Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03962

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03960 and MPMX19_03961 are separated by 20 nucleotidesMPMX19_03961 and MPMX19_03962 are separated by 50 nucleotidesMPMX19_03962 and MPMX19_03963 are separated by 20 nucleotides MPMX19_03960: MPMX19_03960 - Beta-lactamase OXY-2, at 248,450 to 249,355 _03960 MPMX19_03961: MPMX19_03961 - hypothetical protein, at 249,376 to 249,612 _03961 MPMX19_03962: MPMX19_03962 - hypothetical protein, at 249,663 to 250,154 _03962 MPMX19_03963: MPMX19_03963 - hypothetical protein, at 250,175 to 252,220 _03963 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1at 249.269 kb on + strandat 249.269 kb on + strandat 249.269 kb on + strandat 249.270 kb on - strandat 249.270 kb on - strandat 249.270 kb on - strandat 249.270 kb on - strandat 249.270 kb on - strandat 249.270 kb on - strandat 249.281 kb on - strandat 249.364 kb on + strandat 249.364 kb on + strandat 249.364 kb on + strandat 249.365 kb on - strandat 249.365 kb on - strandat 249.365 kb on - strandat 249.365 kb on - strandat 249.365 kb on - strandat 249.715 kb on + strand, within MPMX19_03962at 249.716 kb on - strand, within MPMX19_03962at 249.716 kb on - strand, within MPMX19_03962at 249.835 kb on + strand, within MPMX19_03962at 249.835 kb on + strand, within MPMX19_03962at 249.835 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.838 kb on + strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.839 kb on - strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.868 kb on + strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 249.869 kb on - strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.027 kb on + strand, within MPMX19_03962at 250.028 kb on - strand, within MPMX19_03962at 250.028 kb on - strand, within MPMX19_03962at 250.028 kb on - strand, within MPMX19_03962at 250.330 kb on - strandat 250.675 kb on + strand, within MPMX19_03963at 250.675 kb on + strand, within MPMX19_03963at 250.676 kb on - strand, within MPMX19_03963at 250.676 kb on - strand, within MPMX19_03963at 250.812 kb on + strand, within MPMX19_03963at 250.812 kb on + strand, within MPMX19_03963at 250.812 kb on + strand, within MPMX19_03963at 250.812 kb on + strand, within MPMX19_03963at 250.813 kb on - strand, within MPMX19_03963at 250.813 kb on - strand, within MPMX19_03963at 250.813 kb on - strand, within MPMX19_03963at 250.857 kb on + strand, within MPMX19_03963at 250.857 kb on + strand, within MPMX19_03963at 250.857 kb on + strand, within MPMX19_03963at 250.858 kb on - strand, within MPMX19_03963

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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249,269 + -0.3
249,269 + -0.7
249,269 + -1.1
249,270 - -0.1
249,270 - -0.6
249,270 - -0.2
249,270 - -2.4
249,270 - +0.6
249,270 - -0.7
249,281 - -1.0
249,364 + -0.7
249,364 + +0.3
249,364 + +0.6
249,365 - -0.6
249,365 - -1.5
249,365 - -0.4
249,365 - -0.1
249,365 - -1.1
249,715 + MPMX19_03962 0.11 +0.6
249,716 - MPMX19_03962 0.11 -1.0
249,716 - MPMX19_03962 0.11 -0.6
249,835 + MPMX19_03962 0.35 -0.4
249,835 + MPMX19_03962 0.35 -0.2
249,835 + MPMX19_03962 0.35 -0.4
249,838 + MPMX19_03962 0.36 -0.2
249,838 + MPMX19_03962 0.36 +0.2
249,838 + MPMX19_03962 0.36 +0.0
249,838 + MPMX19_03962 0.36 -0.7
249,838 + MPMX19_03962 0.36 -0.4
249,838 + MPMX19_03962 0.36 -1.2
249,838 + MPMX19_03962 0.36 +0.1
249,839 - MPMX19_03962 0.36 -0.4
249,839 - MPMX19_03962 0.36 +0.6
249,839 - MPMX19_03962 0.36 -0.7
249,839 - MPMX19_03962 0.36 -0.5
249,839 - MPMX19_03962 0.36 -1.1
249,839 - MPMX19_03962 0.36 -0.4
249,868 + MPMX19_03962 0.42 +0.3
249,868 + MPMX19_03962 0.42 -2.0
249,868 + MPMX19_03962 0.42 -0.3
249,868 + MPMX19_03962 0.42 -1.0
249,868 + MPMX19_03962 0.42 -0.7
249,868 + MPMX19_03962 0.42 -0.5
249,868 + MPMX19_03962 0.42 -0.4
249,868 + MPMX19_03962 0.42 -0.3
249,869 - MPMX19_03962 0.42 -1.7
249,869 - MPMX19_03962 0.42 +0.0
249,869 - MPMX19_03962 0.42 -0.6
249,869 - MPMX19_03962 0.42 -0.6
249,869 - MPMX19_03962 0.42 -0.3
249,869 - MPMX19_03962 0.42 -1.2
249,869 - MPMX19_03962 0.42 +1.3
249,869 - MPMX19_03962 0.42 +1.6
249,869 - MPMX19_03962 0.42 +1.2
250,027 + MPMX19_03962 0.74 -1.2
250,027 + MPMX19_03962 0.74 -0.2
250,027 + MPMX19_03962 0.74 -0.3
250,027 + MPMX19_03962 0.74 -1.1
250,027 + MPMX19_03962 0.74 -1.4
250,027 + MPMX19_03962 0.74 +0.2
250,027 + MPMX19_03962 0.74 -0.2
250,027 + MPMX19_03962 0.74 +1.1
250,027 + MPMX19_03962 0.74 -0.4
250,027 + MPMX19_03962 0.74 -0.8
250,027 + MPMX19_03962 0.74 -0.7
250,028 - MPMX19_03962 0.74 -1.5
250,028 - MPMX19_03962 0.74 -1.2
250,028 - MPMX19_03962 0.74 +0.8
250,330 - -1.4
250,675 + MPMX19_03963 0.24 +0.7
250,675 + MPMX19_03963 0.24 +0.1
250,676 - MPMX19_03963 0.24 -1.3
250,676 - MPMX19_03963 0.24 -1.2
250,812 + MPMX19_03963 0.31 +0.7
250,812 + MPMX19_03963 0.31 +1.1
250,812 + MPMX19_03963 0.31 -1.5
250,812 + MPMX19_03963 0.31 -0.7
250,813 - MPMX19_03963 0.31 -0.9
250,813 - MPMX19_03963 0.31 -1.5
250,813 - MPMX19_03963 0.31 -2.3
250,857 + MPMX19_03963 0.33 -1.1
250,857 + MPMX19_03963 0.33 +0.5
250,857 + MPMX19_03963 0.33 -1.4
250,858 - MPMX19_03963 0.33 +0.4

Or see this region's nucleotide sequence