Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01369

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01368 and MPMX20_01369 are separated by 130 nucleotidesMPMX20_01369 and MPMX20_01370 are separated by 35 nucleotidesMPMX20_01370 and MPMX20_01371 are separated by 9 nucleotides MPMX20_01368: MPMX20_01368 - hypothetical protein, at 1,434,453 to 1,435,742 _01368 MPMX20_01369: MPMX20_01369 - Tol-Pal system protein TolB, at 1,435,873 to 1,437,165 _01369 MPMX20_01370: MPMX20_01370 - Peptidoglycan-associated lipoprotein, at 1,437,201 to 1,437,722 _01370 MPMX20_01371: MPMX20_01371 - Cell division coordinator CpoB, at 1,437,732 to 1,438,526 _01371 Position (kb) 1435 1436 1437 1438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1434.912 kb on + strand, within MPMX20_01368at 1434.985 kb on - strand, within MPMX20_01368at 1435.161 kb on + strand, within MPMX20_01368at 1435.370 kb on - strand, within MPMX20_01368at 1435.450 kb on - strand, within MPMX20_01368at 1435.518 kb on + strand, within MPMX20_01368at 1435.620 kb on - strandat 1435.620 kb on - strandat 1435.620 kb on - strandat 1435.627 kb on + strandat 1435.655 kb on - strandat 1435.655 kb on - strandat 1435.655 kb on - strandat 1435.747 kb on - strandat 1435.775 kb on + strandat 1435.851 kb on - strandat 1435.851 kb on - strandat 1435.977 kb on + strandat 1436.058 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.181 kb on + strand, within MPMX20_01369at 1436.189 kb on - strand, within MPMX20_01369at 1436.189 kb on - strand, within MPMX20_01369at 1436.308 kb on - strand, within MPMX20_01369at 1436.353 kb on + strand, within MPMX20_01369at 1436.388 kb on + strand, within MPMX20_01369at 1436.388 kb on + strand, within MPMX20_01369at 1436.391 kb on - strand, within MPMX20_01369at 1436.396 kb on - strand, within MPMX20_01369at 1436.411 kb on - strand, within MPMX20_01369at 1436.426 kb on - strand, within MPMX20_01369at 1436.456 kb on - strand, within MPMX20_01369at 1436.478 kb on + strand, within MPMX20_01369at 1436.490 kb on - strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.504 kb on + strand, within MPMX20_01369at 1436.512 kb on - strand, within MPMX20_01369at 1436.512 kb on - strand, within MPMX20_01369at 1436.545 kb on + strand, within MPMX20_01369at 1436.610 kb on - strand, within MPMX20_01369at 1436.658 kb on + strand, within MPMX20_01369at 1436.666 kb on - strand, within MPMX20_01369at 1436.680 kb on - strand, within MPMX20_01369at 1436.839 kb on + strand, within MPMX20_01369at 1436.862 kb on - strand, within MPMX20_01369at 1436.892 kb on - strand, within MPMX20_01369at 1436.921 kb on + strand, within MPMX20_01369at 1437.042 kb on - strandat 1437.048 kb on - strandat 1437.050 kb on + strandat 1437.065 kb on + strandat 1437.130 kb on - strandat 1437.140 kb on - strandat 1437.140 kb on - strandat 1437.311 kb on + strand, within MPMX20_01370at 1437.314 kb on - strand, within MPMX20_01370at 1437.410 kb on + strand, within MPMX20_01370at 1437.442 kb on + strand, within MPMX20_01370at 1437.538 kb on + strand, within MPMX20_01370at 1437.602 kb on + strand, within MPMX20_01370at 1437.626 kb on + strand, within MPMX20_01370at 1437.663 kb on + strand, within MPMX20_01370at 1437.776 kb on + strandat 1437.820 kb on - strand, within MPMX20_01371at 1437.883 kb on + strand, within MPMX20_01371at 1438.030 kb on - strand, within MPMX20_01371at 1438.033 kb on - strand, within MPMX20_01371at 1438.135 kb on + strand, within MPMX20_01371at 1438.148 kb on - strand, within MPMX20_01371

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A
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1,434,912 + MPMX20_01368 0.36 -3.2
1,434,985 - MPMX20_01368 0.41 -1.9
1,435,161 + MPMX20_01368 0.55 -2.8
1,435,370 - MPMX20_01368 0.71 -3.2
1,435,450 - MPMX20_01368 0.77 -1.4
1,435,518 + MPMX20_01368 0.83 +0.8
1,435,620 - -2.4
1,435,620 - -3.0
1,435,620 - -1.5
1,435,627 + -2.1
1,435,655 - -4.1
1,435,655 - -3.5
1,435,655 - -1.9
1,435,747 - -1.2
1,435,775 + +0.3
1,435,851 - -0.8
1,435,851 - +0.2
1,435,977 + -2.7
1,436,058 + MPMX20_01369 0.14 -1.4
1,436,181 + MPMX20_01369 0.24 -2.6
1,436,181 + MPMX20_01369 0.24 -0.2
1,436,181 + MPMX20_01369 0.24 -3.2
1,436,189 - MPMX20_01369 0.24 -2.7
1,436,189 - MPMX20_01369 0.24 -1.0
1,436,308 - MPMX20_01369 0.34 -2.0
1,436,353 + MPMX20_01369 0.37 -1.5
1,436,388 + MPMX20_01369 0.40 -3.0
1,436,388 + MPMX20_01369 0.40 -0.2
1,436,391 - MPMX20_01369 0.40 +0.6
1,436,396 - MPMX20_01369 0.40 -2.1
1,436,411 - MPMX20_01369 0.42 -3.3
1,436,426 - MPMX20_01369 0.43 -2.4
1,436,456 - MPMX20_01369 0.45 -3.1
1,436,478 + MPMX20_01369 0.47 -0.6
1,436,490 - MPMX20_01369 0.48 -2.1
1,436,504 + MPMX20_01369 0.49 -1.8
1,436,504 + MPMX20_01369 0.49 -0.5
1,436,504 + MPMX20_01369 0.49 -2.6
1,436,504 + MPMX20_01369 0.49 -0.1
1,436,504 + MPMX20_01369 0.49 -0.7
1,436,512 - MPMX20_01369 0.49 -0.2
1,436,512 - MPMX20_01369 0.49 -1.6
1,436,545 + MPMX20_01369 0.52 -1.2
1,436,610 - MPMX20_01369 0.57 -2.3
1,436,658 + MPMX20_01369 0.61 -2.2
1,436,666 - MPMX20_01369 0.61 -2.2
1,436,680 - MPMX20_01369 0.62 -3.0
1,436,839 + MPMX20_01369 0.75 -2.1
1,436,862 - MPMX20_01369 0.76 -1.3
1,436,892 - MPMX20_01369 0.79 +0.8
1,436,921 + MPMX20_01369 0.81 +0.0
1,437,042 - -3.5
1,437,048 - -0.2
1,437,050 + -2.6
1,437,065 + -1.6
1,437,130 - -1.0
1,437,140 - -1.9
1,437,140 - -1.8
1,437,311 + MPMX20_01370 0.21 -0.5
1,437,314 - MPMX20_01370 0.22 -3.1
1,437,410 + MPMX20_01370 0.40 -1.9
1,437,442 + MPMX20_01370 0.46 -1.1
1,437,538 + MPMX20_01370 0.65 -2.6
1,437,602 + MPMX20_01370 0.77 -2.7
1,437,626 + MPMX20_01370 0.81 -4.4
1,437,663 + MPMX20_01370 0.89 -2.3
1,437,776 + -0.1
1,437,820 - MPMX20_01371 0.11 +0.2
1,437,883 + MPMX20_01371 0.19 -1.3
1,438,030 - MPMX20_01371 0.37 -0.7
1,438,033 - MPMX20_01371 0.38 +0.7
1,438,135 + MPMX20_01371 0.51 -1.1
1,438,148 - MPMX20_01371 0.52 -1.5

Or see this region's nucleotide sequence