32 -0.7
238,174 - MPMX19_06071 0.32 -2.3
238,174 - MPMX19_06071 0.32 -0.5
238,174 - MPMX19_06071 0.32 -0.6
238,174 - MPMX19_06071 0.32 +0.6
238,174 - MPMX19_06071 0.32 -0.5
238,174 - MPMX19_06071 0.32 +1.0

Or see this region's nucleotide sequence