Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03269 and MPMX19_03270 are separated by 63 nucleotides MPMX19_03270 and MPMX19_03271 overlap by 4 nucleotides
MPMX19_03269: MPMX19_03269 - hypothetical protein, at 612,914 to 614,197
_03269
MPMX19_03270: MPMX19_03270 - Lactose transport system permease protein LacF, at 614,261 to 615,292
_03270
MPMX19_03271: MPMX19_03271 - hypothetical protein, at 615,289 to 616,344
_03271
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.311 kb on - strand, within MPMX19_03269 at 613.311 kb on - strand, within MPMX19_03269 at 613.349 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.695 kb on - strand, within MPMX19_03269 at 613.871 kb on + strand, within MPMX19_03269 at 613.871 kb on + strand, within MPMX19_03269 at 613.872 kb on - strand, within MPMX19_03269 at 613.872 kb on - strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.961 kb on + strand, within MPMX19_03269 at 613.961 kb on + strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 614.039 kb on + strand, within MPMX19_03269 at 614.138 kb on + strand at 614.138 kb on + strand at 614.139 kb on - strand at 614.139 kb on - strand at 614.139 kb on - strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.270 kb on - strand at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.159 kb on - strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.815 kb on - strand, within MPMX19_03271 at 615.898 kb on + strand, within MPMX19_03271 at 615.899 kb on - strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.240 kb on + strand at 616.240 kb on + strand at 616.240 kb on + strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 613,310 + MPMX19_03269 0.31 -0.4 613,310 + MPMX19_03269 0.31 -0.4 613,310 + MPMX19_03269 0.31 +0.3 613,310 + MPMX19_03269 0.31 -0.0 613,311 - MPMX19_03269 0.31 -1.1 613,311 - MPMX19_03269 0.31 -1.3 613,349 + MPMX19_03269 0.34 +1.4 613,694 + MPMX19_03269 0.61 +0.5 613,694 + MPMX19_03269 0.61 +1.7 613,694 + MPMX19_03269 0.61 -0.0 613,694 + MPMX19_03269 0.61 -0.5 613,695 - MPMX19_03269 0.61 -0.9 613,871 + MPMX19_03269 0.75 -1.0 613,871 + MPMX19_03269 0.75 +0.1 613,872 - MPMX19_03269 0.75 -1.4 613,872 - MPMX19_03269 0.75 -0.1 613,904 + MPMX19_03269 0.77 +0.5 613,904 + MPMX19_03269 0.77 -0.1 613,904 + MPMX19_03269 0.77 +0.7 613,904 + MPMX19_03269 0.77 +0.8 613,904 + MPMX19_03269 0.77 -2.8 613,904 + MPMX19_03269 0.77 -0.3 613,905 - MPMX19_03269 0.77 +0.2 613,905 - MPMX19_03269 0.77 +0.9 613,905 - MPMX19_03269 0.77 -0.5 613,905 - MPMX19_03269 0.77 -1.5 613,905 - MPMX19_03269 0.77 -0.3 613,905 - MPMX19_03269 0.77 +0.1 613,905 - MPMX19_03269 0.77 +0.7 613,961 + MPMX19_03269 0.82 +0.4 613,961 + MPMX19_03269 0.82 +0.1 613,962 - MPMX19_03269 0.82 +0.5 613,962 - MPMX19_03269 0.82 -2.0 613,962 - MPMX19_03269 0.82 -0.7 613,962 - MPMX19_03269 0.82 +0.5 613,962 - MPMX19_03269 0.82 +1.1 613,962 - MPMX19_03269 0.82 -0.6 614,039 + MPMX19_03269 0.88 +0.4 614,138 + -0.3 614,138 + +0.1 614,139 - -0.2 614,139 - -0.1 614,139 - -0.2 614,269 + -0.3 614,269 + +1.1 614,270 - -0.7 614,414 + MPMX19_03270 0.15 +0.5 614,414 + MPMX19_03270 0.15 -0.8 614,414 + MPMX19_03270 0.15 +0.5 614,414 + MPMX19_03270 0.15 -0.3 614,415 - MPMX19_03270 0.15 -1.0 614,415 - MPMX19_03270 0.15 -0.3 614,415 - MPMX19_03270 0.15 -2.0 614,415 - MPMX19_03270 0.15 -0.2 614,531 + MPMX19_03270 0.26 -0.5 614,531 + MPMX19_03270 0.26 -0.0 614,531 + MPMX19_03270 0.26 -0.1 614,532 - MPMX19_03270 0.26 -1.0 614,532 - MPMX19_03270 0.26 +1.4 614,532 - MPMX19_03270 0.26 -0.7 614,532 - MPMX19_03270 0.26 -0.1 614,532 - MPMX19_03270 0.26 +1.7 614,549 + MPMX19_03270 0.28 -2.5 614,549 + MPMX19_03270 0.28 +0.9 614,550 - MPMX19_03270 0.28 +0.5 614,550 - MPMX19_03270 0.28 -0.5 614,576 + MPMX19_03270 0.31 -0.9 614,576 + MPMX19_03270 0.31 -0.6 614,576 + MPMX19_03270 0.31 -0.0 614,576 + MPMX19_03270 0.31 +1.1 614,576 + MPMX19_03270 0.31 -0.6 614,577 - MPMX19_03270 0.31 +0.7 614,577 - MPMX19_03270 0.31 -0.6 614,577 - MPMX19_03270 0.31 -0.3 614,577 - MPMX19_03270 0.31 -0.7 614,738 + MPMX19_03270 0.46 -1.7 614,738 + MPMX19_03270 0.46 -1.2 614,739 - MPMX19_03270 0.46 +1.0 614,739 - MPMX19_03270 0.46 -1.9 614,739 - MPMX19_03270 0.46 -0.2 614,739 - MPMX19_03270 0.46 -2.1 614,924 + MPMX19_03270 0.64 -0.0 614,924 + MPMX19_03270 0.64 -1.0 614,924 + MPMX19_03270 0.64 -1.2 614,924 + MPMX19_03270 0.64 -0.6 614,924 + MPMX19_03270 0.64 +0.4 614,925 - MPMX19_03270 0.64 -2.1 614,925 - MPMX19_03270 0.64 -0.2 614,925 - MPMX19_03270 0.64 +0.1 614,972 + MPMX19_03270 0.69 -0.3 614,972 + MPMX19_03270 0.69 +0.2 614,973 - MPMX19_03270 0.69 +0.4 614,973 - MPMX19_03270 0.69 +1.1 614,973 - MPMX19_03270 0.69 -0.5 614,973 - MPMX19_03270 0.69 +1.3 614,973 - MPMX19_03270 0.69 -0.9 615,158 + MPMX19_03270 0.87 -1.0 615,158 + MPMX19_03270 0.87 +0.3 615,158 + MPMX19_03270 0.87 -0.2 615,158 + MPMX19_03270 0.87 +0.1 615,158 + MPMX19_03270 0.87 +1.3 615,158 + MPMX19_03270 0.87 -0.8 615,158 + MPMX19_03270 0.87 +0.7 615,158 + MPMX19_03270 0.87 +0.3 615,158 + MPMX19_03270 0.87 -0.4 615,159 - MPMX19_03270 0.87 -0.4 615,164 + MPMX19_03270 0.88 +0.7 615,164 + MPMX19_03270 0.88 -0.7 615,164 + MPMX19_03270 0.88 +0.1 615,164 + MPMX19_03270 0.88 -0.4 615,164 + MPMX19_03270 0.88 +1.0 615,164 + MPMX19_03270 0.88 -1.0 615,164 + MPMX19_03270 0.88 -1.1 615,164 + MPMX19_03270 0.88 -1.4 615,164 + MPMX19_03270 0.88 +0.7 615,164 + MPMX19_03270 0.88 -0.9 615,164 + MPMX19_03270 0.88 -1.0 615,164 + MPMX19_03270 0.88 -0.7 615,164 + MPMX19_03270 0.88 -0.1 615,164 + MPMX19_03270 0.88 -0.5 615,164 + MPMX19_03270 0.88 -1.5 615,165 - MPMX19_03270 0.88 +0.1 615,165 - MPMX19_03270 0.88 +0.7 615,165 - MPMX19_03270 0.88 +0.3 615,165 - MPMX19_03270 0.88 +0.5 615,165 - MPMX19_03270 0.88 +1.3 615,165 - MPMX19_03270 0.88 +0.1 615,165 - MPMX19_03270 0.88 -0.3 615,165 - MPMX19_03270 0.88 -1.5 615,364 + -1.6 615,364 + -0.6 615,364 + -1.4 615,364 + +0.0 615,364 + -0.3 615,364 + -1.5 615,364 + +1.3 615,364 + +0.0 615,364 + +0.0 615,364 + -0.1 615,364 + +0.7 615,364 + +0.4 615,364 + -0.0 615,364 + -1.9 615,365 - -0.8 615,365 - -0.2 615,365 - -0.3 615,365 - -1.1 615,365 - -0.2 615,365 - -1.0 615,365 - +0.0 615,365 - -0.3 615,365 - -0.8 615,365 - -1.1 615,365 - -0.9 615,365 - +0.1 615,365 - +2.1 615,365 - +0.4 615,365 - -0.7 615,365 - -1.6 615,365 - +0.5 615,365 - -0.8 615,365 - -1.1 615,370 + +0.2 615,370 + -1.5 615,370 + -0.8 615,371 - -0.3 615,371 - -0.9 615,371 - -0.2 615,691 + MPMX19_03271 0.38 -0.5 615,691 + MPMX19_03271 0.38 -0.6 615,691 + MPMX19_03271 0.38 +0.4 615,691 + MPMX19_03271 0.38 -1.4 615,691 + MPMX19_03271 0.38 +0.2 615,691 + MPMX19_03271 0.38 -0.0 615,692 - MPMX19_03271 0.38 -1.2 615,692 - MPMX19_03271 0.38 -0.1 615,800 - MPMX19_03271 0.48 -0.3 615,800 - MPMX19_03271 0.48 -1.1 615,800 - MPMX19_03271 0.48 -1.1 615,800 - MPMX19_03271 0.48 +1.0 615,800 - MPMX19_03271 0.48 -0.4 615,815 - MPMX19_03271 0.50 +0.4 615,898 + MPMX19_03271 0.58 -0.7 615,899 - MPMX19_03271 0.58 +0.5 615,994 + MPMX19_03271 0.67 -1.3 615,994 + MPMX19_03271 0.67 -1.6 615,994 + MPMX19_03271 0.67 -1.3 615,994 + MPMX19_03271 0.67 +0.4 615,994 + MPMX19_03271 0.67 +0.7 615,994 + MPMX19_03271 0.67 +1.2 615,995 - MPMX19_03271 0.67 -2.5 615,995 - MPMX19_03271 0.67 -0.4 615,995 - MPMX19_03271 0.67 -0.0 616,063 + MPMX19_03271 0.73 -0.0 616,063 + MPMX19_03271 0.73 -0.8 616,063 + MPMX19_03271 0.73 +1.1 616,064 - MPMX19_03271 0.73 -0.1 616,064 - MPMX19_03271 0.73 -0.8 616,064 - MPMX19_03271 0.73 -1.2 616,064 - MPMX19_03271 0.73 -0.2 616,064 - MPMX19_03271 0.73 +0.2 616,064 - MPMX19_03271 0.73 -0.1 616,240 + -0.6 616,240 + +0.2 616,240 + -0.1 616,241 - +0.0 616,241 - -0.1 616,241 - +0.1 616,241 - -0.3 616,241 - -0.9 616,241 - -0.8 616,241 - +0.0 616,241 - -0.2
Or see this region's nucleotide sequence