Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06145

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06143 and MPMX19_06144 are separated by 86 nucleotidesMPMX19_06144 and MPMX19_06145 are separated by 12 nucleotidesMPMX19_06145 and MPMX19_06146 are separated by 246 nucleotidesMPMX19_06146 and MPMX19_06147 are separated by 4 nucleotidesMPMX19_06147 and MPMX19_06148 are separated by 22 nucleotides MPMX19_06143: MPMX19_06143 - Endonuclease III, at 330,732 to 331,412 _06143 MPMX19_06144: MPMX19_06144 - hypothetical protein, at 331,499 to 331,729 _06144 MPMX19_06145: MPMX19_06145 - hypothetical protein, at 331,742 to 332,728 _06145 MPMX19_06146: MPMX19_06146 - hypothetical protein, at 332,975 to 333,265 _06146 MPMX19_06147: MPMX19_06147 - hypothetical protein, at 333,270 to 333,698 _06147 MPMX19_06148: MPMX19_06148 - Beta-glucosidase A, at 333,721 to 335,208 _06148 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 330.849 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.459 kb on + strandat 331.459 kb on + strandat 331.459 kb on + strandat 331.460 kb on - strandat 331.460 kb on - strandat 331.460 kb on - strandat 331.508 kb on + strandat 331.508 kb on + strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.568 kb on + strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144at 332.797 kb on + strandat 332.797 kb on + strandat 332.797 kb on + strandat 332.797 kb on + strandat 332.797 kb on + strandat 332.797 kb on + strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.798 kb on - strandat 332.808 kb on + strandat 332.808 kb on + strandat 332.808 kb on + strandat 332.809 kb on - strandat 332.935 kb on - strandat 333.122 kb on + strand, within MPMX19_06146at 333.122 kb on + strand, within MPMX19_06146at 333.122 kb on + strand, within MPMX19_06146at 333.122 kb on + strand, within MPMX19_06146at 333.122 kb on + strand, within MPMX19_06146at 333.123 kb on - strand, within MPMX19_06146at 333.123 kb on - strand, within MPMX19_06146at 333.123 kb on - strand, within MPMX19_06146at 333.251 kb on + strandat 333.251 kb on + strandat 333.251 kb on + strandat 333.252 kb on - strandat 333.252 kb on - strandat 333.252 kb on - strandat 333.252 kb on - strandat 333.271 kb on + strandat 333.271 kb on + strandat 333.271 kb on + strandat 333.271 kb on + strandat 333.271 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.295 kb on + strandat 333.296 kb on - strandat 333.296 kb on - strandat 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.340 kb on + strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.341 kb on - strand, within MPMX19_06147at 333.472 kb on + strand, within MPMX19_06147at 333.472 kb on + strand, within MPMX19_06147at 333.472 kb on + strand, within MPMX19_06147at 333.472 kb on + strand, within MPMX19_06147at 333.473 kb on - strand, within MPMX19_06147at 333.473 kb on - strand, within MPMX19_06147at 333.473 kb on - strand, within MPMX19_06147at 333.511 kb on + strand, within MPMX19_06147at 333.512 kb on - strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.529 kb on + strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.530 kb on - strand, within MPMX19_06147at 333.553 kb on + strand, within MPMX19_06147at 333.553 kb on + strand, within MPMX19_06147at 333.553 kb on + strand, within MPMX19_06147at 333.553 kb on + strand, within MPMX19_06147at 333.554 kb on - strand, within MPMX19_06147at 333.554 kb on - strand, within MPMX19_06147at 333.709 kb on + strandat 333.709 kb on + strandat 333.710 kb on - strandat 333.710 kb on - strandat 333.710 kb on - strandat 333.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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330,849 + MPMX19_06143 0.17 -1.8
331,221 + MPMX19_06143 0.72 +0.8
331,221 + MPMX19_06143 0.72 +0.0
331,221 + MPMX19_06143 0.72 +0.4
331,221 + MPMX19_06143 0.72 +1.1
331,221 + MPMX19_06143 0.72 +0.3
331,221 + MPMX19_06143 0.72 -0.7
331,222 - MPMX19_06143 0.72 -0.7
331,222 - MPMX19_06143 0.72 -1.7
331,222 - MPMX19_06143 0.72 -0.4
331,222 - MPMX19_06143 0.72 -0.6
331,222 - MPMX19_06143 0.72 +1.1
331,222 - MPMX19_06143 0.72 +0.5
331,222 - MPMX19_06143 0.72 +1.1
331,222 - MPMX19_06143 0.72 -0.3
331,222 - MPMX19_06143 0.72 -0.3
331,222 - MPMX19_06143 0.72 -1.2
331,222 - MPMX19_06143 0.72 -1.0
331,222 - MPMX19_06143 0.72 +0.4
331,222 - MPMX19_06143 0.72 +0.2
331,222 - MPMX19_06143 0.72 +0.2
331,222 - MPMX19_06143 0.72 -0.7
331,222 - MPMX19_06143 0.72 -1.2
331,222 - MPMX19_06143 0.72 -2.1
331,284 + MPMX19_06143 0.81 +1.0
331,284 + MPMX19_06143 0.81 -1.7
331,284 + MPMX19_06143 0.81 +1.3
331,459 + -0.1
331,459 + -0.1
331,459 + +1.0
331,460 - -0.6
331,460 - +1.4
331,460 - -0.2
331,508 + -1.8
331,508 + -0.4
331,509 - -0.8
331,509 - -1.7
331,509 - +0.2
331,509 - -0.3
331,509 - +0.6
331,568 + MPMX19_06144 0.30 +0.4
331,569 - MPMX19_06144 0.30 -0.2
331,569 - MPMX19_06144 0.30 -0.3
331,569 - MPMX19_06144 0.30 -0.6
332,797 + -0.0
332,797 + -0.4
332,797 + -1.7
332,797 + -0.7
332,797 + +0.4
332,797 + -2.6
332,798 - -0.5
332,798 - -0.5
332,798 - +0.0
332,798 - -0.6
332,798 - +0.7
332,798 - -0.7
332,798 - -0.6
332,798 - -0.7
332,798 - -0.3
332,808 + +0.2
332,808 + +0.3
332,808 + +0.4
332,809 - -1.6
332,935 - -2.5
333,122 + MPMX19_06146 0.51 -0.5
333,122 + MPMX19_06146 0.51 -0.7
333,122 + MPMX19_06146 0.51 +0.1
333,122 + MPMX19_06146 0.51 +0.2
333,122 + MPMX19_06146 0.51 -0.6
333,123 - MPMX19_06146 0.51 +1.5
333,123 - MPMX19_06146 0.51 -2.0
333,123 - MPMX19_06146 0.51 -0.4
333,251 + -1.1
333,251 + -0.8
333,251 + -0.8
333,252 - +0.4
333,252 - +0.7
333,252 - +0.0
333,252 - +0.0
333,271 + -0.6
333,271 + -1.8
333,271 + -2.1
333,271 + +0.4
333,271 + -0.8
333,295 + -1.5
333,295 + -0.7
333,295 + -1.7
333,295 + +1.0
333,295 + +0.4
333,295 + -0.2
333,295 + +0.0
333,295 + +0.5
333,295 + -0.6
333,295 + -1.4
333,296 - +0.3
333,296 - -1.3
333,340 + MPMX19_06147 0.16 -1.7
333,340 + MPMX19_06147 0.16 -0.4
333,340 + MPMX19_06147 0.16 +0.1
333,340 + MPMX19_06147 0.16 -1.6
333,340 + MPMX19_06147 0.16 +0.5
333,340 + MPMX19_06147 0.16 -1.1
333,340 + MPMX19_06147 0.16 -1.1
333,340 + MPMX19_06147 0.16 +0.7
333,340 + MPMX19_06147 0.16 +0.0
333,340 + MPMX19_06147 0.16 -0.8
333,340 + MPMX19_06147 0.16 -0.7
333,340 + MPMX19_06147 0.16 -0.4
333,341 - MPMX19_06147 0.17 -1.6
333,341 - MPMX19_06147 0.17 +0.0
333,341 - MPMX19_06147 0.17 -0.7
333,341 - MPMX19_06147 0.17 -0.6
333,341 - MPMX19_06147 0.17 +0.4
333,341 - MPMX19_06147 0.17 -0.7
333,341 - MPMX19_06147 0.17 -0.8
333,341 - MPMX19_06147 0.17 +1.0
333,341 - MPMX19_06147 0.17 +1.3
333,341 - MPMX19_06147 0.17 -1.7
333,341 - MPMX19_06147 0.17 +0.2
333,341 - MPMX19_06147 0.17 +0.6
333,341 - MPMX19_06147 0.17 +0.9
333,341 - MPMX19_06147 0.17 +0.3
333,341 - MPMX19_06147 0.17 -2.7
333,341 - MPMX19_06147 0.17 -0.8
333,341 - MPMX19_06147 0.17 +0.1
333,341 - MPMX19_06147 0.17 -0.3
333,341 - MPMX19_06147 0.17 +1.9
333,472 + MPMX19_06147 0.47 -0.3
333,472 + MPMX19_06147 0.47 +1.0
333,472 + MPMX19_06147 0.47 -2.7
333,472 + MPMX19_06147 0.47 -1.4
333,473 - MPMX19_06147 0.47 +0.4
333,473 - MPMX19_06147 0.47 -0.4
333,473 - MPMX19_06147 0.47 -0.6
333,511 + MPMX19_06147 0.56 -0.4
333,512 - MPMX19_06147 0.56 -0.4
333,529 + MPMX19_06147 0.60 -0.5
333,529 + MPMX19_06147 0.60 -0.8
333,529 + MPMX19_06147 0.60 -1.2
333,529 + MPMX19_06147 0.60 +0.4
333,529 + MPMX19_06147 0.60 -1.3
333,529 + MPMX19_06147 0.60 +0.8
333,529 + MPMX19_06147 0.60 -1.1
333,529 + MPMX19_06147 0.60 -1.1
333,530 - MPMX19_06147 0.61 -1.6
333,530 - MPMX19_06147 0.61 +0.2
333,530 - MPMX19_06147 0.61 +1.0
333,530 - MPMX19_06147 0.61 -0.2
333,530 - MPMX19_06147 0.61 -1.6
333,530 - MPMX19_06147 0.61 -1.0
333,530 - MPMX19_06147 0.61 -1.3
333,530 - MPMX19_06147 0.61 -0.2
333,553 + MPMX19_06147 0.66 -1.2
333,553 + MPMX19_06147 0.66 -0.1
333,553 + MPMX19_06147 0.66 -0.4
333,553 + MPMX19_06147 0.66 -0.1
333,554 - MPMX19_06147 0.66 -2.1
333,554 - MPMX19_06147 0.66 -1.6
333,709 + -0.7
333,709 + -1.2
333,710 - +0.9
333,710 - -0.4
333,710 - +0.0
333,710 - -0.9

Or see this region's nucleotide sequence