Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13650

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13645 and RR41_RS13650 are separated by 34 nucleotidesRR41_RS13650 and RR41_RS13655 are separated by 10 nucleotidesRR41_RS13655 and RR41_RS13660 are separated by 10 nucleotides RR41_RS13645: RR41_RS13645 - PDR/VanB family oxidoreductase, at 2,854,819 to 2,855,772 _RS13645 RR41_RS13650: RR41_RS13650 - SDR family oxidoreductase, at 2,855,807 to 2,856,544 _RS13650 RR41_RS13655: RR41_RS13655 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 2,856,555 to 2,857,040 _RS13655 RR41_RS13660: RR41_RS13660 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,857,051 to 2,858,328 _RS13660 Position (kb) 2855 2856 2857Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2854.821 kb on - strandat 2854.870 kb on + strandat 2854.939 kb on + strand, within RR41_RS13645at 2854.950 kb on + strand, within RR41_RS13645at 2855.201 kb on + strand, within RR41_RS13645at 2855.202 kb on - strand, within RR41_RS13645at 2855.202 kb on - strand, within RR41_RS13645at 2855.206 kb on - strand, within RR41_RS13645at 2855.291 kb on + strand, within RR41_RS13645at 2855.563 kb on + strand, within RR41_RS13645at 2855.628 kb on + strand, within RR41_RS13645at 2855.653 kb on - strand, within RR41_RS13645at 2855.759 kb on + strandat 2855.900 kb on - strand, within RR41_RS13650at 2856.011 kb on - strand, within RR41_RS13650at 2856.145 kb on + strand, within RR41_RS13650at 2856.178 kb on - strand, within RR41_RS13650at 2856.178 kb on - strand, within RR41_RS13650at 2856.403 kb on - strand, within RR41_RS13650at 2856.418 kb on + strand, within RR41_RS13650at 2856.565 kb on + strandat 2856.569 kb on + strandat 2856.597 kb on - strandat 2856.635 kb on + strand, within RR41_RS13655at 2856.677 kb on - strand, within RR41_RS13655at 2856.795 kb on - strand, within RR41_RS13655at 2856.865 kb on + strand, within RR41_RS13655at 2856.871 kb on + strand, within RR41_RS13655at 2856.921 kb on - strand, within RR41_RS13655at 2856.922 kb on + strand, within RR41_RS13655at 2856.981 kb on - strand, within RR41_RS13655at 2857.018 kb on - strandat 2857.279 kb on + strand, within RR41_RS13660at 2857.280 kb on - strand, within RR41_RS13660at 2857.367 kb on - strand, within RR41_RS13660at 2857.463 kb on - strand, within RR41_RS13660

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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2,854,821 - -2.4
2,854,870 + -1.1
2,854,939 + RR41_RS13645 0.13 -0.1
2,854,950 + RR41_RS13645 0.14 -0.4
2,855,201 + RR41_RS13645 0.40 +3.5
2,855,202 - RR41_RS13645 0.40 -2.6
2,855,202 - RR41_RS13645 0.40 -3.1
2,855,206 - RR41_RS13645 0.41 -0.8
2,855,291 + RR41_RS13645 0.49 -2.1
2,855,563 + RR41_RS13645 0.78 -2.1
2,855,628 + RR41_RS13645 0.85 +1.2
2,855,653 - RR41_RS13645 0.87 -0.4
2,855,759 + +0.2
2,855,900 - RR41_RS13650 0.13 -2.4
2,856,011 - RR41_RS13650 0.28 +1.2
2,856,145 + RR41_RS13650 0.46 +0.2
2,856,178 - RR41_RS13650 0.50 -2.8
2,856,178 - RR41_RS13650 0.50 +1.2
2,856,403 - RR41_RS13650 0.81 -1.2
2,856,418 + RR41_RS13650 0.83 -1.2
2,856,565 + -0.8
2,856,569 + +0.2
2,856,597 - -0.8
2,856,635 + RR41_RS13655 0.16 -1.4
2,856,677 - RR41_RS13655 0.25 -0.8
2,856,795 - RR41_RS13655 0.49 +0.2
2,856,865 + RR41_RS13655 0.64 -0.2
2,856,871 + RR41_RS13655 0.65 -3.1
2,856,921 - RR41_RS13655 0.75 -0.8
2,856,922 + RR41_RS13655 0.76 -0.8
2,856,981 - RR41_RS13655 0.88 +0.9
2,857,018 - +0.2
2,857,279 + RR41_RS13660 0.18 -2.1
2,857,280 - RR41_RS13660 0.18 +0.2
2,857,367 - RR41_RS13660 0.25 -0.8
2,857,463 - RR41_RS13660 0.32 -3.0

Or see this region's nucleotide sequence