Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06754 and MPMX19_06755 are separated by 88 nucleotides MPMX19_06755 and MPMX19_06756 are separated by 44 nucleotides MPMX19_06756 and MPMX19_06757 are separated by 14 nucleotides
MPMX19_06754: MPMX19_06754 - hypothetical protein, at 19,993 to 20,913
_06754
MPMX19_06755: MPMX19_06755 - Hypotaurine/taurine--pyruvate aminotransferase, at 21,002 to 22,399
_06755
MPMX19_06756: MPMX19_06756 - Serine 3-dehydrogenase, at 22,444 to 23,232
_06756
MPMX19_06757: MPMX19_06757 - hypothetical protein, at 23,247 to 24,002
_06757
Position (kb) 21
22
23 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 20.157 kb on + strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.218 kb on - strand, within MPMX19_06754 at 20.367 kb on - strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.680 kb on + strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.759 kb on - strand, within MPMX19_06754 at 20.911 kb on + strand at 20.912 kb on - strand at 21.504 kb on + strand, within MPMX19_06755 at 21.504 kb on + strand, within MPMX19_06755 at 21.505 kb on - strand, within MPMX19_06755 at 21.505 kb on - strand, within MPMX19_06755 at 21.556 kb on - strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.664 kb on - strand, within MPMX19_06755 at 21.786 kb on + strand, within MPMX19_06755 at 21.787 kb on - strand, within MPMX19_06755 at 21.817 kb on - strand, within MPMX19_06755 at 21.924 kb on + strand, within MPMX19_06755 at 21.925 kb on - strand, within MPMX19_06755 at 21.925 kb on - strand, within MPMX19_06755 at 21.925 kb on - strand, within MPMX19_06755 at 21.940 kb on - strand, within MPMX19_06755 at 22.035 kb on + strand, within MPMX19_06755 at 22.035 kb on + strand, within MPMX19_06755 at 22.036 kb on - strand, within MPMX19_06755 at 22.038 kb on + strand, within MPMX19_06755 at 22.038 kb on + strand, within MPMX19_06755 at 22.038 kb on + strand, within MPMX19_06755 at 22.038 kb on + strand, within MPMX19_06755 at 22.039 kb on - strand, within MPMX19_06755 at 22.039 kb on - strand, within MPMX19_06755 at 22.039 kb on - strand, within MPMX19_06755 at 22.122 kb on + strand, within MPMX19_06755 at 22.122 kb on + strand, within MPMX19_06755 at 22.122 kb on + strand, within MPMX19_06755 at 22.122 kb on + strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.123 kb on - strand, within MPMX19_06755 at 22.177 kb on - strand, within MPMX19_06755 at 22.221 kb on + strand, within MPMX19_06755 at 22.221 kb on + strand, within MPMX19_06755 at 22.412 kb on - strand at 22.757 kb on + strand, within MPMX19_06756 at 23.194 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.227 kb on - strand at 23.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 20,157 + MPMX19_06754 0.18 +0.2 20,158 - MPMX19_06754 0.18 -0.1 20,158 - MPMX19_06754 0.18 -0.9 20,158 - MPMX19_06754 0.18 +0.4 20,158 - MPMX19_06754 0.18 -0.0 20,215 + MPMX19_06754 0.24 +1.5 20,215 + MPMX19_06754 0.24 +0.2 20,216 - MPMX19_06754 0.24 +0.2 20,216 - MPMX19_06754 0.24 -0.4 20,216 - MPMX19_06754 0.24 -0.0 20,216 - MPMX19_06754 0.24 -2.1 20,216 - MPMX19_06754 0.24 -0.6 20,218 - MPMX19_06754 0.24 -0.4 20,367 - MPMX19_06754 0.41 -1.8 20,608 + MPMX19_06754 0.67 -0.6 20,608 + MPMX19_06754 0.67 -1.0 20,609 - MPMX19_06754 0.67 -0.1 20,609 - MPMX19_06754 0.67 +0.9 20,609 - MPMX19_06754 0.67 +0.4 20,609 - MPMX19_06754 0.67 -0.8 20,641 + MPMX19_06754 0.70 -0.8 20,641 + MPMX19_06754 0.70 -0.8 20,641 + MPMX19_06754 0.70 +0.3 20,641 + MPMX19_06754 0.70 -0.8 20,641 + MPMX19_06754 0.70 -0.7 20,642 - MPMX19_06754 0.70 -0.5 20,642 - MPMX19_06754 0.70 -1.4 20,680 + MPMX19_06754 0.75 -2.9 20,681 - MPMX19_06754 0.75 -0.6 20,681 - MPMX19_06754 0.75 +0.2 20,758 + MPMX19_06754 0.83 -0.2 20,758 + MPMX19_06754 0.83 +0.4 20,758 + MPMX19_06754 0.83 +0.6 20,759 - MPMX19_06754 0.83 -0.1 20,911 + +0.8 20,912 - +0.7 21,504 + MPMX19_06755 0.36 +1.4 21,504 + MPMX19_06755 0.36 -0.0 21,505 - MPMX19_06755 0.36 -0.1 21,505 - MPMX19_06755 0.36 -0.9 21,556 - MPMX19_06755 0.40 +0.4 21,663 + MPMX19_06755 0.47 -0.3 21,663 + MPMX19_06755 0.47 -1.2 21,663 + MPMX19_06755 0.47 -0.5 21,664 - MPMX19_06755 0.47 -1.6 21,786 + MPMX19_06755 0.56 +0.1 21,787 - MPMX19_06755 0.56 -1.8 21,817 - MPMX19_06755 0.58 +0.4 21,924 + MPMX19_06755 0.66 +1.6 21,925 - MPMX19_06755 0.66 -0.3 21,925 - MPMX19_06755 0.66 +0.8 21,925 - MPMX19_06755 0.66 +0.4 21,940 - MPMX19_06755 0.67 +0.3 22,035 + MPMX19_06755 0.74 +1.4 22,035 + MPMX19_06755 0.74 +0.4 22,036 - MPMX19_06755 0.74 -0.4 22,038 + MPMX19_06755 0.74 +0.1 22,038 + MPMX19_06755 0.74 +0.5 22,038 + MPMX19_06755 0.74 +0.8 22,038 + MPMX19_06755 0.74 +0.8 22,039 - MPMX19_06755 0.74 -0.4 22,039 - MPMX19_06755 0.74 -0.7 22,039 - MPMX19_06755 0.74 -0.9 22,122 + MPMX19_06755 0.80 +0.4 22,122 + MPMX19_06755 0.80 +0.6 22,122 + MPMX19_06755 0.80 -3.1 22,122 + MPMX19_06755 0.80 +0.1 22,123 - MPMX19_06755 0.80 +0.3 22,123 - MPMX19_06755 0.80 +0.1 22,123 - MPMX19_06755 0.80 -0.2 22,123 - MPMX19_06755 0.80 -0.5 22,123 - MPMX19_06755 0.80 +0.6 22,123 - MPMX19_06755 0.80 -0.8 22,123 - MPMX19_06755 0.80 +0.4 22,123 - MPMX19_06755 0.80 +0.5 22,177 - MPMX19_06755 0.84 +0.0 22,221 + MPMX19_06755 0.87 +0.2 22,221 + MPMX19_06755 0.87 +1.4 22,412 - -0.1 22,757 + MPMX19_06756 0.40 -0.3 23,194 + -0.2 23,226 + +1.4 23,226 + -0.5 23,226 + -0.9 23,227 - +0.8 23,227 - +0.9
Or see this region's nucleotide sequence