Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS07815 and RR41_RS07820 are separated by 3 nucleotides RR41_RS07820 and RR41_RS07825 are separated by 820 nucleotides
RR41_RS07815: RR41_RS07815 - Y-family DNA polymerase, at 1,609,429 to 1,610,727
_RS07815
RR41_RS07820: RR41_RS07820 - translesion error-prone DNA polymerase V autoproteolytic subunit, at 1,610,731 to 1,611,225
_RS07820
RR41_RS07825: RR41_RS07825 - SOS response-associated peptidase family protein, at 1,612,046 to 1,612,675
_RS07825
Position (kb)
1610
1611
1612 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1609.791 kb on - strand, within RR41_RS07815 at 1609.825 kb on + strand, within RR41_RS07815 at 1609.839 kb on + strand, within RR41_RS07815 at 1609.840 kb on - strand, within RR41_RS07815 at 1609.893 kb on - strand, within RR41_RS07815 at 1610.026 kb on - strand, within RR41_RS07815 at 1610.028 kb on + strand, within RR41_RS07815 at 1610.098 kb on - strand, within RR41_RS07815 at 1610.206 kb on + strand, within RR41_RS07815 at 1610.489 kb on + strand, within RR41_RS07815 at 1610.490 kb on - strand, within RR41_RS07815 at 1610.755 kb on - strand at 1610.779 kb on + strand at 1610.780 kb on - strand at 1610.811 kb on + strand, within RR41_RS07820 at 1610.814 kb on - strand, within RR41_RS07820 at 1610.870 kb on - strand, within RR41_RS07820 at 1611.000 kb on + strand, within RR41_RS07820 at 1611.025 kb on + strand, within RR41_RS07820 at 1611.055 kb on + strand, within RR41_RS07820 at 1611.225 kb on + strand at 1611.317 kb on + strand at 1611.460 kb on + strand at 1611.492 kb on + strand at 1611.496 kb on + strand at 1611.497 kb on - strand at 1611.497 kb on - strand at 1611.543 kb on + strand at 1611.543 kb on + strand at 1611.836 kb on + strand at 1611.838 kb on + strand at 1611.902 kb on + strand at 1612.005 kb on - strand at 1612.168 kb on + strand, within RR41_RS07825
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 1,609,791 - RR41_RS07815 0.28 -2.1 1,609,825 + RR41_RS07815 0.30 +0.2 1,609,839 + RR41_RS07815 0.32 +0.2 1,609,840 - RR41_RS07815 0.32 -1.4 1,609,893 - RR41_RS07815 0.36 +0.2 1,610,026 - RR41_RS07815 0.46 +1.2 1,610,028 + RR41_RS07815 0.46 -1.8 1,610,098 - RR41_RS07815 0.52 -0.7 1,610,206 + RR41_RS07815 0.60 +0.4 1,610,489 + RR41_RS07815 0.82 +0.2 1,610,490 - RR41_RS07815 0.82 -1.4 1,610,755 - -0.8 1,610,779 + +0.2 1,610,780 - +0.2 1,610,811 + RR41_RS07820 0.16 -0.8 1,610,814 - RR41_RS07820 0.17 -0.8 1,610,870 - RR41_RS07820 0.28 -0.7 1,611,000 + RR41_RS07820 0.54 -0.4 1,611,025 + RR41_RS07820 0.59 -0.8 1,611,055 + RR41_RS07820 0.65 -1.4 1,611,225 + -1.1 1,611,317 + -1.4 1,611,460 + -0.8 1,611,492 + +1.2 1,611,496 + -0.8 1,611,497 - -1.4 1,611,497 - +0.6 1,611,543 + -2.1 1,611,543 + -0.0 1,611,836 + -2.1 1,611,838 + +1.8 1,611,902 + -0.1 1,612,005 - +0.6 1,612,168 + RR41_RS07825 0.19 -1.4
Or see this region's nucleotide sequence