Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS07820

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS07815 and RR41_RS07820 are separated by 3 nucleotidesRR41_RS07820 and RR41_RS07825 are separated by 820 nucleotides RR41_RS07815: RR41_RS07815 - Y-family DNA polymerase, at 1,609,429 to 1,610,727 _RS07815 RR41_RS07820: RR41_RS07820 - translesion error-prone DNA polymerase V autoproteolytic subunit, at 1,610,731 to 1,611,225 _RS07820 RR41_RS07825: RR41_RS07825 - SOS response-associated peptidase family protein, at 1,612,046 to 1,612,675 _RS07825 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1 2at 1609.791 kb on - strand, within RR41_RS07815at 1609.825 kb on + strand, within RR41_RS07815at 1609.839 kb on + strand, within RR41_RS07815at 1609.840 kb on - strand, within RR41_RS07815at 1609.893 kb on - strand, within RR41_RS07815at 1610.026 kb on - strand, within RR41_RS07815at 1610.028 kb on + strand, within RR41_RS07815at 1610.098 kb on - strand, within RR41_RS07815at 1610.206 kb on + strand, within RR41_RS07815at 1610.489 kb on + strand, within RR41_RS07815at 1610.490 kb on - strand, within RR41_RS07815at 1610.755 kb on - strandat 1610.779 kb on + strandat 1610.780 kb on - strandat 1610.811 kb on + strand, within RR41_RS07820at 1610.814 kb on - strand, within RR41_RS07820at 1610.870 kb on - strand, within RR41_RS07820at 1611.000 kb on + strand, within RR41_RS07820at 1611.025 kb on + strand, within RR41_RS07820at 1611.055 kb on + strand, within RR41_RS07820at 1611.225 kb on + strandat 1611.317 kb on + strandat 1611.460 kb on + strandat 1611.492 kb on + strandat 1611.496 kb on + strandat 1611.497 kb on - strandat 1611.497 kb on - strandat 1611.543 kb on + strandat 1611.543 kb on + strandat 1611.836 kb on + strandat 1611.838 kb on + strandat 1611.902 kb on + strandat 1612.005 kb on - strandat 1612.168 kb on + strand, within RR41_RS07825

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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1,609,791 - RR41_RS07815 0.28 -2.1
1,609,825 + RR41_RS07815 0.30 +0.2
1,609,839 + RR41_RS07815 0.32 +0.2
1,609,840 - RR41_RS07815 0.32 -1.4
1,609,893 - RR41_RS07815 0.36 +0.2
1,610,026 - RR41_RS07815 0.46 +1.2
1,610,028 + RR41_RS07815 0.46 -1.8
1,610,098 - RR41_RS07815 0.52 -0.7
1,610,206 + RR41_RS07815 0.60 +0.4
1,610,489 + RR41_RS07815 0.82 +0.2
1,610,490 - RR41_RS07815 0.82 -1.4
1,610,755 - -0.8
1,610,779 + +0.2
1,610,780 - +0.2
1,610,811 + RR41_RS07820 0.16 -0.8
1,610,814 - RR41_RS07820 0.17 -0.8
1,610,870 - RR41_RS07820 0.28 -0.7
1,611,000 + RR41_RS07820 0.54 -0.4
1,611,025 + RR41_RS07820 0.59 -0.8
1,611,055 + RR41_RS07820 0.65 -1.4
1,611,225 + -1.1
1,611,317 + -1.4
1,611,460 + -0.8
1,611,492 + +1.2
1,611,496 + -0.8
1,611,497 - -1.4
1,611,497 - +0.6
1,611,543 + -2.1
1,611,543 + -0.0
1,611,836 + -2.1
1,611,838 + +1.8
1,611,902 + -0.1
1,612,005 - +0.6
1,612,168 + RR41_RS07825 0.19 -1.4

Or see this region's nucleotide sequence