Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06025 and MPMX19_06026 are separated by 74 nucleotides MPMX19_06026 and MPMX19_06027 are separated by 168 nucleotides
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
MPMX19_06026: MPMX19_06026 - hypothetical protein, at 178,967 to 179,530
_06026
MPMX19_06027: MPMX19_06027 - hypothetical protein, at 179,699 to 180,925
_06027
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 179.119 kb on - strand, within MPMX19_06026 at 179.551 kb on - strand at 179.563 kb on + strand at 179.563 kb on + strand at 179.564 kb on - strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.673 kb on + strand at 179.674 kb on - strand at 179.674 kb on - strand at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 178,893 - +0.0 178,893 - -0.2 178,893 - +0.6 178,893 - -1.2 178,893 - -1.4 178,968 + -0.7 178,968 + +0.6 178,968 + -0.3 178,968 + +0.9 178,968 + -0.5 178,969 - +0.0 178,969 - -0.2 178,969 - -0.2 178,969 - -1.2 178,969 - +0.5 178,969 - +1.1 179,119 - MPMX19_06026 0.27 +0.6 179,551 - +0.2 179,563 + +1.0 179,563 + -0.0 179,564 - -0.1 179,627 + +0.0 179,627 + +0.8 179,627 + +0.0 179,627 + -0.7 179,673 + -0.9 179,674 - +0.6 179,674 - -0.4 179,927 + MPMX19_06027 0.19 +1.9 179,927 + MPMX19_06027 0.19 +1.6 179,927 + MPMX19_06027 0.19 -2.7 179,927 + MPMX19_06027 0.19 -0.4 179,927 + MPMX19_06027 0.19 -0.7 179,928 - MPMX19_06027 0.19 +0.9 179,928 - MPMX19_06027 0.19 -0.1 179,928 - MPMX19_06027 0.19 +0.3 179,928 - MPMX19_06027 0.19 -0.5 179,928 - MPMX19_06027 0.19 -0.7 179,928 - MPMX19_06027 0.19 -0.7 179,928 - MPMX19_06027 0.19 +0.8 179,928 - MPMX19_06027 0.19 +0.0
Or see this region's nucleotide sequence