Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS07800

Experiment: RPMI_TSB_serum temperature; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS07780 and RR41_RS07785 are separated by 0 nucleotidesRR41_RS07785 and RR41_RS07790 are separated by 0 nucleotidesRR41_RS07790 and RR41_RS07795 are separated by 4 nucleotidesRR41_RS07795 and RR41_RS07800 are separated by 15 nucleotidesRR41_RS07800 and RR41_RS07805 are separated by 41 nucleotides RR41_RS07780: RR41_RS07780 - N-acetylmuramidase, at 1,605,200 to 1,605,745 _RS07780 RR41_RS07785: RR41_RS07785 - hypothetical protein, at 1,605,746 to 1,606,060 _RS07785 RR41_RS07790: RR41_RS07790 - hypothetical protein, at 1,606,061 to 1,606,429 _RS07790 RR41_RS07795: RR41_RS07795 - hypothetical protein, at 1,606,434 to 1,606,577 _RS07795 RR41_RS07800: RR41_RS07800 - hypothetical protein, at 1,606,593 to 1,607,036 _RS07800 RR41_RS07805: RR41_RS07805 - IS5-like element ISAba13 family transposase, at 1,607,078 to 1,608,010 _RS07805 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1605.669 kb on - strand, within RR41_RS07780at 1605.669 kb on - strand, within RR41_RS07780at 1605.809 kb on + strand, within RR41_RS07785at 1605.809 kb on + strand, within RR41_RS07785at 1605.810 kb on - strand, within RR41_RS07785at 1605.818 kb on - strand, within RR41_RS07785at 1605.837 kb on - strand, within RR41_RS07785at 1605.934 kb on - strand, within RR41_RS07785at 1606.058 kb on + strandat 1606.059 kb on - strandat 1606.352 kb on - strand, within RR41_RS07790at 1606.388 kb on + strand, within RR41_RS07790at 1606.432 kb on + strandat 1606.432 kb on + strandat 1606.484 kb on + strand, within RR41_RS07795at 1606.505 kb on + strand, within RR41_RS07795at 1606.609 kb on + strandat 1606.647 kb on - strand, within RR41_RS07800at 1606.650 kb on + strand, within RR41_RS07800at 1606.759 kb on + strand, within RR41_RS07800at 1606.811 kb on - strand, within RR41_RS07800at 1606.930 kb on + strand, within RR41_RS07800at 1606.948 kb on - strand, within RR41_RS07800

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Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
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1,605,669 - RR41_RS07780 0.86 +0.2
1,605,669 - RR41_RS07780 0.86 -2.4
1,605,809 + RR41_RS07785 0.20 -0.8
1,605,809 + RR41_RS07785 0.20 -1.4
1,605,810 - RR41_RS07785 0.20 -0.2
1,605,818 - RR41_RS07785 0.23 +2.5
1,605,837 - RR41_RS07785 0.29 +0.2
1,605,934 - RR41_RS07785 0.60 -1.8
1,606,058 + -2.4
1,606,059 - -1.8
1,606,352 - RR41_RS07790 0.79 -0.8
1,606,388 + RR41_RS07790 0.89 -1.8
1,606,432 + -1.8
1,606,432 + -1.8
1,606,484 + RR41_RS07795 0.35 +1.4
1,606,505 + RR41_RS07795 0.49 +1.2
1,606,609 + -0.4
1,606,647 - RR41_RS07800 0.12 +0.2
1,606,650 + RR41_RS07800 0.13 -3.0
1,606,759 + RR41_RS07800 0.37 -2.4
1,606,811 - RR41_RS07800 0.49 -1.4
1,606,930 + RR41_RS07800 0.76 +0.6
1,606,948 - RR41_RS07800 0.80 -3.1

Or see this region's nucleotide sequence