Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02255

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02253 and MPMX20_02254 are separated by 9 nucleotidesMPMX20_02254 and MPMX20_02255 are separated by 52 nucleotidesMPMX20_02255 and MPMX20_02256 are separated by 48 nucleotides MPMX20_02253: MPMX20_02253 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,180 to 2,366,977 _02253 MPMX20_02254: MPMX20_02254 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,987 to 2,367,685 _02254 MPMX20_02255: MPMX20_02255 - Metal-binding protein ZinT, at 2,367,738 to 2,368,376 _02255 MPMX20_02256: MPMX20_02256 - Na(+), Li(+), K(+)/H(+) antiporter, at 2,368,425 to 2,369,618 _02256 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.811 kb on - strand, within MPMX20_02253at 2366.837 kb on - strand, within MPMX20_02253at 2366.919 kb on + strandat 2366.928 kb on + strandat 2366.950 kb on + strandat 2366.974 kb on + strandat 2366.974 kb on + strandat 2367.003 kb on + strandat 2367.027 kb on + strandat 2367.123 kb on - strand, within MPMX20_02254at 2367.123 kb on - strand, within MPMX20_02254at 2367.131 kb on + strand, within MPMX20_02254at 2367.187 kb on + strand, within MPMX20_02254at 2367.220 kb on + strand, within MPMX20_02254at 2367.271 kb on - strand, within MPMX20_02254at 2367.324 kb on - strand, within MPMX20_02254at 2367.514 kb on + strand, within MPMX20_02254at 2367.576 kb on + strand, within MPMX20_02254at 2367.587 kb on + strand, within MPMX20_02254at 2367.587 kb on + strand, within MPMX20_02254at 2367.628 kb on + strandat 2367.635 kb on - strandat 2367.637 kb on + strandat 2367.645 kb on - strandat 2367.782 kb on + strandat 2367.790 kb on + strandat 2367.790 kb on - strandat 2367.793 kb on - strandat 2367.797 kb on + strandat 2367.798 kb on - strandat 2367.845 kb on - strand, within MPMX20_02255at 2367.901 kb on + strand, within MPMX20_02255at 2367.902 kb on + strand, within MPMX20_02255at 2368.008 kb on + strand, within MPMX20_02255at 2368.031 kb on - strand, within MPMX20_02255at 2368.083 kb on + strand, within MPMX20_02255at 2368.089 kb on + strand, within MPMX20_02255at 2368.190 kb on - strand, within MPMX20_02255at 2368.268 kb on + strand, within MPMX20_02255at 2368.292 kb on + strand, within MPMX20_02255at 2368.350 kb on + strandat 2368.391 kb on - strandat 2368.454 kb on + strandat 2368.528 kb on - strandat 2368.547 kb on + strand, within MPMX20_02256at 2368.547 kb on + strand, within MPMX20_02256at 2368.547 kb on + strand, within MPMX20_02256at 2368.555 kb on - strand, within MPMX20_02256at 2368.652 kb on + strand, within MPMX20_02256at 2368.678 kb on + strand, within MPMX20_02256at 2368.686 kb on - strand, within MPMX20_02256at 2368.686 kb on - strand, within MPMX20_02256at 2368.717 kb on - strand, within MPMX20_02256at 2368.739 kb on + strand, within MPMX20_02256at 2368.739 kb on + strand, within MPMX20_02256at 2368.747 kb on - strand, within MPMX20_02256at 2368.772 kb on - strand, within MPMX20_02256at 2368.804 kb on - strand, within MPMX20_02256at 2368.995 kb on - strand, within MPMX20_02256at 2369.013 kb on - strand, within MPMX20_02256at 2369.015 kb on + strand, within MPMX20_02256at 2369.023 kb on - strand, within MPMX20_02256at 2369.023 kb on - strand, within MPMX20_02256at 2369.145 kb on + strand, within MPMX20_02256at 2369.151 kb on - strand, within MPMX20_02256at 2369.161 kb on - strand, within MPMX20_02256at 2369.168 kb on - strand, within MPMX20_02256at 2369.241 kb on + strand, within MPMX20_02256at 2369.257 kb on + strand, within MPMX20_02256at 2369.260 kb on - strand, within MPMX20_02256at 2369.265 kb on + strand, within MPMX20_02256at 2369.265 kb on + strand, within MPMX20_02256at 2369.329 kb on - strand, within MPMX20_02256at 2369.335 kb on + strand, within MPMX20_02256

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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2,366,801 - MPMX20_02253 0.78 +0.2
2,366,801 - MPMX20_02253 0.78 -1.9
2,366,801 - MPMX20_02253 0.78 -0.1
2,366,803 + MPMX20_02253 0.78 +0.0
2,366,803 + MPMX20_02253 0.78 +0.2
2,366,803 + MPMX20_02253 0.78 -0.4
2,366,803 + MPMX20_02253 0.78 -1.5
2,366,803 + MPMX20_02253 0.78 +0.6
2,366,811 - MPMX20_02253 0.79 +0.4
2,366,837 - MPMX20_02253 0.82 -1.0
2,366,919 + -2.1
2,366,928 + -0.5
2,366,950 + -0.7
2,366,974 + +0.7
2,366,974 + +0.1
2,367,003 + -0.7
2,367,027 + -0.6
2,367,123 - MPMX20_02254 0.19 -1.6
2,367,123 - MPMX20_02254 0.19 -1.6
2,367,131 + MPMX20_02254 0.21 +0.2
2,367,187 + MPMX20_02254 0.29 -1.1
2,367,220 + MPMX20_02254 0.33 +0.5
2,367,271 - MPMX20_02254 0.41 -0.6
2,367,324 - MPMX20_02254 0.48 -0.9
2,367,514 + MPMX20_02254 0.75 -0.8
2,367,576 + MPMX20_02254 0.84 -0.2
2,367,587 + MPMX20_02254 0.86 -1.9
2,367,587 + MPMX20_02254 0.86 +0.7
2,367,628 + -0.3
2,367,635 - +0.5
2,367,637 + +0.4
2,367,645 - +1.1
2,367,782 + +0.6
2,367,790 + +0.6
2,367,790 - -0.7
2,367,793 - -0.0
2,367,797 + -0.4
2,367,798 - -0.1
2,367,845 - MPMX20_02255 0.17 -2.1
2,367,901 + MPMX20_02255 0.26 +1.8
2,367,902 + MPMX20_02255 0.26 -0.2
2,368,008 + MPMX20_02255 0.42 -0.4
2,368,031 - MPMX20_02255 0.46 -1.0
2,368,083 + MPMX20_02255 0.54 -1.4
2,368,089 + MPMX20_02255 0.55 +0.1
2,368,190 - MPMX20_02255 0.71 -1.3
2,368,268 + MPMX20_02255 0.83 -0.2
2,368,292 + MPMX20_02255 0.87 -3.4
2,368,350 + +0.4
2,368,391 - +0.1
2,368,454 + -1.6
2,368,528 - -1.6
2,368,547 + MPMX20_02256 0.10 -1.2
2,368,547 + MPMX20_02256 0.10 +0.2
2,368,547 + MPMX20_02256 0.10 +0.0
2,368,555 - MPMX20_02256 0.11 -1.2
2,368,652 + MPMX20_02256 0.19 +0.2
2,368,678 + MPMX20_02256 0.21 -0.1
2,368,686 - MPMX20_02256 0.22 +0.3
2,368,686 - MPMX20_02256 0.22 +0.2
2,368,717 - MPMX20_02256 0.24 -0.9
2,368,739 + MPMX20_02256 0.26 -0.4
2,368,739 + MPMX20_02256 0.26 -0.6
2,368,747 - MPMX20_02256 0.27 +1.0
2,368,772 - MPMX20_02256 0.29 +1.5
2,368,804 - MPMX20_02256 0.32 +0.3
2,368,995 - MPMX20_02256 0.48 +0.6
2,369,013 - MPMX20_02256 0.49 +0.7
2,369,015 + MPMX20_02256 0.49 -0.2
2,369,023 - MPMX20_02256 0.50 -1.5
2,369,023 - MPMX20_02256 0.50 +0.2
2,369,145 + MPMX20_02256 0.60 +1.3
2,369,151 - MPMX20_02256 0.61 +0.2
2,369,161 - MPMX20_02256 0.62 +0.3
2,369,168 - MPMX20_02256 0.62 +0.5
2,369,241 + MPMX20_02256 0.68 -1.4
2,369,257 + MPMX20_02256 0.70 -0.3
2,369,260 - MPMX20_02256 0.70 -1.9
2,369,265 + MPMX20_02256 0.70 -0.2
2,369,265 + MPMX20_02256 0.70 +0.1
2,369,329 - MPMX20_02256 0.76 +0.5
2,369,335 + MPMX20_02256 0.76 -1.0

Or see this region's nucleotide sequence