Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS05925

Experiment: RPMI_TSB_serum temperature; 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR41_RS05920 and RR41_RS05925 overlap by 4 nucleotidesRR41_RS05925 and RR41_RS05930 overlap by 8 nucleotidesRR41_RS05930 and RR41_RS05935 are separated by 11 nucleotides RR41_RS05920: RR41_RS05920 - portal protein, at 1,234,373 to 1,236,016 _RS05920 RR41_RS05925: RR41_RS05925 - hypothetical protein, at 1,236,013 to 1,236,498 _RS05925 RR41_RS05930: RR41_RS05930 - hypothetical protein, at 1,236,491 to 1,237,114 _RS05930 RR41_RS05935: RR41_RS05935 - phage capsid protein, at 1,237,126 to 1,238,025 _RS05935 Position (kb) 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1235.174 kb on - strand, within RR41_RS05920at 1235.242 kb on + strand, within RR41_RS05920at 1235.242 kb on + strand, within RR41_RS05920at 1235.243 kb on - strand, within RR41_RS05920at 1235.289 kb on + strand, within RR41_RS05920at 1235.289 kb on + strand, within RR41_RS05920at 1235.290 kb on - strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.297 kb on + strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.298 kb on - strand, within RR41_RS05920at 1235.318 kb on - strand, within RR41_RS05920at 1235.333 kb on - strand, within RR41_RS05920at 1235.344 kb on - strand, within RR41_RS05920at 1235.344 kb on - strand, within RR41_RS05920at 1235.526 kb on + strand, within RR41_RS05920at 1235.526 kb on + strand, within RR41_RS05920at 1235.526 kb on + strand, within RR41_RS05920at 1235.527 kb on - strand, within RR41_RS05920at 1235.527 kb on - strand, within RR41_RS05920at 1235.553 kb on + strand, within RR41_RS05920at 1235.564 kb on + strand, within RR41_RS05920at 1235.564 kb on + strand, within RR41_RS05920at 1235.565 kb on - strand, within RR41_RS05920at 1235.565 kb on - strand, within RR41_RS05920at 1235.601 kb on + strand, within RR41_RS05920at 1235.608 kb on + strand, within RR41_RS05920at 1235.609 kb on - strand, within RR41_RS05920at 1235.718 kb on + strand, within RR41_RS05920at 1235.719 kb on - strand, within RR41_RS05920at 1235.748 kb on + strand, within RR41_RS05920at 1235.766 kb on + strand, within RR41_RS05920at 1235.775 kb on + strand, within RR41_RS05920at 1235.775 kb on + strand, within RR41_RS05920at 1235.790 kb on + strand, within RR41_RS05920at 1235.790 kb on + strand, within RR41_RS05920at 1235.799 kb on + strand, within RR41_RS05920at 1235.799 kb on + strand, within RR41_RS05920at 1235.799 kb on + strand, within RR41_RS05920at 1235.799 kb on + strand, within RR41_RS05920at 1235.799 kb on + strand, within RR41_RS05920at 1235.800 kb on - strand, within RR41_RS05920at 1235.804 kb on - strand, within RR41_RS05920at 1235.838 kb on + strand, within RR41_RS05920at 1235.839 kb on - strand, within RR41_RS05920at 1235.848 kb on + strand, within RR41_RS05920at 1235.848 kb on + strand, within RR41_RS05920at 1235.859 kb on + strandat 1236.033 kb on - strandat 1236.051 kb on + strandat 1236.079 kb on + strand, within RR41_RS05925at 1236.137 kb on + strand, within RR41_RS05925at 1236.137 kb on + strand, within RR41_RS05925at 1236.137 kb on + strand, within RR41_RS05925at 1236.138 kb on - strand, within RR41_RS05925at 1236.142 kb on - strand, within RR41_RS05925at 1236.159 kb on + strand, within RR41_RS05925at 1236.176 kb on + strand, within RR41_RS05925at 1236.298 kb on + strand, within RR41_RS05925at 1236.362 kb on - strand, within RR41_RS05925at 1236.384 kb on + strand, within RR41_RS05925at 1236.403 kb on + strand, within RR41_RS05925at 1236.403 kb on + strand, within RR41_RS05925at 1236.403 kb on + strand, within RR41_RS05925at 1236.404 kb on - strand, within RR41_RS05925at 1236.404 kb on - strand, within RR41_RS05925at 1236.662 kb on + strand, within RR41_RS05930at 1236.662 kb on + strand, within RR41_RS05930at 1236.663 kb on - strand, within RR41_RS05930at 1236.706 kb on + strand, within RR41_RS05930at 1236.845 kb on + strand, within RR41_RS05930at 1236.846 kb on - strand, within RR41_RS05930at 1236.854 kb on - strand, within RR41_RS05930at 1236.960 kb on + strand, within RR41_RS05930at 1237.037 kb on + strand, within RR41_RS05930at 1237.037 kb on + strand, within RR41_RS05930at 1237.037 kb on + strand, within RR41_RS05930at 1237.037 kb on + strand, within RR41_RS05930at 1237.037 kb on + strand, within RR41_RS05930at 1237.038 kb on - strand, within RR41_RS05930at 1237.038 kb on - strand, within RR41_RS05930at 1237.038 kb on - strand, within RR41_RS05930at 1237.161 kb on - strandat 1237.180 kb on + strandat 1237.218 kb on + strand, within RR41_RS05935at 1237.266 kb on - strand, within RR41_RS05935at 1237.320 kb on + strand, within RR41_RS05935at 1237.320 kb on + strand, within RR41_RS05935at 1237.320 kb on + strand, within RR41_RS05935at 1237.347 kb on - strand, within RR41_RS05935at 1237.351 kb on - strand, within RR41_RS05935at 1237.351 kb on - strand, within RR41_RS05935at 1237.359 kb on + strand, within RR41_RS05935at 1237.360 kb on - strand, within RR41_RS05935at 1237.376 kb on + strand, within RR41_RS05935at 1237.435 kb on + strand, within RR41_RS05935at 1237.436 kb on - strand, within RR41_RS05935at 1237.482 kb on + strand, within RR41_RS05935at 1237.482 kb on + strand, within RR41_RS05935at 1237.483 kb on - strand, within RR41_RS05935at 1237.483 kb on - strand, within RR41_RS05935at 1237.486 kb on + strand, within RR41_RS05935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C
remove
1,235,174 - RR41_RS05920 0.49 -1.8
1,235,242 + RR41_RS05920 0.53 +0.6
1,235,242 + RR41_RS05920 0.53 -3.7
1,235,243 - RR41_RS05920 0.53 +0.8
1,235,289 + RR41_RS05920 0.56 +0.2
1,235,289 + RR41_RS05920 0.56 +1.8
1,235,290 - RR41_RS05920 0.56 +0.2
1,235,297 + RR41_RS05920 0.56 +0.4
1,235,297 + RR41_RS05920 0.56 -0.6
1,235,297 + RR41_RS05920 0.56 +2.2
1,235,297 + RR41_RS05920 0.56 -2.6
1,235,297 + RR41_RS05920 0.56 -0.4
1,235,297 + RR41_RS05920 0.56 +0.2
1,235,298 - RR41_RS05920 0.56 -2.9
1,235,298 - RR41_RS05920 0.56 +0.2
1,235,298 - RR41_RS05920 0.56 +1.0
1,235,298 - RR41_RS05920 0.56 -0.8
1,235,298 - RR41_RS05920 0.56 -0.8
1,235,298 - RR41_RS05920 0.56 -3.2
1,235,298 - RR41_RS05920 0.56 +1.8
1,235,298 - RR41_RS05920 0.56 +1.2
1,235,318 - RR41_RS05920 0.57 +1.2
1,235,333 - RR41_RS05920 0.58 +0.2
1,235,344 - RR41_RS05920 0.59 -1.8
1,235,344 - RR41_RS05920 0.59 +1.8
1,235,526 + RR41_RS05920 0.70 -2.1
1,235,526 + RR41_RS05920 0.70 +2.1
1,235,526 + RR41_RS05920 0.70 -0.4
1,235,527 - RR41_RS05920 0.70 -0.4
1,235,527 - RR41_RS05920 0.70 -0.5
1,235,553 + RR41_RS05920 0.72 +0.2
1,235,564 + RR41_RS05920 0.72 -1.4
1,235,564 + RR41_RS05920 0.72 +0.4
1,235,565 - RR41_RS05920 0.73 -2.9
1,235,565 - RR41_RS05920 0.73 -1.4
1,235,601 + RR41_RS05920 0.75 -0.1
1,235,608 + RR41_RS05920 0.75 -0.8
1,235,609 - RR41_RS05920 0.75 +2.0
1,235,718 + RR41_RS05920 0.82 -0.4
1,235,719 - RR41_RS05920 0.82 -0.2
1,235,748 + RR41_RS05920 0.84 +1.2
1,235,766 + RR41_RS05920 0.85 -0.8
1,235,775 + RR41_RS05920 0.85 -2.6
1,235,775 + RR41_RS05920 0.85 -1.8
1,235,790 + RR41_RS05920 0.86 +0.2
1,235,790 + RR41_RS05920 0.86 +1.2
1,235,799 + RR41_RS05920 0.87 -0.8
1,235,799 + RR41_RS05920 0.87 -0.8
1,235,799 + RR41_RS05920 0.87 -1.3
1,235,799 + RR41_RS05920 0.87 -1.3
1,235,799 + RR41_RS05920 0.87 -2.1
1,235,800 - RR41_RS05920 0.87 -0.2
1,235,804 - RR41_RS05920 0.87 -0.3
1,235,838 + RR41_RS05920 0.89 +1.8
1,235,839 - RR41_RS05920 0.89 -1.1
1,235,848 + RR41_RS05920 0.90 +1.2
1,235,848 + RR41_RS05920 0.90 -0.3
1,235,859 + -0.9
1,236,033 - -0.5
1,236,051 + +0.4
1,236,079 + RR41_RS05925 0.14 -0.6
1,236,137 + RR41_RS05925 0.26 -2.3
1,236,137 + RR41_RS05925 0.26 +0.7
1,236,137 + RR41_RS05925 0.26 -2.1
1,236,138 - RR41_RS05925 0.26 +1.2
1,236,142 - RR41_RS05925 0.27 -2.6
1,236,159 + RR41_RS05925 0.30 -0.3
1,236,176 + RR41_RS05925 0.34 -2.1
1,236,298 + RR41_RS05925 0.59 +0.4
1,236,362 - RR41_RS05925 0.72 +0.2
1,236,384 + RR41_RS05925 0.76 -2.1
1,236,403 + RR41_RS05925 0.80 -0.8
1,236,403 + RR41_RS05925 0.80 -1.3
1,236,403 + RR41_RS05925 0.80 -2.3
1,236,404 - RR41_RS05925 0.80 -2.1
1,236,404 - RR41_RS05925 0.80 -1.3
1,236,662 + RR41_RS05930 0.27 +0.2
1,236,662 + RR41_RS05930 0.27 +0.2
1,236,663 - RR41_RS05930 0.28 +1.0
1,236,706 + RR41_RS05930 0.34 +1.2
1,236,845 + RR41_RS05930 0.57 -0.8
1,236,846 - RR41_RS05930 0.57 -0.8
1,236,854 - RR41_RS05930 0.58 -1.5
1,236,960 + RR41_RS05930 0.75 -1.5
1,237,037 + RR41_RS05930 0.88 +1.5
1,237,037 + RR41_RS05930 0.88 +1.2
1,237,037 + RR41_RS05930 0.88 -3.2
1,237,037 + RR41_RS05930 0.88 -1.8
1,237,037 + RR41_RS05930 0.88 +1.1
1,237,038 - RR41_RS05930 0.88 +0.2
1,237,038 - RR41_RS05930 0.88 -0.8
1,237,038 - RR41_RS05930 0.88 +1.6
1,237,161 - +0.7
1,237,180 + -0.8
1,237,218 + RR41_RS05935 0.10 -1.8
1,237,266 - RR41_RS05935 0.16 +3.1
1,237,320 + RR41_RS05935 0.22 -0.0
1,237,320 + RR41_RS05935 0.22 +0.2
1,237,320 + RR41_RS05935 0.22 -0.4
1,237,347 - RR41_RS05935 0.25 +2.2
1,237,351 - RR41_RS05935 0.25 -0.8
1,237,351 - RR41_RS05935 0.25 -0.3
1,237,359 + RR41_RS05935 0.26 +0.2
1,237,360 - RR41_RS05935 0.26 +0.2
1,237,376 + RR41_RS05935 0.28 +1.8
1,237,435 + RR41_RS05935 0.34 -0.8
1,237,436 - RR41_RS05935 0.34 +0.7
1,237,482 + RR41_RS05935 0.40 +0.5
1,237,482 + RR41_RS05935 0.40 +0.1
1,237,483 - RR41_RS05935 0.40 +0.2
1,237,483 - RR41_RS05935 0.40 -1.2
1,237,486 + RR41_RS05935 0.40 -2.1

Or see this region's nucleotide sequence