Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS07860 and PagCFBP13505_RS07865 are separated by 36 nucleotides PagCFBP13505_RS07865 and PagCFBP13505_RS07870 are separated by 23 nucleotides PagCFBP13505_RS07870 and PagCFBP13505_RS07875 overlap by 4 nucleotides
PagCFBP13505_RS07860: PagCFBP13505_RS07860 - EAL domain-containing protein, at 162,655 to 164,427
_RS07860
PagCFBP13505_RS07865: PagCFBP13505_RS07865 - transporter substrate-binding domain-containing protein, at 164,464 to 165,399
_RS07865
PagCFBP13505_RS07870: PagCFBP13505_RS07870 - ABC transporter permease, at 165,423 to 166,184
_RS07870
PagCFBP13505_RS07875: PagCFBP13505_RS07875 - ABC transporter ATP-binding protein, at 166,181 to 166,921
_RS07875
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.491 kb on + strand, within PagCFBP13505_RS07860 at 163.492 kb on - strand, within PagCFBP13505_RS07860 at 163.492 kb on - strand, within PagCFBP13505_RS07860 at 163.636 kb on + strand, within PagCFBP13505_RS07860 at 163.696 kb on - strand, within PagCFBP13505_RS07860 at 163.711 kb on + strand, within PagCFBP13505_RS07860 at 163.729 kb on - strand, within PagCFBP13505_RS07860 at 163.729 kb on - strand, within PagCFBP13505_RS07860 at 163.860 kb on + strand, within PagCFBP13505_RS07860 at 163.881 kb on + strand, within PagCFBP13505_RS07860 at 163.881 kb on + strand, within PagCFBP13505_RS07860 at 163.882 kb on - strand, within PagCFBP13505_RS07860 at 163.915 kb on + strand, within PagCFBP13505_RS07860 at 164.022 kb on + strand, within PagCFBP13505_RS07860 at 164.023 kb on - strand, within PagCFBP13505_RS07860 at 164.144 kb on - strand, within PagCFBP13505_RS07860 at 164.159 kb on - strand, within PagCFBP13505_RS07860 at 164.159 kb on - strand, within PagCFBP13505_RS07860 at 164.281 kb on + strand at 164.281 kb on + strand at 164.281 kb on + strand at 164.281 kb on + strand at 164.281 kb on + strand at 164.282 kb on - strand at 164.363 kb on - strand at 164.425 kb on + strand at 164.425 kb on + strand at 164.462 kb on + strand at 164.462 kb on + strand at 164.462 kb on + strand at 164.462 kb on + strand at 164.462 kb on + strand at 164.463 kb on - strand at 164.463 kb on - strand at 164.463 kb on - strand at 164.463 kb on - strand at 164.465 kb on + strand at 164.466 kb on - strand at 164.466 kb on - strand at 164.509 kb on - strand at 164.521 kb on - strand at 164.541 kb on - strand at 164.698 kb on - strand, within PagCFBP13505_RS07865 at 164.780 kb on + strand, within PagCFBP13505_RS07865 at 164.795 kb on + strand, within PagCFBP13505_RS07865 at 164.826 kb on + strand, within PagCFBP13505_RS07865 at 164.928 kb on + strand, within PagCFBP13505_RS07865 at 165.075 kb on + strand, within PagCFBP13505_RS07865 at 165.076 kb on - strand, within PagCFBP13505_RS07865 at 165.090 kb on + strand, within PagCFBP13505_RS07865 at 165.155 kb on + strand, within PagCFBP13505_RS07865 at 165.156 kb on - strand, within PagCFBP13505_RS07865 at 165.159 kb on + strand, within PagCFBP13505_RS07865 at 165.160 kb on - strand, within PagCFBP13505_RS07865 at 165.167 kb on - strand, within PagCFBP13505_RS07865 at 165.232 kb on - strand, within PagCFBP13505_RS07865 at 165.279 kb on + strand, within PagCFBP13505_RS07865 at 165.279 kb on + strand, within PagCFBP13505_RS07865 at 165.280 kb on - strand, within PagCFBP13505_RS07865 at 165.303 kb on + strand, within PagCFBP13505_RS07865 at 165.306 kb on - strand at 165.306 kb on - strand at 165.379 kb on - strand at 165.422 kb on - strand at 165.422 kb on - strand at 165.424 kb on + strand at 165.424 kb on + strand at 165.424 kb on + strand at 165.425 kb on - strand at 165.425 kb on - strand at 165.425 kb on - strand at 165.447 kb on - strand at 165.459 kb on + strand at 165.460 kb on - strand at 165.510 kb on - strand, within PagCFBP13505_RS07870 at 165.569 kb on - strand, within PagCFBP13505_RS07870 at 165.615 kb on + strand, within PagCFBP13505_RS07870 at 165.737 kb on - strand, within PagCFBP13505_RS07870 at 166.232 kb on + strand at 166.233 kb on - strand at 166.233 kb on - strand at 166.233 kb on - strand at 166.239 kb on - strand at 166.239 kb on - strand at 166.239 kb on - strand at 166.239 kb on - strand at 166.317 kb on + strand, within PagCFBP13505_RS07875 at 166.317 kb on + strand, within PagCFBP13505_RS07875 at 166.318 kb on - strand, within PagCFBP13505_RS07875 at 166.318 kb on - strand, within PagCFBP13505_RS07875 at 166.354 kb on + strand, within PagCFBP13505_RS07875
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 163,491 + PagCFBP13505_RS07860 0.47 +0.3 163,492 - PagCFBP13505_RS07860 0.47 -0.2 163,492 - PagCFBP13505_RS07860 0.47 +0.5 163,636 + PagCFBP13505_RS07860 0.55 +0.6 163,696 - PagCFBP13505_RS07860 0.59 -1.4 163,711 + PagCFBP13505_RS07860 0.60 +0.4 163,729 - PagCFBP13505_RS07860 0.61 -1.4 163,729 - PagCFBP13505_RS07860 0.61 +0.8 163,860 + PagCFBP13505_RS07860 0.68 +0.5 163,881 + PagCFBP13505_RS07860 0.69 +2.1 163,881 + PagCFBP13505_RS07860 0.69 +1.3 163,882 - PagCFBP13505_RS07860 0.69 +1.7 163,915 + PagCFBP13505_RS07860 0.71 +0.8 164,022 + PagCFBP13505_RS07860 0.77 +0.5 164,023 - PagCFBP13505_RS07860 0.77 +0.4 164,144 - PagCFBP13505_RS07860 0.84 +1.0 164,159 - PagCFBP13505_RS07860 0.85 +1.2 164,159 - PagCFBP13505_RS07860 0.85 +0.6 164,281 + +1.6 164,281 + +0.7 164,281 + +1.2 164,281 + +1.4 164,281 + +2.8 164,282 - +1.4 164,363 - +1.1 164,425 + +0.6 164,425 + -0.4 164,462 + +0.6 164,462 + -0.1 164,462 + +0.2 164,462 + +0.4 164,462 + -1.3 164,463 - +0.1 164,463 - +0.7 164,463 - +0.2 164,463 - -0.6 164,465 + -2.2 164,466 - +2.0 164,466 - -1.8 164,509 - +0.4 164,521 - +0.2 164,541 - -0.8 164,698 - PagCFBP13505_RS07865 0.25 -0.7 164,780 + PagCFBP13505_RS07865 0.34 -0.1 164,795 + PagCFBP13505_RS07865 0.35 -2.9 164,826 + PagCFBP13505_RS07865 0.39 -0.4 164,928 + PagCFBP13505_RS07865 0.50 -0.2 165,075 + PagCFBP13505_RS07865 0.65 -0.1 165,076 - PagCFBP13505_RS07865 0.65 -0.8 165,090 + PagCFBP13505_RS07865 0.67 +2.1 165,155 + PagCFBP13505_RS07865 0.74 -0.3 165,156 - PagCFBP13505_RS07865 0.74 -0.3 165,159 + PagCFBP13505_RS07865 0.74 +0.1 165,160 - PagCFBP13505_RS07865 0.74 -0.3 165,167 - PagCFBP13505_RS07865 0.75 +0.7 165,232 - PagCFBP13505_RS07865 0.82 +0.1 165,279 + PagCFBP13505_RS07865 0.87 -0.2 165,279 + PagCFBP13505_RS07865 0.87 +0.3 165,280 - PagCFBP13505_RS07865 0.87 +0.4 165,303 + PagCFBP13505_RS07865 0.90 -1.2 165,306 - +0.0 165,306 - -0.4 165,379 - +1.2 165,422 - +0.4 165,422 - -0.2 165,424 + +0.2 165,424 + +0.2 165,424 + -0.2 165,425 - +1.2 165,425 - +0.6 165,425 - +0.2 165,447 - +0.0 165,459 + -0.1 165,460 - -0.7 165,510 - PagCFBP13505_RS07870 0.11 -0.4 165,569 - PagCFBP13505_RS07870 0.19 -0.2 165,615 + PagCFBP13505_RS07870 0.25 -0.0 165,737 - PagCFBP13505_RS07870 0.41 +1.0 166,232 + -0.6 166,233 - +0.2 166,233 - -0.5 166,233 - -1.0 166,239 - +0.4 166,239 - -0.2 166,239 - -0.8 166,239 - +0.4 166,317 + PagCFBP13505_RS07875 0.18 -1.6 166,317 + PagCFBP13505_RS07875 0.18 -0.2 166,318 - PagCFBP13505_RS07875 0.18 -1.2 166,318 - PagCFBP13505_RS07875 0.18 -0.7 166,354 + PagCFBP13505_RS07875 0.23 +0.0
Or see this region's nucleotide sequence