Strain Fitness in Methylophilus sp. DMC18 around GFF453

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF451 and GFF452 overlap by 4 nucleotidesGFF452 and GFF453 are separated by 25 nucleotidesGFF453 and GFF454 overlap by 4 nucleotidesGFF454 and GFF455 are separated by 15 nucleotides GFF451 - hypothetical protein, at 491,186 to 491,548 GFF451 GFF452 - hypothetical protein, at 491,545 to 492,285 GFF452 GFF453 - NAD(P)H dehydrogenase (quinone), at 492,311 to 492,901 GFF453 GFF454 - hypothetical protein, at 492,898 to 493,719 GFF454 GFF455 - hypothetical protein, at 493,735 to 497,124 GFF455 Position (kb) 492 493Strain fitness (log2 ratio) -2 -1 0 1at 491.332 kb on - strand, within GFF451at 491.332 kb on - strand, within GFF451at 491.332 kb on - strand, within GFF451at 491.362 kb on - strand, within GFF451at 491.362 kb on - strand, within GFF451at 491.366 kb on - strand, within GFF451at 491.366 kb on - strand, within GFF451at 491.366 kb on - strand, within GFF451at 491.366 kb on - strand, within GFF451at 491.483 kb on + strand, within GFF451at 491.483 kb on + strand, within GFF451at 491.483 kb on + strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.484 kb on - strand, within GFF451at 491.633 kb on - strand, within GFF452at 491.661 kb on - strand, within GFF452at 491.693 kb on - strand, within GFF452at 491.739 kb on - strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.876 kb on + strand, within GFF452at 491.904 kb on - strand, within GFF452at 491.922 kb on + strand, within GFF452at 491.923 kb on - strand, within GFF452at 491.930 kb on + strand, within GFF452at 491.930 kb on + strand, within GFF452at 491.930 kb on + strand, within GFF452at 491.931 kb on - strand, within GFF452at 491.931 kb on - strand, within GFF452at 491.951 kb on + strand, within GFF452at 491.961 kb on - strand, within GFF452at 491.961 kb on - strand, within GFF452at 492.064 kb on + strand, within GFF452at 492.064 kb on + strand, within GFF452at 492.065 kb on - strand, within GFF452at 492.090 kb on + strand, within GFF452at 492.099 kb on + strand, within GFF452at 492.099 kb on + strand, within GFF452at 492.189 kb on - strand, within GFF452at 492.261 kb on - strandat 492.285 kb on + strandat 492.286 kb on - strandat 492.286 kb on - strandat 492.286 kb on - strandat 492.286 kb on - strandat 492.290 kb on - strandat 492.290 kb on - strandat 492.362 kb on + strandat 492.363 kb on - strandat 492.363 kb on - strandat 492.445 kb on + strand, within GFF453at 492.445 kb on + strand, within GFF453at 492.446 kb on - strand, within GFF453at 492.446 kb on - strand, within GFF453at 492.488 kb on + strand, within GFF453at 492.489 kb on - strand, within GFF453at 492.489 kb on - strand, within GFF453at 492.637 kb on - strand, within GFF453at 492.655 kb on + strand, within GFF453at 492.680 kb on + strand, within GFF453at 492.723 kb on + strand, within GFF453at 492.723 kb on + strand, within GFF453at 492.724 kb on - strand, within GFF453at 492.724 kb on - strand, within GFF453at 492.824 kb on + strand, within GFF453at 492.824 kb on - strand, within GFF453at 492.880 kb on - strandat 492.986 kb on + strand, within GFF454at 492.986 kb on + strand, within GFF454at 492.986 kb on + strand, within GFF454at 492.986 kb on + strand, within GFF454at 492.992 kb on + strand, within GFF454at 492.993 kb on - strand, within GFF454at 492.993 kb on - strand, within GFF454at 493.016 kb on + strand, within GFF454at 493.016 kb on + strand, within GFF454at 493.023 kb on + strand, within GFF454at 493.024 kb on - strand, within GFF454at 493.029 kb on + strand, within GFF454at 493.029 kb on + strand, within GFF454at 493.030 kb on - strand, within GFF454at 493.030 kb on - strand, within GFF454at 493.030 kb on - strand, within GFF454at 493.084 kb on + strand, within GFF454at 493.085 kb on - strand, within GFF454at 493.160 kb on - strand, within GFF454at 493.160 kb on - strand, within GFF454at 493.203 kb on + strand, within GFF454at 493.204 kb on - strand, within GFF454at 493.204 kb on - strand, within GFF454at 493.204 kb on - strand, within GFF454at 493.347 kb on + strand, within GFF454at 493.349 kb on + strand, within GFF454at 493.350 kb on - strand, within GFF454at 493.350 kb on - strand, within GFF454at 493.350 kb on - strand, within GFF454at 493.350 kb on - strand, within GFF454at 493.350 kb on - strand, within GFF454at 493.351 kb on + strand, within GFF454at 493.352 kb on - strand, within GFF454at 493.442 kb on + strand, within GFF454at 493.442 kb on + strand, within GFF454at 493.443 kb on - strand, within GFF454at 493.443 kb on - strand, within GFF454at 493.447 kb on + strand, within GFF454at 493.447 kb on + strand, within GFF454at 493.448 kb on - strand, within GFF454at 493.448 kb on - strand, within GFF454at 493.448 kb on - strand, within GFF454at 493.448 kb on - strand, within GFF454at 493.464 kb on + strand, within GFF454at 493.464 kb on + strand, within GFF454at 493.465 kb on - strand, within GFF454at 493.465 kb on - strand, within GFF454at 493.467 kb on + strand, within GFF454at 493.468 kb on - strand, within GFF454at 493.468 kb on - strand, within GFF454at 493.491 kb on + strand, within GFF454at 493.508 kb on + strand, within GFF454at 493.509 kb on - strand, within GFF454at 493.509 kb on - strand, within GFF454at 493.561 kb on + strand, within GFF454at 493.561 kb on + strand, within GFF454at 493.561 kb on + strand, within GFF454at 493.561 kb on + strand, within GFF454at 493.586 kb on + strand, within GFF454at 493.587 kb on - strand, within GFF454at 493.587 kb on - strand, within GFF454at 493.587 kb on - strand, within GFF454at 493.708 kb on - strandat 493.713 kb on + strandat 493.713 kb on + strandat 493.713 kb on + strandat 493.713 kb on + strandat 493.714 kb on - strandat 493.714 kb on - strandat 493.714 kb on - strandat 493.714 kb on - strandat 493.714 kb on - strandat 493.747 kb on - strandat 493.747 kb on - strandat 493.747 kb on - strandat 493.754 kb on + strandat 493.755 kb on - strandat 493.755 kb on - strandat 493.820 kb on + strandat 493.821 kb on - strandat 493.821 kb on - strandat 493.821 kb on - strandat 493.821 kb on - strandat 493.821 kb on - strandat 493.830 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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491,332 - GFF451 0.40 -1.0
491,332 - GFF451 0.40 +0.1
491,332 - GFF451 0.40 -1.2
491,362 - GFF451 0.48 -0.9
491,362 - GFF451 0.48 -0.7
491,366 - GFF451 0.50 +1.1
491,366 - GFF451 0.50 -0.1
491,366 - GFF451 0.50 -0.9
491,366 - GFF451 0.50 -0.5
491,483 + GFF451 0.82 -0.9
491,483 + GFF451 0.82 -1.2
491,483 + GFF451 0.82 -1.7
491,484 - GFF451 0.82 -0.5
491,484 - GFF451 0.82 -1.2
491,484 - GFF451 0.82 -1.1
491,484 - GFF451 0.82 +0.5
491,484 - GFF451 0.82 -0.6
491,484 - GFF451 0.82 -1.6
491,484 - GFF451 0.82 -1.1
491,484 - GFF451 0.82 -2.1
491,484 - GFF451 0.82 -0.1
491,484 - GFF451 0.82 -1.5
491,484 - GFF451 0.82 +0.1
491,484 - GFF451 0.82 -0.6
491,484 - GFF451 0.82 -1.9
491,633 - GFF452 0.12 -0.5
491,661 - GFF452 0.16 -0.5
491,693 - GFF452 0.20 +0.0
491,739 - GFF452 0.26 +0.1
491,772 + GFF452 0.31 +0.1
491,772 + GFF452 0.31 +0.0
491,876 + GFF452 0.45 -0.2
491,904 - GFF452 0.48 -0.9
491,922 + GFF452 0.51 -0.7
491,923 - GFF452 0.51 +0.4
491,930 + GFF452 0.52 +0.6
491,930 + GFF452 0.52 -0.1
491,930 + GFF452 0.52 -1.1
491,931 - GFF452 0.52 -1.1
491,931 - GFF452 0.52 -0.7
491,951 + GFF452 0.55 +0.7
491,961 - GFF452 0.56 +0.8
491,961 - GFF452 0.56 -0.9
492,064 + GFF452 0.70 +0.1
492,064 + GFF452 0.70 -0.2
492,065 - GFF452 0.70 -0.1
492,090 + GFF452 0.74 -0.5
492,099 + GFF452 0.75 +0.1
492,099 + GFF452 0.75 -0.5
492,189 - GFF452 0.87 -0.2
492,261 - -0.2
492,285 + -1.7
492,286 - -1.2
492,286 - -0.7
492,286 - -0.7
492,286 - -1.8
492,290 - -1.8
492,290 - +0.8
492,362 + -1.4
492,363 - +1.6
492,363 - +0.9
492,445 + GFF453 0.23 -0.8
492,445 + GFF453 0.23 +0.5
492,446 - GFF453 0.23 -1.3
492,446 - GFF453 0.23 -1.9
492,488 + GFF453 0.30 -1.7
492,489 - GFF453 0.30 -0.1
492,489 - GFF453 0.30 -0.7
492,637 - GFF453 0.55 -0.7
492,655 + GFF453 0.58 +0.1
492,680 + GFF453 0.62 -0.9
492,723 + GFF453 0.70 +0.1
492,723 + GFF453 0.70 -0.9
492,724 - GFF453 0.70 -1.2
492,724 - GFF453 0.70 -0.5
492,824 + GFF453 0.87 -2.1
492,824 - GFF453 0.87 -1.4
492,880 - -1.2
492,986 + GFF454 0.11 -0.6
492,986 + GFF454 0.11 -0.7
492,986 + GFF454 0.11 +0.1
492,986 + GFF454 0.11 -0.7
492,992 + GFF454 0.11 +0.1
492,993 - GFF454 0.12 -1.2
492,993 - GFF454 0.12 -0.4
493,016 + GFF454 0.14 -0.2
493,016 + GFF454 0.14 -0.1
493,023 + GFF454 0.15 -2.4
493,024 - GFF454 0.15 -0.2
493,029 + GFF454 0.16 +0.3
493,029 + GFF454 0.16 -0.1
493,030 - GFF454 0.16 +0.7
493,030 - GFF454 0.16 -2.2
493,030 - GFF454 0.16 +0.6
493,084 + GFF454 0.23 +0.3
493,085 - GFF454 0.23 -0.6
493,160 - GFF454 0.32 -1.2
493,160 - GFF454 0.32 -0.9
493,203 + GFF454 0.37 -0.4
493,204 - GFF454 0.37 -1.2
493,204 - GFF454 0.37 -0.3
493,204 - GFF454 0.37 +0.1
493,347 + GFF454 0.55 -0.5
493,349 + GFF454 0.55 -2.1
493,350 - GFF454 0.55 -0.9
493,350 - GFF454 0.55 -0.6
493,350 - GFF454 0.55 +0.4
493,350 - GFF454 0.55 +0.4
493,350 - GFF454 0.55 +0.7
493,351 + GFF454 0.55 -0.2
493,352 - GFF454 0.55 -0.7
493,442 + GFF454 0.66 -1.4
493,442 + GFF454 0.66 -0.7
493,443 - GFF454 0.66 -0.4
493,443 - GFF454 0.66 -0.2
493,447 + GFF454 0.67 -0.3
493,447 + GFF454 0.67 -0.8
493,448 - GFF454 0.67 -1.1
493,448 - GFF454 0.67 +0.4
493,448 - GFF454 0.67 -0.8
493,448 - GFF454 0.67 -0.8
493,464 + GFF454 0.69 -0.2
493,464 + GFF454 0.69 -1.1
493,465 - GFF454 0.69 -0.4
493,465 - GFF454 0.69 -0.7
493,467 + GFF454 0.69 -0.2
493,468 - GFF454 0.69 -0.3
493,468 - GFF454 0.69 -0.2
493,491 + GFF454 0.72 -1.1
493,508 + GFF454 0.74 -0.9
493,509 - GFF454 0.74 -1.2
493,509 - GFF454 0.74 +0.0
493,561 + GFF454 0.81 -1.2
493,561 + GFF454 0.81 -0.1
493,561 + GFF454 0.81 -0.3
493,561 + GFF454 0.81 -1.2
493,586 + GFF454 0.84 +0.3
493,587 - GFF454 0.84 -0.7
493,587 - GFF454 0.84 -0.1
493,587 - GFF454 0.84 -0.9
493,708 - +0.7
493,713 + -0.4
493,713 + -1.5
493,713 + +0.8
493,713 + -1.2
493,714 - -1.1
493,714 - +0.3
493,714 - -0.1
493,714 - -0.5
493,714 - -0.8
493,747 - -0.4
493,747 - +1.1
493,747 - -0.4
493,754 + +0.1
493,755 - -1.1
493,755 - -0.9
493,820 + -0.6
493,821 - +1.1
493,821 - -0.9
493,821 - -1.2
493,821 - -0.6
493,821 - -0.9
493,830 + -1.8

Or see this region's nucleotide sequence