Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF570 and GFF571 are separated by 23 nucleotides GFF571 and GFF572 overlap by 4 nucleotides
GFF570 - hypothetical protein, at 625,218 to 626,156
GFF570
GFF571 - hypothetical protein, at 626,180 to 627,226
GFF571
GFF572 - hypothetical protein, at 627,223 to 628,593
GFF572
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.258 kb on - strand at 625.402 kb on - strand, within GFF570 at 625.865 kb on - strand, within GFF570 at 626.030 kb on + strand, within GFF570 at 626.157 kb on - strand at 626.157 kb on - strand at 626.167 kb on + strand at 626.168 kb on - strand at 626.168 kb on - strand at 626.168 kb on - strand at 626.168 kb on - strand at 626.170 kb on + strand at 626.170 kb on + strand at 626.170 kb on + strand at 626.171 kb on - strand at 626.171 kb on - strand at 626.174 kb on + strand at 626.174 kb on + strand at 626.174 kb on + strand at 626.175 kb on - strand at 626.181 kb on + strand at 626.185 kb on + strand at 626.206 kb on + strand at 626.207 kb on - strand at 626.207 kb on - strand at 626.207 kb on - strand at 626.228 kb on - strand at 626.229 kb on + strand at 626.230 kb on - strand at 626.230 kb on - strand at 626.232 kb on - strand at 626.232 kb on - strand at 626.232 kb on - strand at 626.271 kb on - strand at 626.271 kb on - strand at 626.326 kb on - strand, within GFF571 at 626.327 kb on + strand, within GFF571 at 626.327 kb on + strand, within GFF571 at 626.328 kb on - strand, within GFF571 at 626.328 kb on - strand, within GFF571 at 626.328 kb on - strand, within GFF571 at 626.334 kb on - strand, within GFF571 at 626.346 kb on - strand, within GFF571 at 626.369 kb on - strand, within GFF571 at 626.380 kb on - strand, within GFF571 at 626.380 kb on - strand, within GFF571 at 626.394 kb on - strand, within GFF571 at 626.394 kb on - strand, within GFF571 at 626.394 kb on - strand, within GFF571 at 626.394 kb on - strand, within GFF571 at 626.395 kb on + strand, within GFF571 at 626.424 kb on - strand, within GFF571 at 626.424 kb on - strand, within GFF571 at 626.459 kb on - strand, within GFF571 at 626.459 kb on - strand, within GFF571 at 626.477 kb on - strand, within GFF571 at 626.485 kb on + strand, within GFF571 at 626.485 kb on + strand, within GFF571 at 626.491 kb on + strand, within GFF571 at 626.492 kb on - strand, within GFF571 at 626.492 kb on - strand, within GFF571 at 626.510 kb on - strand, within GFF571 at 626.510 kb on - strand, within GFF571 at 626.514 kb on + strand, within GFF571 at 626.514 kb on + strand, within GFF571 at 626.514 kb on + strand, within GFF571 at 626.556 kb on - strand, within GFF571 at 626.562 kb on + strand, within GFF571 at 626.563 kb on - strand, within GFF571 at 626.563 kb on - strand, within GFF571 at 626.563 kb on - strand, within GFF571 at 626.598 kb on + strand, within GFF571 at 626.599 kb on - strand, within GFF571 at 626.599 kb on - strand, within GFF571 at 626.653 kb on - strand, within GFF571 at 626.653 kb on - strand, within GFF571 at 626.653 kb on - strand, within GFF571 at 626.664 kb on - strand, within GFF571 at 626.672 kb on - strand, within GFF571 at 626.675 kb on - strand, within GFF571 at 626.678 kb on - strand, within GFF571 at 626.714 kb on - strand, within GFF571 at 626.735 kb on - strand, within GFF571 at 626.761 kb on - strand, within GFF571 at 626.761 kb on - strand, within GFF571 at 626.764 kb on + strand, within GFF571 at 626.765 kb on - strand, within GFF571 at 626.765 kb on - strand, within GFF571 at 626.803 kb on - strand, within GFF571 at 626.847 kb on + strand, within GFF571 at 626.856 kb on - strand, within GFF571 at 626.860 kb on - strand, within GFF571 at 626.900 kb on + strand, within GFF571 at 626.904 kb on - strand, within GFF571 at 626.959 kb on - strand, within GFF571 at 626.999 kb on - strand, within GFF571 at 627.029 kb on - strand, within GFF571 at 627.029 kb on - strand, within GFF571 at 627.030 kb on + strand, within GFF571 at 627.031 kb on - strand, within GFF571 at 627.031 kb on - strand, within GFF571 at 627.031 kb on - strand, within GFF571 at 627.031 kb on - strand, within GFF571 at 627.042 kb on - strand, within GFF571 at 627.047 kb on - strand, within GFF571 at 627.066 kb on - strand, within GFF571 at 627.066 kb on - strand, within GFF571 at 627.066 kb on - strand, within GFF571 at 627.066 kb on - strand, within GFF571 at 627.066 kb on - strand, within GFF571 at 627.069 kb on - strand, within GFF571 at 627.069 kb on - strand, within GFF571 at 627.069 kb on - strand, within GFF571 at 627.069 kb on - strand, within GFF571 at 627.069 kb on - strand, within GFF571 at 627.080 kb on - strand, within GFF571 at 627.080 kb on - strand, within GFF571 at 627.098 kb on - strand, within GFF571 at 627.150 kb on - strand at 627.165 kb on - strand at 627.190 kb on - strand at 627.213 kb on - strand at 627.226 kb on + strand at 627.227 kb on - strand at 627.227 kb on - strand at 627.233 kb on - strand at 627.235 kb on + strand at 627.236 kb on - strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.237 kb on + strand at 627.238 kb on - strand at 627.238 kb on - strand at 627.238 kb on - strand at 627.238 kb on - strand at 627.238 kb on - strand at 627.238 kb on - strand at 627.271 kb on - strand at 627.284 kb on - strand at 627.284 kb on - strand at 627.288 kb on + strand at 627.289 kb on - strand at 627.289 kb on - strand at 627.302 kb on + strand at 627.302 kb on + strand at 627.303 kb on - strand at 627.303 kb on - strand at 627.303 kb on - strand at 627.303 kb on - strand at 627.307 kb on + strand at 627.308 kb on - strand at 627.312 kb on + strand at 627.313 kb on - strand at 627.313 kb on - strand at 627.341 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.351 kb on - strand at 627.353 kb on - strand at 627.353 kb on - strand at 627.353 kb on - strand at 627.355 kb on - strand at 627.355 kb on - strand at 627.355 kb on - strand at 627.371 kb on - strand, within GFF572 at 627.372 kb on + strand, within GFF572 at 627.373 kb on - strand, within GFF572 at 627.373 kb on - strand, within GFF572 at 627.373 kb on - strand, within GFF572 at 627.377 kb on - strand, within GFF572 at 627.377 kb on - strand, within GFF572 at 627.383 kb on - strand, within GFF572 at 627.389 kb on - strand, within GFF572 at 627.398 kb on - strand, within GFF572 at 627.398 kb on - strand, within GFF572 at 627.398 kb on - strand, within GFF572 at 627.398 kb on - strand, within GFF572 at 627.401 kb on - strand, within GFF572 at 627.444 kb on - strand, within GFF572 at 627.447 kb on - strand, within GFF572 at 627.447 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.460 kb on - strand, within GFF572 at 627.464 kb on - strand, within GFF572 at 627.593 kb on + strand, within GFF572 at 627.596 kb on - strand, within GFF572 at 627.667 kb on - strand, within GFF572 at 627.671 kb on - strand, within GFF572 at 627.671 kb on - strand, within GFF572 at 627.671 kb on - strand, within GFF572 at 627.709 kb on - strand, within GFF572 at 627.709 kb on - strand, within GFF572 at 627.725 kb on - strand, within GFF572 at 627.755 kb on - strand, within GFF572 at 627.779 kb on - strand, within GFF572 at 627.790 kb on - strand, within GFF572 at 627.794 kb on - strand, within GFF572 at 627.803 kb on - strand, within GFF572 at 627.805 kb on - strand, within GFF572 at 627.809 kb on + strand, within GFF572 at 627.810 kb on - strand, within GFF572 at 627.898 kb on - strand, within GFF572 at 627.932 kb on + strand, within GFF572 at 627.933 kb on - strand, within GFF572 at 627.936 kb on + strand, within GFF572 at 627.937 kb on - strand, within GFF572 at 627.937 kb on - strand, within GFF572 at 627.962 kb on - strand, within GFF572 at 627.977 kb on - strand, within GFF572 at 627.986 kb on - strand, within GFF572 at 628.028 kb on - strand, within GFF572 at 628.028 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.040 kb on - strand, within GFF572 at 628.061 kb on - strand, within GFF572 at 628.097 kb on - strand, within GFF572 at 628.117 kb on - strand, within GFF572 at 628.117 kb on - strand, within GFF572 at 628.117 kb on - strand, within GFF572 at 628.129 kb on - strand, within GFF572 at 628.129 kb on - strand, within GFF572 at 628.129 kb on - strand, within GFF572 at 628.129 kb on - strand, within GFF572 at 628.138 kb on - strand, within GFF572 at 628.138 kb on - strand, within GFF572 at 628.138 kb on - strand, within GFF572 at 628.138 kb on - strand, within GFF572 at 628.144 kb on - strand, within GFF572 at 628.144 kb on - strand, within GFF572 at 628.144 kb on - strand, within GFF572 at 628.144 kb on - strand, within GFF572 at 628.148 kb on - strand, within GFF572 at 628.148 kb on - strand, within GFF572 at 628.148 kb on - strand, within GFF572 at 628.148 kb on - strand, within GFF572 at 628.148 kb on - strand, within GFF572 at 628.153 kb on - strand, within GFF572 at 628.166 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.172 kb on - strand, within GFF572 at 628.190 kb on + strand, within GFF572 at 628.191 kb on - strand, within GFF572 at 628.191 kb on - strand, within GFF572 at 628.191 kb on - strand, within GFF572
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 625,258 - -1.5 625,402 - GFF570 0.20 -0.9 625,865 - GFF570 0.69 -0.9 626,030 + GFF570 0.86 -1.2 626,157 - -1.0 626,157 - +0.1 626,167 + -0.0 626,168 - -1.4 626,168 - -1.2 626,168 - +0.1 626,168 - -1.6 626,170 + -1.5 626,170 + -1.1 626,170 + -0.9 626,171 - -1.8 626,171 - -0.7 626,174 + -0.1 626,174 + +0.8 626,174 + -0.2 626,175 - -0.9 626,181 + -0.9 626,185 + -0.9 626,206 + -1.3 626,207 - +1.1 626,207 - -2.2 626,207 - -0.7 626,228 - -0.3 626,229 + -2.3 626,230 - -0.9 626,230 - -0.9 626,232 - +1.1 626,232 - +0.1 626,232 - +0.1 626,271 - +0.9 626,271 - -1.2 626,326 - GFF571 0.14 -0.5 626,327 + GFF571 0.14 -1.5 626,327 + GFF571 0.14 -1.2 626,328 - GFF571 0.14 -1.4 626,328 - GFF571 0.14 -0.9 626,328 - GFF571 0.14 +0.8 626,334 - GFF571 0.15 +0.4 626,346 - GFF571 0.16 -0.5 626,369 - GFF571 0.18 -0.9 626,380 - GFF571 0.19 -1.7 626,380 - GFF571 0.19 -1.5 626,394 - GFF571 0.20 -1.7 626,394 - GFF571 0.20 -1.0 626,394 - GFF571 0.20 -1.7 626,394 - GFF571 0.20 +0.1 626,395 + GFF571 0.21 -0.9 626,424 - GFF571 0.23 -2.0 626,424 - GFF571 0.23 -0.9 626,459 - GFF571 0.27 +0.4 626,459 - GFF571 0.27 -1.7 626,477 - GFF571 0.28 -1.5 626,485 + GFF571 0.29 -3.1 626,485 + GFF571 0.29 -0.9 626,491 + GFF571 0.30 -0.9 626,492 - GFF571 0.30 -0.7 626,492 - GFF571 0.30 -1.5 626,510 - GFF571 0.32 -0.8 626,510 - GFF571 0.32 -1.1 626,514 + GFF571 0.32 -1.8 626,514 + GFF571 0.32 -1.7 626,514 + GFF571 0.32 -1.2 626,556 - GFF571 0.36 -0.9 626,562 + GFF571 0.36 -0.9 626,563 - GFF571 0.37 -1.7 626,563 - GFF571 0.37 +0.1 626,563 - GFF571 0.37 -1.2 626,598 + GFF571 0.40 +0.1 626,599 - GFF571 0.40 -0.2 626,599 - GFF571 0.40 +0.7 626,653 - GFF571 0.45 -1.9 626,653 - GFF571 0.45 -0.8 626,653 - GFF571 0.45 -1.9 626,664 - GFF571 0.46 -0.1 626,672 - GFF571 0.47 -1.9 626,675 - GFF571 0.47 -0.2 626,678 - GFF571 0.48 -1.5 626,714 - GFF571 0.51 +0.1 626,735 - GFF571 0.53 +1.6 626,761 - GFF571 0.55 +0.1 626,761 - GFF571 0.55 -0.1 626,764 + GFF571 0.56 -1.5 626,765 - GFF571 0.56 +0.1 626,765 - GFF571 0.56 -0.9 626,803 - GFF571 0.60 -1.2 626,847 + GFF571 0.64 -1.2 626,856 - GFF571 0.65 -1.2 626,860 - GFF571 0.65 +0.4 626,900 + GFF571 0.69 -0.9 626,904 - GFF571 0.69 -1.2 626,959 - GFF571 0.74 -0.2 626,999 - GFF571 0.78 +0.1 627,029 - GFF571 0.81 -0.8 627,029 - GFF571 0.81 -1.2 627,030 + GFF571 0.81 -1.2 627,031 - GFF571 0.81 -1.0 627,031 - GFF571 0.81 -0.8 627,031 - GFF571 0.81 +0.1 627,031 - GFF571 0.81 -0.9 627,042 - GFF571 0.82 -1.2 627,047 - GFF571 0.83 -2.4 627,066 - GFF571 0.85 +0.7 627,066 - GFF571 0.85 +0.4 627,066 - GFF571 0.85 +0.3 627,066 - GFF571 0.85 -0.9 627,066 - GFF571 0.85 -0.9 627,069 - GFF571 0.85 -1.0 627,069 - GFF571 0.85 -1.4 627,069 - GFF571 0.85 -0.5 627,069 - GFF571 0.85 -1.5 627,069 - GFF571 0.85 +0.1 627,080 - GFF571 0.86 +0.8 627,080 - GFF571 0.86 -1.7 627,098 - GFF571 0.88 -0.9 627,150 - -1.2 627,165 - -1.2 627,190 - -0.9 627,213 - +0.5 627,226 + -1.7 627,227 - -1.2 627,227 - -0.3 627,233 - -0.4 627,235 + -0.9 627,236 - -0.3 627,237 + -0.6 627,237 + +0.4 627,237 + +0.3 627,237 + -0.5 627,237 + -0.1 627,237 + +0.1 627,237 + +0.1 627,238 - +0.7 627,238 - -1.0 627,238 - +0.2 627,238 - +0.3 627,238 - -0.9 627,238 - -1.2 627,271 - -0.5 627,284 - -0.9 627,284 - -0.3 627,288 + -0.9 627,289 - +0.4 627,289 - -1.9 627,302 + -2.4 627,302 + -1.4 627,303 - -1.2 627,303 - -0.5 627,303 - +0.1 627,303 - -0.9 627,307 + -1.5 627,308 - -0.4 627,312 + +0.1 627,313 - -1.0 627,313 - -0.7 627,341 - +0.8 627,351 - +0.1 627,351 - -1.5 627,351 - -1.9 627,351 - -1.4 627,351 - -1.4 627,351 - -0.4 627,351 - +0.1 627,351 - -0.5 627,351 - -0.2 627,351 - -1.0 627,351 - -1.5 627,351 - -1.4 627,351 - -1.1 627,353 - -2.1 627,353 - -0.8 627,353 - +0.1 627,355 - -0.9 627,355 - -0.3 627,355 - -3.1 627,371 - GFF572 0.11 +0.5 627,372 + GFF572 0.11 -0.9 627,373 - GFF572 0.11 -1.3 627,373 - GFF572 0.11 -0.2 627,373 - GFF572 0.11 -0.5 627,377 - GFF572 0.11 -1.5 627,377 - GFF572 0.11 -0.2 627,383 - GFF572 0.12 -0.9 627,389 - GFF572 0.12 -0.5 627,398 - GFF572 0.13 +0.1 627,398 - GFF572 0.13 -0.8 627,398 - GFF572 0.13 -0.4 627,398 - GFF572 0.13 -2.7 627,401 - GFF572 0.13 -0.7 627,444 - GFF572 0.16 -1.2 627,447 - GFF572 0.16 -0.6 627,447 - GFF572 0.16 -2.6 627,460 - GFF572 0.17 -0.9 627,460 - GFF572 0.17 +0.7 627,460 - GFF572 0.17 +0.2 627,460 - GFF572 0.17 -0.3 627,460 - GFF572 0.17 -1.5 627,460 - GFF572 0.17 +0.5 627,464 - GFF572 0.18 -1.5 627,593 + GFF572 0.27 +0.5 627,596 - GFF572 0.27 -0.7 627,667 - GFF572 0.32 -0.8 627,671 - GFF572 0.33 +0.1 627,671 - GFF572 0.33 -1.6 627,671 - GFF572 0.33 -1.5 627,709 - GFF572 0.35 -1.6 627,709 - GFF572 0.35 -0.1 627,725 - GFF572 0.37 +0.9 627,755 - GFF572 0.39 -1.1 627,779 - GFF572 0.41 -1.4 627,790 - GFF572 0.41 -1.3 627,794 - GFF572 0.42 -0.5 627,803 - GFF572 0.42 -0.9 627,805 - GFF572 0.42 +0.5 627,809 + GFF572 0.43 +0.3 627,810 - GFF572 0.43 -1.0 627,898 - GFF572 0.49 -0.5 627,932 + GFF572 0.52 -1.7 627,933 - GFF572 0.52 -0.9 627,936 + GFF572 0.52 -0.9 627,937 - GFF572 0.52 +0.5 627,937 - GFF572 0.52 -1.5 627,962 - GFF572 0.54 -1.4 627,977 - GFF572 0.55 -0.7 627,986 - GFF572 0.56 +0.4 628,028 - GFF572 0.59 -2.7 628,028 - GFF572 0.59 -0.7 628,040 - GFF572 0.60 -2.1 628,040 - GFF572 0.60 -0.5 628,040 - GFF572 0.60 -0.5 628,040 - GFF572 0.60 -2.0 628,040 - GFF572 0.60 -0.3 628,040 - GFF572 0.60 +0.8 628,040 - GFF572 0.60 -0.7 628,061 - GFF572 0.61 -1.5 628,097 - GFF572 0.64 -1.5 628,117 - GFF572 0.65 +1.7 628,117 - GFF572 0.65 -0.3 628,117 - GFF572 0.65 -1.0 628,129 - GFF572 0.66 -1.3 628,129 - GFF572 0.66 -0.0 628,129 - GFF572 0.66 -0.8 628,129 - GFF572 0.66 +0.1 628,138 - GFF572 0.67 -2.2 628,138 - GFF572 0.67 -2.4 628,138 - GFF572 0.67 -1.7 628,138 - GFF572 0.67 -1.2 628,144 - GFF572 0.67 -1.1 628,144 - GFF572 0.67 -1.0 628,144 - GFF572 0.67 -0.1 628,144 - GFF572 0.67 -0.2 628,148 - GFF572 0.67 -0.8 628,148 - GFF572 0.67 -0.3 628,148 - GFF572 0.67 -0.9 628,148 - GFF572 0.67 -0.6 628,148 - GFF572 0.67 +0.1 628,153 - GFF572 0.68 -1.4 628,166 - GFF572 0.69 -0.5 628,172 - GFF572 0.69 -1.1 628,172 - GFF572 0.69 -0.7 628,172 - GFF572 0.69 -1.1 628,172 - GFF572 0.69 -0.9 628,172 - GFF572 0.69 +0.1 628,172 - GFF572 0.69 -0.9 628,190 + GFF572 0.71 -1.2 628,191 - GFF572 0.71 -0.7 628,191 - GFF572 0.71 -2.1 628,191 - GFF572 0.71 -1.9
Or see this region's nucleotide sequence