Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13645 and RR41_RS13650 are separated by 34 nucleotides RR41_RS13650 and RR41_RS13655 are separated by 10 nucleotides RR41_RS13655 and RR41_RS13660 are separated by 10 nucleotides
RR41_RS13645: RR41_RS13645 - PDR/VanB family oxidoreductase, at 2,854,819 to 2,855,772
_RS13645
RR41_RS13650: RR41_RS13650 - SDR family oxidoreductase, at 2,855,807 to 2,856,544
_RS13650
RR41_RS13655: RR41_RS13655 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 2,856,555 to 2,857,040
_RS13655
RR41_RS13660: RR41_RS13660 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,857,051 to 2,858,328
_RS13660
Position (kb)
2855
2856
2857 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2854.821 kb on - strand at 2854.870 kb on + strand at 2854.939 kb on + strand, within RR41_RS13645 at 2854.950 kb on + strand, within RR41_RS13645 at 2855.201 kb on + strand, within RR41_RS13645 at 2855.202 kb on - strand, within RR41_RS13645 at 2855.202 kb on - strand, within RR41_RS13645 at 2855.206 kb on - strand, within RR41_RS13645 at 2855.291 kb on + strand, within RR41_RS13645 at 2855.563 kb on + strand, within RR41_RS13645 at 2855.628 kb on + strand, within RR41_RS13645 at 2855.653 kb on - strand, within RR41_RS13645 at 2855.759 kb on + strand at 2855.900 kb on - strand, within RR41_RS13650 at 2856.011 kb on - strand, within RR41_RS13650 at 2856.145 kb on + strand, within RR41_RS13650 at 2856.178 kb on - strand, within RR41_RS13650 at 2856.178 kb on - strand, within RR41_RS13650 at 2856.403 kb on - strand, within RR41_RS13650 at 2856.418 kb on + strand, within RR41_RS13650 at 2856.565 kb on + strand at 2856.569 kb on + strand at 2856.597 kb on - strand at 2856.635 kb on + strand, within RR41_RS13655 at 2856.677 kb on - strand, within RR41_RS13655 at 2856.795 kb on - strand, within RR41_RS13655 at 2856.865 kb on + strand, within RR41_RS13655 at 2856.871 kb on + strand, within RR41_RS13655 at 2856.921 kb on - strand, within RR41_RS13655 at 2856.922 kb on + strand, within RR41_RS13655 at 2856.981 kb on - strand, within RR41_RS13655 at 2857.018 kb on - strand at 2857.279 kb on + strand, within RR41_RS13660 at 2857.280 kb on - strand, within RR41_RS13660 at 2857.367 kb on - strand, within RR41_RS13660 at 2857.463 kb on - strand, within RR41_RS13660
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 2,854,821 - -2.4 2,854,870 + -1.1 2,854,939 + RR41_RS13645 0.13 -0.1 2,854,950 + RR41_RS13645 0.14 -0.4 2,855,201 + RR41_RS13645 0.40 +3.5 2,855,202 - RR41_RS13645 0.40 -2.6 2,855,202 - RR41_RS13645 0.40 -3.1 2,855,206 - RR41_RS13645 0.41 -0.8 2,855,291 + RR41_RS13645 0.49 -2.1 2,855,563 + RR41_RS13645 0.78 -2.1 2,855,628 + RR41_RS13645 0.85 +1.2 2,855,653 - RR41_RS13645 0.87 -0.4 2,855,759 + +0.2 2,855,900 - RR41_RS13650 0.13 -2.4 2,856,011 - RR41_RS13650 0.28 +1.2 2,856,145 + RR41_RS13650 0.46 +0.2 2,856,178 - RR41_RS13650 0.50 -2.8 2,856,178 - RR41_RS13650 0.50 +1.2 2,856,403 - RR41_RS13650 0.81 -1.2 2,856,418 + RR41_RS13650 0.83 -1.2 2,856,565 + -0.8 2,856,569 + +0.2 2,856,597 - -0.8 2,856,635 + RR41_RS13655 0.16 -1.4 2,856,677 - RR41_RS13655 0.25 -0.8 2,856,795 - RR41_RS13655 0.49 +0.2 2,856,865 + RR41_RS13655 0.64 -0.2 2,856,871 + RR41_RS13655 0.65 -3.1 2,856,921 - RR41_RS13655 0.75 -0.8 2,856,922 + RR41_RS13655 0.76 -0.8 2,856,981 - RR41_RS13655 0.88 +0.9 2,857,018 - +0.2 2,857,279 + RR41_RS13660 0.18 -2.1 2,857,280 - RR41_RS13660 0.18 +0.2 2,857,367 - RR41_RS13660 0.25 -0.8 2,857,463 - RR41_RS13660 0.32 -3.0
Or see this region's nucleotide sequence