Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00243 and GEMAOFIL_00244 are separated by 8 nucleotides GEMAOFIL_00244 and GEMAOFIL_00245 are separated by 157 nucleotides GEMAOFIL_00245 and GEMAOFIL_00246 are separated by 115 nucleotides GEMAOFIL_00246 and GEMAOFIL_00247 are separated by 67 nucleotides
GEMAOFIL_00243: GEMAOFIL_00243 - HTH-type transcriptional regulator TrpI, at 281,732 to 282,628
_00243
GEMAOFIL_00244: GEMAOFIL_00244 - putative protein YqjD, at 282,637 to 282,963
_00244
GEMAOFIL_00245: GEMAOFIL_00245 - Dodecin, at 283,121 to 283,336
_00245
GEMAOFIL_00246: GEMAOFIL_00246 - hypothetical protein, at 283,452 to 283,676
_00246
GEMAOFIL_00247: GEMAOFIL_00247 - hypothetical protein, at 283,744 to 284,745
_00247
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1 at 281.648 kb on - strand at 281.970 kb on + strand, within GEMAOFIL_00243 at 282.197 kb on - strand, within GEMAOFIL_00243 at 282.197 kb on - strand, within GEMAOFIL_00243 at 282.343 kb on + strand, within GEMAOFIL_00243 at 282.344 kb on - strand, within GEMAOFIL_00243 at 282.344 kb on - strand, within GEMAOFIL_00243 at 282.344 kb on - strand, within GEMAOFIL_00243 at 282.344 kb on - strand, within GEMAOFIL_00243 at 282.410 kb on + strand, within GEMAOFIL_00243 at 282.410 kb on + strand, within GEMAOFIL_00243 at 282.410 kb on + strand, within GEMAOFIL_00243 at 282.411 kb on - strand, within GEMAOFIL_00243 at 282.414 kb on - strand, within GEMAOFIL_00243 at 282.533 kb on + strand, within GEMAOFIL_00243 at 282.626 kb on + strand at 282.688 kb on + strand, within GEMAOFIL_00244 at 282.688 kb on + strand, within GEMAOFIL_00244 at 282.689 kb on - strand, within GEMAOFIL_00244 at 282.705 kb on + strand, within GEMAOFIL_00244 at 282.998 kb on + strand at 282.998 kb on + strand at 282.998 kb on + strand at 282.998 kb on + strand at 282.999 kb on - strand at 282.999 kb on - strand at 282.999 kb on - strand at 283.003 kb on - strand at 283.072 kb on + strand at 283.088 kb on + strand at 283.095 kb on + strand at 283.120 kb on + strand at 283.120 kb on + strand at 283.120 kb on + strand at 283.121 kb on - strand at 283.139 kb on + strand at 283.245 kb on - strand, within GEMAOFIL_00245 at 283.330 kb on + strand at 283.330 kb on + strand at 283.330 kb on + strand at 283.330 kb on + strand at 283.331 kb on - strand at 283.374 kb on - strand at 283.447 kb on - strand at 283.474 kb on + strand at 283.474 kb on + strand at 283.474 kb on + strand at 283.632 kb on - strand, within GEMAOFIL_00246 at 283.662 kb on + strand at 283.663 kb on - strand at 283.694 kb on - strand at 283.802 kb on + strand at 283.802 kb on + strand at 283.815 kb on + strand at 283.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 281,648 - +0.2 281,970 + GEMAOFIL_00243 0.27 +0.6 282,197 - GEMAOFIL_00243 0.52 +0.9 282,197 - GEMAOFIL_00243 0.52 -0.5 282,343 + GEMAOFIL_00243 0.68 -0.8 282,344 - GEMAOFIL_00243 0.68 +0.5 282,344 - GEMAOFIL_00243 0.68 +0.6 282,344 - GEMAOFIL_00243 0.68 -2.4 282,344 - GEMAOFIL_00243 0.68 +0.1 282,410 + GEMAOFIL_00243 0.76 +1.0 282,410 + GEMAOFIL_00243 0.76 -0.1 282,410 + GEMAOFIL_00243 0.76 -0.3 282,411 - GEMAOFIL_00243 0.76 +0.5 282,414 - GEMAOFIL_00243 0.76 -0.2 282,533 + GEMAOFIL_00243 0.89 -0.6 282,626 + +0.3 282,688 + GEMAOFIL_00244 0.16 -0.1 282,688 + GEMAOFIL_00244 0.16 -0.4 282,689 - GEMAOFIL_00244 0.16 -1.4 282,705 + GEMAOFIL_00244 0.21 +0.6 282,998 + +0.2 282,998 + -0.0 282,998 + -0.5 282,998 + +0.2 282,999 - +0.3 282,999 - -0.0 282,999 - -0.4 283,003 - +0.3 283,072 + -0.7 283,088 + +0.9 283,095 + +0.3 283,120 + +0.9 283,120 + +0.0 283,120 + -0.3 283,121 - +0.6 283,139 + -0.5 283,245 - GEMAOFIL_00245 0.57 +0.5 283,330 + +1.5 283,330 + -0.3 283,330 + +0.1 283,330 + +0.8 283,331 - -0.2 283,374 - -0.2 283,447 - +0.4 283,474 + -0.2 283,474 + +0.2 283,474 + -0.3 283,632 - GEMAOFIL_00246 0.80 +0.2 283,662 + +0.4 283,663 - -0.5 283,694 - +1.0 283,802 + +0.3 283,802 + +0.2 283,815 + -0.5 283,816 - -0.9
Or see this region's nucleotide sequence