Strain Fitness in Methylophilus sp. DMC18 around GFF669

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF668 and GFF669 are separated by 9 nucleotidesGFF669 and GFF670 are separated by 14 nucleotidesGFF670 and GFF671 are separated by 14 nucleotides GFF668 - Coenzyme PQQ synthesis protein B, at 744,490 to 745,431 GFF668 GFF669 - Pyrroloquinoline-quinone synthase, at 745,441 to 746,202 GFF669 GFF670 - PqqA binding protein, at 746,217 to 746,501 GFF670 GFF671 - PqqA peptide cyclase, at 746,516 to 747,697 GFF671 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1at 744.450 kb on + strandat 744.461 kb on + strandat 744.461 kb on + strandat 744.489 kb on + strandat 744.495 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.497 kb on + strandat 744.546 kb on + strandat 744.574 kb on - strandat 744.668 kb on + strand, within GFF668at 744.817 kb on + strand, within GFF668at 744.817 kb on + strand, within GFF668at 744.817 kb on + strand, within GFF668at 744.822 kb on + strand, within GFF668at 744.822 kb on + strand, within GFF668at 744.822 kb on + strand, within GFF668at 744.883 kb on + strand, within GFF668at 744.883 kb on + strand, within GFF668at 744.934 kb on + strand, within GFF668at 744.934 kb on + strand, within GFF668at 745.012 kb on + strand, within GFF668at 745.052 kb on + strand, within GFF668at 745.052 kb on + strand, within GFF668at 745.058 kb on + strand, within GFF668at 745.096 kb on + strand, within GFF668at 745.096 kb on + strand, within GFF668at 745.230 kb on + strand, within GFF668at 745.242 kb on + strand, within GFF668at 745.243 kb on - strand, within GFF668at 745.335 kb on + strand, within GFF668at 745.427 kb on + strandat 745.427 kb on + strandat 745.427 kb on + strandat 745.427 kb on + strandat 745.429 kb on + strandat 745.440 kb on + strandat 745.440 kb on + strandat 745.440 kb on + strandat 745.441 kb on - strandat 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.525 kb on - strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.542 kb on + strand, within GFF669at 745.542 kb on + strand, within GFF669at 745.552 kb on + strand, within GFF669at 745.552 kb on + strand, within GFF669at 745.606 kb on + strand, within GFF669at 745.606 kb on + strand, within GFF669at 745.650 kb on + strand, within GFF669at 745.826 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.945 kb on + strand, within GFF669at 745.971 kb on + strand, within GFF669at 746.031 kb on + strand, within GFF669at 746.142 kb on + strandat 746.142 kb on + strandat 746.142 kb on + strandat 746.170 kb on + strandat 746.170 kb on + strandat 746.170 kb on + strandat 746.172 kb on + strandat 746.190 kb on + strandat 746.247 kb on + strand, within GFF670at 746.247 kb on + strand, within GFF670at 746.247 kb on + strand, within GFF670at 746.248 kb on - strand, within GFF670at 746.298 kb on + strand, within GFF670at 746.509 kb on + strandat 746.568 kb on + strandat 746.591 kb on + strandat 746.647 kb on + strand, within GFF671at 746.758 kb on + strand, within GFF671at 746.798 kb on + strand, within GFF671at 746.812 kb on + strand, within GFF671at 746.875 kb on + strand, within GFF671

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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744,450 + -0.2
744,461 + -1.0
744,461 + -0.2
744,489 + -1.3
744,495 + -1.2
744,497 + -1.2
744,497 + +1.1
744,497 + +0.1
744,497 + +0.1
744,497 + +0.8
744,497 + -0.9
744,497 + -0.3
744,497 + -0.7
744,546 + -1.7
744,574 - -0.9
744,668 + GFF668 0.19 +0.7
744,817 + GFF668 0.35 -1.7
744,817 + GFF668 0.35 +0.5
744,817 + GFF668 0.35 +0.7
744,822 + GFF668 0.35 -0.3
744,822 + GFF668 0.35 -1.7
744,822 + GFF668 0.35 +1.1
744,883 + GFF668 0.42 -0.9
744,883 + GFF668 0.42 -1.2
744,934 + GFF668 0.47 -1.2
744,934 + GFF668 0.47 +0.7
745,012 + GFF668 0.55 -1.2
745,052 + GFF668 0.60 +0.1
745,052 + GFF668 0.60 -0.9
745,058 + GFF668 0.60 -1.5
745,096 + GFF668 0.64 -0.9
745,096 + GFF668 0.64 +0.7
745,230 + GFF668 0.79 +0.7
745,242 + GFF668 0.80 -0.2
745,243 - GFF668 0.80 -1.5
745,335 + GFF668 0.90 -0.9
745,427 + +0.3
745,427 + +0.5
745,427 + -0.9
745,427 + +0.8
745,429 + -0.7
745,440 + +0.5
745,440 + -0.2
745,440 + +0.1
745,441 - -1.9
745,524 + GFF669 0.11 +0.1
745,524 + GFF669 0.11 -0.9
745,524 + GFF669 0.11 +1.1
745,524 + GFF669 0.11 -0.9
745,524 + GFF669 0.11 +1.1
745,524 + GFF669 0.11 -0.5
745,524 + GFF669 0.11 -1.2
745,524 + GFF669 0.11 +0.1
745,525 - GFF669 0.11 -0.9
745,528 + GFF669 0.11 +0.1
745,528 + GFF669 0.11 -1.5
745,528 + GFF669 0.11 +1.1
745,528 + GFF669 0.11 -0.0
745,528 + GFF669 0.11 -0.3
745,542 + GFF669 0.13 -1.2
745,542 + GFF669 0.13 -0.6
745,552 + GFF669 0.15 -1.2
745,552 + GFF669 0.15 +0.9
745,606 + GFF669 0.22 -1.2
745,606 + GFF669 0.22 -0.7
745,650 + GFF669 0.27 -0.1
745,826 + GFF669 0.51 -0.9
745,834 + GFF669 0.52 -2.1
745,834 + GFF669 0.52 -1.7
745,834 + GFF669 0.52 -1.9
745,945 + GFF669 0.66 -0.9
745,971 + GFF669 0.70 -0.9
746,031 + GFF669 0.77 -1.5
746,142 + -1.0
746,142 + -1.2
746,142 + -0.5
746,170 + -1.3
746,170 + -0.2
746,170 + -0.5
746,172 + -0.6
746,190 + -0.7
746,247 + GFF670 0.11 +0.4
746,247 + GFF670 0.11 +0.3
746,247 + GFF670 0.11 +0.1
746,248 - GFF670 0.11 -0.9
746,298 + GFF670 0.28 -0.3
746,509 + +0.1
746,568 + +0.7
746,591 + +0.4
746,647 + GFF671 0.11 +1.4
746,758 + GFF671 0.20 -0.7
746,798 + GFF671 0.24 -0.9
746,812 + GFF671 0.25 +0.1
746,875 + GFF671 0.30 -0.3

Or see this region's nucleotide sequence