Experiment: RPMI_TSB_serum temperature; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04120 and RR41_RS04125 are separated by 81 nucleotides RR41_RS04125 and RR41_RS04130 are separated by 55 nucleotides RR41_RS04130 and RR41_RS04135 are separated by 121 nucleotides RR41_RS04135 and RR41_RS04140 are separated by 112 nucleotides
RR41_RS04120: RR41_RS04120 - metalloprotease, at 846,423 to 847,139
_RS04120
RR41_RS04125: RR41_RS04125 - MGMT family protein, at 847,221 to 847,550
_RS04125
RR41_RS04130: RR41_RS04130 - universal stress protein, at 847,606 to 848,043
_RS04130
RR41_RS04135: RR41_RS04135 - CatB-related O-acetyltransferase, at 848,165 to 848,797
_RS04135
RR41_RS04140: RR41_RS04140 - RidA family protein, at 848,910 to 849,302
_RS04140
Position (kb) 847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 846.609 kb on - strand, within RR41_RS04120 at 846.609 kb on - strand, within RR41_RS04120 at 846.621 kb on - strand, within RR41_RS04120 at 846.631 kb on - strand, within RR41_RS04120 at 846.691 kb on - strand, within RR41_RS04120 at 846.691 kb on - strand, within RR41_RS04120 at 846.749 kb on + strand, within RR41_RS04120 at 846.776 kb on + strand, within RR41_RS04120 at 846.776 kb on + strand, within RR41_RS04120 at 846.776 kb on + strand, within RR41_RS04120 at 846.776 kb on + strand, within RR41_RS04120 at 846.777 kb on - strand, within RR41_RS04120 at 846.777 kb on - strand, within RR41_RS04120 at 846.777 kb on - strand, within RR41_RS04120 at 846.795 kb on - strand, within RR41_RS04120 at 846.803 kb on + strand, within RR41_RS04120 at 846.876 kb on - strand, within RR41_RS04120 at 846.876 kb on - strand, within RR41_RS04120 at 846.877 kb on + strand, within RR41_RS04120 at 846.878 kb on - strand, within RR41_RS04120 at 846.878 kb on - strand, within RR41_RS04120 at 846.929 kb on - strand, within RR41_RS04120 at 846.967 kb on + strand, within RR41_RS04120 at 846.971 kb on + strand, within RR41_RS04120 at 846.996 kb on - strand, within RR41_RS04120 at 847.001 kb on + strand, within RR41_RS04120 at 847.048 kb on - strand, within RR41_RS04120 at 847.088 kb on + strand at 847.089 kb on - strand at 847.104 kb on + strand at 847.129 kb on - strand at 847.175 kb on - strand at 847.196 kb on + strand at 847.196 kb on + strand at 847.196 kb on + strand at 847.197 kb on - strand at 847.207 kb on + strand at 847.208 kb on - strand at 847.220 kb on + strand at 847.253 kb on - strand at 847.336 kb on + strand, within RR41_RS04125 at 847.354 kb on + strand, within RR41_RS04125 at 847.355 kb on - strand, within RR41_RS04125 at 847.363 kb on - strand, within RR41_RS04125 at 847.370 kb on + strand, within RR41_RS04125 at 847.413 kb on - strand, within RR41_RS04125 at 847.416 kb on - strand, within RR41_RS04125 at 847.477 kb on + strand, within RR41_RS04125 at 847.519 kb on + strand at 847.559 kb on + strand at 847.578 kb on + strand at 847.578 kb on + strand at 847.578 kb on + strand at 847.583 kb on + strand at 847.583 kb on + strand at 847.588 kb on + strand at 847.789 kb on + strand, within RR41_RS04130 at 847.847 kb on + strand, within RR41_RS04130 at 847.848 kb on - strand, within RR41_RS04130 at 847.855 kb on - strand, within RR41_RS04130 at 847.855 kb on - strand, within RR41_RS04130 at 847.926 kb on + strand, within RR41_RS04130 at 847.926 kb on + strand, within RR41_RS04130 at 847.933 kb on + strand, within RR41_RS04130 at 847.996 kb on - strand, within RR41_RS04130 at 847.996 kb on - strand, within RR41_RS04130 at 848.037 kb on - strand at 848.039 kb on - strand at 848.071 kb on + strand at 848.083 kb on - strand at 848.089 kb on + strand at 848.089 kb on + strand at 848.101 kb on + strand at 848.159 kb on + strand at 848.161 kb on + strand at 848.162 kb on - strand at 848.162 kb on - strand at 848.166 kb on + strand at 848.207 kb on + strand at 848.207 kb on + strand at 848.207 kb on + strand at 848.207 kb on + strand at 848.207 kb on + strand at 848.207 kb on + strand at 848.208 kb on - strand at 848.208 kb on - strand at 848.208 kb on - strand at 848.208 kb on - strand at 848.210 kb on - strand at 848.223 kb on - strand at 848.313 kb on + strand, within RR41_RS04135 at 848.317 kb on + strand, within RR41_RS04135 at 848.468 kb on - strand, within RR41_RS04135 at 848.587 kb on + strand, within RR41_RS04135 at 848.595 kb on + strand, within RR41_RS04135 at 848.595 kb on + strand, within RR41_RS04135 at 848.596 kb on - strand, within RR41_RS04135 at 848.624 kb on - strand, within RR41_RS04135 at 848.639 kb on + strand, within RR41_RS04135 at 848.639 kb on + strand, within RR41_RS04135 at 848.640 kb on - strand, within RR41_RS04135 at 848.652 kb on - strand, within RR41_RS04135 at 848.692 kb on - strand, within RR41_RS04135 at 848.692 kb on - strand, within RR41_RS04135 at 848.697 kb on + strand, within RR41_RS04135 at 848.697 kb on + strand, within RR41_RS04135 at 848.697 kb on + strand, within RR41_RS04135 at 848.708 kb on - strand, within RR41_RS04135 at 848.708 kb on - strand, within RR41_RS04135 at 848.710 kb on + strand, within RR41_RS04135 at 848.784 kb on - strand at 848.822 kb on - strand at 848.829 kb on + strand at 848.887 kb on - strand at 848.889 kb on + strand at 848.890 kb on - strand at 848.902 kb on - strand at 848.911 kb on + strand at 848.915 kb on + strand at 848.915 kb on + strand at 848.915 kb on + strand at 848.927 kb on + strand at 848.927 kb on + strand at 849.035 kb on + strand, within RR41_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 30C remove 846,609 - RR41_RS04120 0.26 -0.2 846,609 - RR41_RS04120 0.26 -0.7 846,621 - RR41_RS04120 0.28 -0.2 846,631 - RR41_RS04120 0.29 -0.2 846,691 - RR41_RS04120 0.37 -0.9 846,691 - RR41_RS04120 0.37 +0.4 846,749 + RR41_RS04120 0.45 +0.1 846,776 + RR41_RS04120 0.49 -3.0 846,776 + RR41_RS04120 0.49 -2.9 846,776 + RR41_RS04120 0.49 -1.4 846,776 + RR41_RS04120 0.49 -1.4 846,777 - RR41_RS04120 0.49 +0.1 846,777 - RR41_RS04120 0.49 -0.2 846,777 - RR41_RS04120 0.49 -0.4 846,795 - RR41_RS04120 0.52 -2.7 846,803 + RR41_RS04120 0.53 -1.0 846,876 - RR41_RS04120 0.63 -1.7 846,876 - RR41_RS04120 0.63 -1.4 846,877 + RR41_RS04120 0.63 +0.1 846,878 - RR41_RS04120 0.63 +0.1 846,878 - RR41_RS04120 0.63 -0.3 846,929 - RR41_RS04120 0.71 -1.2 846,967 + RR41_RS04120 0.76 -1.2 846,971 + RR41_RS04120 0.76 -2.4 846,996 - RR41_RS04120 0.80 -2.7 847,001 + RR41_RS04120 0.81 -1.9 847,048 - RR41_RS04120 0.87 +0.1 847,088 + -0.7 847,089 - -2.4 847,104 + -1.2 847,129 - +2.1 847,175 - -1.4 847,196 + -1.7 847,196 + +0.6 847,196 + -0.9 847,197 - -2.2 847,207 + -0.1 847,208 - -1.4 847,220 + -3.7 847,253 - -0.4 847,336 + RR41_RS04125 0.35 -0.3 847,354 + RR41_RS04125 0.40 +1.1 847,355 - RR41_RS04125 0.41 -2.2 847,363 - RR41_RS04125 0.43 -3.0 847,370 + RR41_RS04125 0.45 -3.2 847,413 - RR41_RS04125 0.58 -0.4 847,416 - RR41_RS04125 0.59 -2.4 847,477 + RR41_RS04125 0.78 -2.4 847,519 + +1.9 847,559 + -2.9 847,578 + -1.9 847,578 + -0.3 847,578 + -2.7 847,583 + -0.4 847,583 + -1.4 847,588 + -1.4 847,789 + RR41_RS04130 0.42 -3.2 847,847 + RR41_RS04130 0.55 -2.7 847,848 - RR41_RS04130 0.55 +0.1 847,855 - RR41_RS04130 0.57 +0.1 847,855 - RR41_RS04130 0.57 -0.9 847,926 + RR41_RS04130 0.73 -1.4 847,926 + RR41_RS04130 0.73 -1.4 847,933 + RR41_RS04130 0.75 -1.4 847,996 - RR41_RS04130 0.89 +0.1 847,996 - RR41_RS04130 0.89 -0.2 848,037 - +0.7 848,039 - +1.5 848,071 + -2.4 848,083 - -0.4 848,089 + -0.3 848,089 + -0.9 848,101 + -0.6 848,159 + -0.8 848,161 + +3.3 848,162 - +1.0 848,162 - -2.1 848,166 + -2.2 848,207 + +0.2 848,207 + -1.3 848,207 + -1.8 848,207 + -2.4 848,207 + -2.4 848,207 + -0.8 848,208 - -1.3 848,208 - +1.7 848,208 - +0.2 848,208 - +1.5 848,210 - -1.6 848,223 - +0.2 848,313 + RR41_RS04135 0.23 +0.2 848,317 + RR41_RS04135 0.24 -0.8 848,468 - RR41_RS04135 0.48 -2.2 848,587 + RR41_RS04135 0.67 +0.7 848,595 + RR41_RS04135 0.68 +1.7 848,595 + RR41_RS04135 0.68 +0.4 848,596 - RR41_RS04135 0.68 -0.5 848,624 - RR41_RS04135 0.73 +3.0 848,639 + RR41_RS04135 0.75 -0.8 848,639 + RR41_RS04135 0.75 +0.2 848,640 - RR41_RS04135 0.75 -1.8 848,652 - RR41_RS04135 0.77 +0.6 848,692 - RR41_RS04135 0.83 -0.8 848,692 - RR41_RS04135 0.83 -1.4 848,697 + RR41_RS04135 0.84 +0.2 848,697 + RR41_RS04135 0.84 +0.7 848,697 + RR41_RS04135 0.84 -1.5 848,708 - RR41_RS04135 0.86 +1.2 848,708 - RR41_RS04135 0.86 +0.6 848,710 + RR41_RS04135 0.86 -1.3 848,784 - +0.2 848,822 - -1.4 848,829 + -0.3 848,887 - -0.1 848,889 + -2.4 848,890 - +0.7 848,902 - +1.6 848,911 + +0.2 848,915 + +0.2 848,915 + +0.2 848,915 + +1.1 848,927 + +0.2 848,927 + -0.8 849,035 + RR41_RS04140 0.32 -1.3
Or see this region's nucleotide sequence