Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2822 and GFF2823 are separated by 148 nucleotides GFF2823 and GFF2824 are separated by 24 nucleotides GFF2824 and GFF2825 are separated by 4 nucleotides GFF2825 and GFF2826 are separated by 125 nucleotides
GFF2822 - Multidrug resistance protein MexB, at 54,367 to 57,567
GFF2822
GFF2823 - Protein-L-isoaspartate O-methyltransferase, at 57,716 to 58,372
GFF2823
GFF2824 - Outer membrane protein TolC, at 58,397 to 59,743
GFF2824
GFF2825 - hypothetical protein, at 59,748 to 60,302
GFF2825
GFF2826 - hypothetical protein, at 60,428 to 61,549
GFF2826
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.509 kb on + strand at 57.509 kb on + strand at 57.511 kb on + strand at 57.512 kb on - strand at 57.512 kb on - strand at 57.599 kb on + strand at 57.599 kb on + strand at 57.599 kb on + strand at 57.600 kb on - strand at 57.600 kb on - strand at 57.604 kb on + strand at 57.604 kb on + strand at 57.604 kb on + strand at 57.604 kb on + strand at 57.604 kb on + strand at 57.604 kb on + strand at 57.605 kb on - strand at 57.605 kb on - strand at 57.605 kb on - strand at 57.605 kb on - strand at 57.605 kb on - strand at 57.608 kb on + strand at 57.608 kb on + strand at 57.612 kb on + strand at 57.612 kb on + strand at 57.612 kb on + strand at 57.613 kb on - strand at 57.641 kb on + strand at 57.642 kb on - strand at 57.664 kb on + strand at 57.664 kb on + strand at 57.664 kb on + strand at 57.665 kb on - strand at 57.665 kb on - strand at 57.665 kb on - strand at 57.675 kb on + strand at 57.675 kb on + strand at 57.675 kb on + strand at 57.675 kb on + strand at 57.675 kb on + strand at 57.676 kb on - strand at 57.676 kb on - strand at 57.676 kb on - strand at 57.676 kb on - strand at 57.677 kb on + strand at 58.098 kb on + strand, within GFF2823 at 58.130 kb on + strand, within GFF2823 at 58.148 kb on + strand, within GFF2823 at 58.363 kb on + strand at 58.370 kb on + strand at 58.388 kb on + strand at 58.388 kb on + strand at 58.389 kb on - strand at 58.389 kb on - strand at 58.396 kb on + strand at 58.396 kb on + strand at 58.397 kb on - strand at 58.397 kb on - strand at 58.412 kb on + strand at 58.493 kb on + strand at 58.566 kb on + strand, within GFF2824 at 58.566 kb on + strand, within GFF2824 at 58.566 kb on + strand, within GFF2824 at 58.638 kb on + strand, within GFF2824 at 58.685 kb on + strand, within GFF2824 at 58.685 kb on + strand, within GFF2824 at 58.707 kb on + strand, within GFF2824 at 58.707 kb on + strand, within GFF2824 at 58.707 kb on + strand, within GFF2824 at 58.707 kb on + strand, within GFF2824 at 58.752 kb on + strand, within GFF2824 at 58.793 kb on + strand, within GFF2824 at 58.794 kb on - strand, within GFF2824 at 59.029 kb on + strand, within GFF2824 at 59.244 kb on + strand, within GFF2824 at 59.244 kb on + strand, within GFF2824 at 59.244 kb on + strand, within GFF2824 at 59.261 kb on + strand, within GFF2824 at 59.262 kb on - strand, within GFF2824 at 59.262 kb on - strand, within GFF2824 at 59.273 kb on + strand, within GFF2824 at 59.323 kb on + strand, within GFF2824 at 59.325 kb on + strand, within GFF2824 at 59.325 kb on + strand, within GFF2824 at 59.351 kb on + strand, within GFF2824 at 59.351 kb on + strand, within GFF2824 at 59.393 kb on + strand, within GFF2824 at 59.465 kb on + strand, within GFF2824 at 59.465 kb on + strand, within GFF2824 at 59.496 kb on + strand, within GFF2824 at 59.497 kb on - strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.583 kb on + strand, within GFF2824 at 59.589 kb on + strand, within GFF2824 at 59.590 kb on - strand, within GFF2824 at 59.609 kb on + strand at 59.612 kb on + strand at 59.612 kb on + strand at 59.613 kb on - strand at 59.631 kb on + strand at 59.631 kb on + strand at 59.645 kb on + strand at 59.647 kb on + strand at 59.647 kb on + strand at 59.648 kb on - strand at 59.648 kb on - strand at 59.648 kb on - strand at 59.648 kb on - strand at 59.651 kb on + strand at 59.651 kb on + strand at 59.651 kb on + strand at 59.651 kb on + strand at 59.652 kb on - strand at 59.652 kb on - strand at 59.662 kb on + strand at 59.663 kb on - strand at 59.663 kb on - strand at 59.717 kb on - strand at 59.718 kb on + strand at 59.718 kb on + strand at 59.718 kb on + strand at 59.718 kb on + strand at 59.718 kb on + strand at 59.719 kb on - strand at 59.741 kb on + strand at 59.741 kb on + strand at 59.741 kb on + strand at 59.742 kb on - strand at 59.742 kb on - strand at 59.742 kb on - strand at 59.742 kb on - strand at 59.773 kb on - strand at 59.796 kb on - strand at 59.797 kb on + strand at 59.797 kb on + strand at 59.797 kb on + strand at 59.797 kb on + strand at 59.798 kb on - strand at 59.798 kb on - strand at 59.970 kb on + strand, within GFF2825 at 59.970 kb on + strand, within GFF2825 at 59.971 kb on - strand, within GFF2825 at 60.080 kb on + strand, within GFF2825 at 60.080 kb on + strand, within GFF2825 at 60.103 kb on + strand, within GFF2825 at 60.104 kb on - strand, within GFF2825 at 60.139 kb on + strand, within GFF2825 at 60.212 kb on + strand, within GFF2825 at 60.212 kb on + strand, within GFF2825 at 60.212 kb on + strand, within GFF2825 at 60.213 kb on - strand, within GFF2825 at 60.213 kb on - strand, within GFF2825 at 60.319 kb on + strand at 60.319 kb on + strand at 60.320 kb on - strand at 60.320 kb on - strand at 60.320 kb on - strand at 60.320 kb on - strand at 60.324 kb on + strand at 60.324 kb on + strand at 60.325 kb on - strand at 60.325 kb on - strand at 60.353 kb on + strand at 60.358 kb on - strand at 60.370 kb on + strand at 60.371 kb on - strand at 60.380 kb on + strand at 60.452 kb on + strand at 60.452 kb on + strand at 60.453 kb on - strand at 60.574 kb on + strand, within GFF2826 at 60.622 kb on + strand, within GFF2826 at 60.700 kb on + strand, within GFF2826 at 60.724 kb on + strand, within GFF2826
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 57,509 + +1.2 57,509 + -0.9 57,511 + -1.1 57,512 - -1.4 57,512 - -1.1 57,599 + -0.3 57,599 + +1.2 57,599 + +0.9 57,600 - -0.1 57,600 - -0.4 57,604 + -1.5 57,604 + +0.4 57,604 + -0.7 57,604 + +0.2 57,604 + +0.0 57,604 + -0.5 57,605 - -1.3 57,605 - -2.0 57,605 - -0.7 57,605 - -1.3 57,605 - -0.3 57,608 + +1.1 57,608 + -0.4 57,612 + -0.1 57,612 + -0.9 57,612 + -0.7 57,613 - -0.1 57,641 + -0.6 57,642 - -1.7 57,664 + +0.3 57,664 + -0.1 57,664 + -0.8 57,665 - +0.9 57,665 - -0.3 57,665 - +0.5 57,675 + +0.2 57,675 + -0.2 57,675 + +0.9 57,675 + -0.3 57,675 + -1.8 57,676 - -0.1 57,676 - -0.8 57,676 - +0.2 57,676 - -0.4 57,677 + -1.1 58,098 + GFF2823 0.58 -1.1 58,130 + GFF2823 0.63 -2.4 58,148 + GFF2823 0.66 -1.1 58,363 + -0.9 58,370 + -1.8 58,388 + -0.9 58,388 + -1.4 58,389 - -0.3 58,389 - +1.2 58,396 + +0.1 58,396 + -1.4 58,397 - -2.3 58,397 - +0.2 58,412 + -1.1 58,493 + -0.1 58,566 + GFF2824 0.13 -1.9 58,566 + GFF2824 0.13 -0.1 58,566 + GFF2824 0.13 -1.1 58,638 + GFF2824 0.18 -1.2 58,685 + GFF2824 0.21 -0.8 58,685 + GFF2824 0.21 +0.2 58,707 + GFF2824 0.23 +0.3 58,707 + GFF2824 0.23 -1.4 58,707 + GFF2824 0.23 -0.1 58,707 + GFF2824 0.23 -1.1 58,752 + GFF2824 0.26 +0.1 58,793 + GFF2824 0.29 -0.2 58,794 - GFF2824 0.29 -2.8 59,029 + GFF2824 0.47 -1.1 59,244 + GFF2824 0.63 -1.1 59,244 + GFF2824 0.63 -0.1 59,244 + GFF2824 0.63 -1.3 59,261 + GFF2824 0.64 -0.7 59,262 - GFF2824 0.64 -0.7 59,262 - GFF2824 0.64 -1.1 59,273 + GFF2824 0.65 -0.3 59,323 + GFF2824 0.69 -1.1 59,325 + GFF2824 0.69 -1.5 59,325 + GFF2824 0.69 -1.1 59,351 + GFF2824 0.71 -0.1 59,351 + GFF2824 0.71 -1.0 59,393 + GFF2824 0.74 -0.4 59,465 + GFF2824 0.79 -1.1 59,465 + GFF2824 0.79 -0.5 59,496 + GFF2824 0.82 -0.5 59,497 - GFF2824 0.82 -1.1 59,583 + GFF2824 0.88 -2.3 59,583 + GFF2824 0.88 +0.1 59,583 + GFF2824 0.88 -0.8 59,583 + GFF2824 0.88 -1.4 59,583 + GFF2824 0.88 -1.4 59,583 + GFF2824 0.88 -1.1 59,583 + GFF2824 0.88 -0.4 59,589 + GFF2824 0.88 -0.4 59,590 - GFF2824 0.89 -1.3 59,609 + -0.1 59,612 + -0.1 59,612 + -1.7 59,613 - -0.7 59,631 + +0.2 59,631 + -1.1 59,645 + +0.5 59,647 + -1.7 59,647 + -1.1 59,648 - -1.1 59,648 - -0.3 59,648 - +0.1 59,648 - -1.4 59,651 + -0.4 59,651 + -1.1 59,651 + -1.1 59,651 + -0.1 59,652 - -1.1 59,652 - -0.2 59,662 + -1.4 59,663 - -1.7 59,663 - -1.1 59,717 - -0.1 59,718 + -0.7 59,718 + +0.2 59,718 + -0.2 59,718 + -1.7 59,718 + -1.1 59,719 - -0.7 59,741 + -0.4 59,741 + -0.1 59,741 + -0.4 59,742 - -0.1 59,742 - -0.1 59,742 - -0.9 59,742 - -1.4 59,773 - -1.1 59,796 - -0.2 59,797 + -0.1 59,797 + -1.5 59,797 + -0.5 59,797 + -1.7 59,798 - -0.1 59,798 - -0.4 59,970 + GFF2825 0.40 -0.4 59,970 + GFF2825 0.40 -2.0 59,971 - GFF2825 0.40 -2.1 60,080 + GFF2825 0.60 -1.7 60,080 + GFF2825 0.60 -0.7 60,103 + GFF2825 0.64 -2.8 60,104 - GFF2825 0.64 -1.1 60,139 + GFF2825 0.70 +1.3 60,212 + GFF2825 0.84 -0.8 60,212 + GFF2825 0.84 -0.7 60,212 + GFF2825 0.84 -0.7 60,213 - GFF2825 0.84 +0.6 60,213 - GFF2825 0.84 -2.8 60,319 + -0.1 60,319 + -0.0 60,320 - -0.5 60,320 - -0.8 60,320 - +0.5 60,320 - -0.1 60,324 + -0.6 60,324 + -1.2 60,325 - -0.0 60,325 - -0.5 60,353 + -0.3 60,358 - -0.6 60,370 + +0.1 60,371 - +0.2 60,380 + +0.2 60,452 + -0.4 60,452 + -0.1 60,453 - -0.1 60,574 + GFF2826 0.13 -0.2 60,622 + GFF2826 0.17 -1.0 60,700 + GFF2826 0.24 +0.5 60,724 + GFF2826 0.26 -0.2
Or see this region's nucleotide sequence