Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03533

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03531 and MPMX19_03532 are separated by 94 nucleotidesMPMX19_03532 and MPMX19_03533 are separated by 297 nucleotidesMPMX19_03533 and MPMX19_03534 are separated by 32 nucleotidesMPMX19_03534 and MPMX19_03535 overlap by 4 nucleotides MPMX19_03531: MPMX19_03531 - PCP degradation transcriptional activation protein, at 950,568 to 951,506 _03531 MPMX19_03532: MPMX19_03532 - hypothetical protein, at 951,601 to 952,068 _03532 MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562 _03533 MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527 _03534 MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513 _03535 Position (kb) 952 953 954Strain fitness (log2 ratio) -2 -1 0 1 2at 951.525 kb on + strandat 951.587 kb on + strandat 951.588 kb on - strandat 951.588 kb on - strandat 951.618 kb on + strandat 951.618 kb on + strandat 951.619 kb on - strandat 951.673 kb on + strand, within MPMX19_03532at 951.673 kb on + strand, within MPMX19_03532at 952.066 kb on + strandat 952.067 kb on - strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.819 kb on + strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.874 kb on - strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 953.089 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.297 kb on - strand, within MPMX19_03533at 953.297 kb on - strand, within MPMX19_03533at 953.536 kb on + strandat 953.537 kb on - strandat 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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951,525 + -0.6
951,587 + -1.4
951,588 - -0.4
951,588 - +0.2
951,618 + -0.2
951,618 + -0.8
951,619 - +1.3
951,673 + MPMX19_03532 0.15 -2.3
951,673 + MPMX19_03532 0.15 -1.2
952,066 + -0.6
952,067 - +0.6
952,329 + -0.4
952,329 + +0.0
952,329 + -2.0
952,329 + -0.8
952,330 - -1.1
952,330 - +1.8
952,330 - -2.2
952,330 - -1.2
952,330 - +0.0
952,819 + MPMX19_03533 0.38 +1.6
952,820 - MPMX19_03533 0.38 +0.5
952,820 - MPMX19_03533 0.38 -0.6
952,820 - MPMX19_03533 0.38 +0.7
952,873 + MPMX19_03533 0.42 -0.3
952,873 + MPMX19_03533 0.42 -0.6
952,873 + MPMX19_03533 0.42 +0.6
952,874 - MPMX19_03533 0.42 +0.5
952,903 + MPMX19_03533 0.45 +0.0
952,903 + MPMX19_03533 0.45 -0.7
952,903 + MPMX19_03533 0.45 +0.4
952,904 - MPMX19_03533 0.45 +0.6
952,904 - MPMX19_03533 0.45 +1.0
952,904 - MPMX19_03533 0.45 +0.0
952,904 - MPMX19_03533 0.45 -1.0
952,945 + MPMX19_03533 0.48 +0.2
952,945 + MPMX19_03533 0.48 -1.3
952,945 + MPMX19_03533 0.48 -1.2
952,946 - MPMX19_03533 0.48 +0.6
952,946 - MPMX19_03533 0.48 -0.5
952,972 + MPMX19_03533 0.51 -0.4
952,972 + MPMX19_03533 0.51 -0.1
952,972 + MPMX19_03533 0.51 +0.4
952,972 + MPMX19_03533 0.51 +0.5
952,972 + MPMX19_03533 0.51 -0.2
952,972 + MPMX19_03533 0.51 +0.2
952,972 + MPMX19_03533 0.51 -1.8
952,972 + MPMX19_03533 0.51 -0.4
952,972 + MPMX19_03533 0.51 +0.0
952,972 + MPMX19_03533 0.51 +0.3
952,972 + MPMX19_03533 0.51 +0.6
952,972 + MPMX19_03533 0.51 +0.9
952,972 + MPMX19_03533 0.51 +0.2
952,972 + MPMX19_03533 0.51 -0.6
952,972 + MPMX19_03533 0.51 -0.8
952,972 + MPMX19_03533 0.51 -0.2
952,973 - MPMX19_03533 0.51 -0.6
952,973 - MPMX19_03533 0.51 -1.4
952,973 - MPMX19_03533 0.51 -0.4
952,973 - MPMX19_03533 0.51 -0.4
952,973 - MPMX19_03533 0.51 +0.0
952,973 - MPMX19_03533 0.51 +0.6
952,973 - MPMX19_03533 0.51 -1.0
952,973 - MPMX19_03533 0.51 +1.3
952,973 - MPMX19_03533 0.51 -0.4
952,973 - MPMX19_03533 0.51 -1.0
953,089 + MPMX19_03533 0.60 -1.7
953,266 + MPMX19_03533 0.75 -0.2
953,266 + MPMX19_03533 0.75 -1.0
953,266 + MPMX19_03533 0.75 -0.3
953,266 + MPMX19_03533 0.75 -0.1
953,266 + MPMX19_03533 0.75 -1.7
953,266 + MPMX19_03533 0.75 +0.8
953,266 + MPMX19_03533 0.75 +0.6
953,266 + MPMX19_03533 0.75 +0.3
953,266 + MPMX19_03533 0.75 +0.6
953,266 + MPMX19_03533 0.75 -1.2
953,267 - MPMX19_03533 0.75 -1.7
953,267 - MPMX19_03533 0.75 -0.8
953,267 - MPMX19_03533 0.75 -0.4
953,267 - MPMX19_03533 0.75 +0.2
953,267 - MPMX19_03533 0.75 -0.5
953,267 - MPMX19_03533 0.75 -0.3
953,267 - MPMX19_03533 0.75 -2.0
953,267 - MPMX19_03533 0.75 -1.2
953,296 + MPMX19_03533 0.78 -0.4
953,296 + MPMX19_03533 0.78 -1.2
953,296 + MPMX19_03533 0.78 +0.9
953,297 - MPMX19_03533 0.78 +0.2
953,297 - MPMX19_03533 0.78 -0.8
953,536 + +0.0
953,537 - -0.2
953,721 + MPMX19_03534 0.14 -0.7
953,721 + MPMX19_03534 0.14 -1.2
953,721 + MPMX19_03534 0.14 -0.3
953,721 + MPMX19_03534 0.14 -1.6
953,721 + MPMX19_03534 0.14 -0.4
953,721 + MPMX19_03534 0.14 -0.3
953,721 + MPMX19_03534 0.14 +0.3
953,721 + MPMX19_03534 0.14 +0.2
953,721 + MPMX19_03534 0.14 -2.3
953,721 + MPMX19_03534 0.14 -1.6
953,721 + MPMX19_03534 0.14 -0.1
953,721 + MPMX19_03534 0.14 +0.4
953,721 + MPMX19_03534 0.14 +0.6
953,722 - MPMX19_03534 0.14 -0.3
953,722 - MPMX19_03534 0.14 -1.2
953,722 - MPMX19_03534 0.14 -1.2
953,722 - MPMX19_03534 0.14 +1.0
953,722 - MPMX19_03534 0.14 -0.6
953,722 - MPMX19_03534 0.14 +0.0
953,722 - MPMX19_03534 0.14 +1.2
953,722 - MPMX19_03534 0.14 -0.9
953,722 - MPMX19_03534 0.14 -0.7
953,736 + MPMX19_03534 0.15 -1.4
953,736 + MPMX19_03534 0.15 -1.1
953,736 + MPMX19_03534 0.15 -1.8
953,736 + MPMX19_03534 0.15 -0.6
953,736 + MPMX19_03534 0.15 -1.7
953,737 - MPMX19_03534 0.15 -0.1
953,737 - MPMX19_03534 0.15 -0.7
953,737 - MPMX19_03534 0.15 +0.3
953,737 - MPMX19_03534 0.15 +0.3
953,737 - MPMX19_03534 0.15 -1.0
954,018 + MPMX19_03534 0.45 -0.6
954,018 + MPMX19_03534 0.45 +0.2
954,027 + MPMX19_03534 0.46 +0.3
954,027 + MPMX19_03534 0.46 -1.6
954,459 + -1.4
954,459 + -1.4
954,459 + +0.2
954,459 + +0.8
954,459 + -0.8
954,459 + -0.5
954,459 + -0.2
954,459 + +0.3
954,460 - -0.2
954,460 - -1.1
954,460 - -0.4
954,460 - -0.9
954,460 - +0.2
954,460 - -0.8
954,460 - -0.7
954,460 - -0.8
954,460 - -1.6

Or see this region's nucleotide sequence