Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06937

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06935 and MPMX19_06936 are separated by 45 nucleotidesMPMX19_06936 and MPMX19_06937 are separated by 133 nucleotidesMPMX19_06937 and MPMX19_06938 are separated by 132 nucleotidesMPMX19_06938 and MPMX19_06939 overlap by 8 nucleotides MPMX19_06935: MPMX19_06935 - putative periplasmic iron-binding protein, at 207,716 to 208,639 _06935 MPMX19_06936: MPMX19_06936 - hypothetical protein, at 208,685 to 209,401 _06936 MPMX19_06937: MPMX19_06937 - hypothetical protein, at 209,535 to 210,818 _06937 MPMX19_06938: MPMX19_06938 - Short-chain-enoyl-CoA hydratase, at 210,951 to 211,766 _06938 MPMX19_06939: MPMX19_06939 - S-(hydroxymethyl)glutathione dehydrogenase, at 211,759 to 212,889 _06939 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1at 208.536 kb on - strand, within MPMX19_06935at 208.536 kb on - strand, within MPMX19_06935at 208.536 kb on - strand, within MPMX19_06935at 208.577 kb on + strandat 208.577 kb on + strandat 208.577 kb on + strandat 208.577 kb on + strandat 208.578 kb on - strandat 208.578 kb on - strandat 208.578 kb on - strandat 208.578 kb on - strandat 208.686 kb on + strandat 208.687 kb on - strandat 208.687 kb on - strandat 208.687 kb on - strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.746 kb on + strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.747 kb on - strandat 208.863 kb on + strand, within MPMX19_06936at 208.863 kb on + strand, within MPMX19_06936at 208.863 kb on + strand, within MPMX19_06936at 208.863 kb on + strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 208.864 kb on - strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.121 kb on + strand, within MPMX19_06936at 209.122 kb on - strand, within MPMX19_06936at 209.122 kb on - strand, within MPMX19_06936at 209.122 kb on - strand, within MPMX19_06936at 209.122 kb on - strand, within MPMX19_06936at 209.122 kb on - strand, within MPMX19_06936at 209.322 kb on + strand, within MPMX19_06936at 209.322 kb on + strand, within MPMX19_06936at 209.322 kb on + strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.323 kb on - strand, within MPMX19_06936at 209.467 kb on + strandat 209.467 kb on + strandat 209.468 kb on - strandat 209.468 kb on - strandat 209.479 kb on - strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.635 kb on + strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.636 kb on - strandat 209.638 kb on + strandat 209.638 kb on + strandat 209.639 kb on - strandat 209.639 kb on - strandat 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.686 kb on + strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.687 kb on - strand, within MPMX19_06937at 209.821 kb on + strand, within MPMX19_06937at 209.821 kb on + strand, within MPMX19_06937at 209.821 kb on + strand, within MPMX19_06937at 209.821 kb on + strand, within MPMX19_06937at 209.822 kb on - strand, within MPMX19_06937at 209.929 kb on + strand, within MPMX19_06937at 209.930 kb on - strand, within MPMX19_06937at 209.930 kb on - strand, within MPMX19_06937at 209.930 kb on - strand, within MPMX19_06937at 209.930 kb on - strand, within MPMX19_06937at 210.133 kb on + strand, within MPMX19_06937at 210.133 kb on + strand, within MPMX19_06937at 210.133 kb on + strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.245 kb on - strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.263 kb on - strand, within MPMX19_06937at 210.263 kb on - strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.329 kb on - strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.494 kb on - strand, within MPMX19_06937at 210.939 kb on + strandat 210.939 kb on + strandat 210.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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208,536 - MPMX19_06935 0.89 +0.2
208,536 - MPMX19_06935 0.89 -0.9
208,536 - MPMX19_06935 0.89 -1.1
208,577 + -0.4
208,577 + +0.0
208,577 + -1.7
208,577 + -0.2
208,578 - +0.5
208,578 - +1.2
208,578 - +1.3
208,578 - -0.2
208,686 + +1.2
208,687 - +0.5
208,687 - -1.8
208,687 - -1.8
208,746 + -0.8
208,746 + +0.4
208,746 + -1.6
208,746 + +0.1
208,746 + +0.9
208,746 + -0.2
208,746 + +0.9
208,746 + +0.3
208,746 + -1.8
208,746 + -0.5
208,746 + -0.3
208,746 + +0.8
208,746 + +0.5
208,747 - -1.4
208,747 - +0.6
208,747 - -0.6
208,747 - +0.8
208,747 - +0.3
208,747 - -0.4
208,747 - +0.2
208,747 - -0.7
208,747 - +0.9
208,747 - -0.0
208,747 - -1.2
208,747 - +0.1
208,747 - -0.2
208,747 - -0.2
208,863 + MPMX19_06936 0.25 -0.5
208,863 + MPMX19_06936 0.25 +1.2
208,863 + MPMX19_06936 0.25 -0.1
208,863 + MPMX19_06936 0.25 -0.6
208,864 - MPMX19_06936 0.25 -1.2
208,864 - MPMX19_06936 0.25 -0.1
208,864 - MPMX19_06936 0.25 -1.3
208,864 - MPMX19_06936 0.25 -0.8
208,864 - MPMX19_06936 0.25 -0.9
208,864 - MPMX19_06936 0.25 +0.4
209,121 + MPMX19_06936 0.61 +1.0
209,121 + MPMX19_06936 0.61 -0.3
209,121 + MPMX19_06936 0.61 +0.3
209,121 + MPMX19_06936 0.61 -0.8
209,121 + MPMX19_06936 0.61 +0.0
209,121 + MPMX19_06936 0.61 +0.1
209,122 - MPMX19_06936 0.61 +0.4
209,122 - MPMX19_06936 0.61 -0.6
209,122 - MPMX19_06936 0.61 -0.1
209,122 - MPMX19_06936 0.61 -0.9
209,122 - MPMX19_06936 0.61 -0.1
209,322 + MPMX19_06936 0.89 -0.2
209,322 + MPMX19_06936 0.89 -0.0
209,322 + MPMX19_06936 0.89 +0.5
209,323 - MPMX19_06936 0.89 +0.4
209,323 - MPMX19_06936 0.89 -0.5
209,323 - MPMX19_06936 0.89 -0.4
209,323 - MPMX19_06936 0.89 -0.2
209,323 - MPMX19_06936 0.89 -0.5
209,323 - MPMX19_06936 0.89 -0.4
209,467 + +0.0
209,467 + +0.2
209,468 - +0.8
209,468 - -0.2
209,479 - -0.3
209,635 + +0.3
209,635 + -1.2
209,635 + +1.4
209,635 + -1.3
209,635 + -0.0
209,635 + -0.8
209,635 + -0.1
209,635 + -0.2
209,635 + -0.2
209,635 + -0.4
209,635 + -0.1
209,635 + +0.9
209,636 - -0.8
209,636 - -0.0
209,636 - -0.4
209,636 - +0.3
209,636 - +1.6
209,636 - -0.3
209,636 - +0.2
209,636 - +0.6
209,636 - -1.2
209,636 - -0.1
209,636 - +0.5
209,636 - -0.8
209,638 + -0.4
209,638 + +0.2
209,639 - -0.3
209,639 - +0.8
209,686 + MPMX19_06937 0.12 -1.4
209,686 + MPMX19_06937 0.12 -2.0
209,686 + MPMX19_06937 0.12 -0.7
209,686 + MPMX19_06937 0.12 -1.1
209,686 + MPMX19_06937 0.12 +0.0
209,686 + MPMX19_06937 0.12 +0.1
209,686 + MPMX19_06937 0.12 -1.0
209,686 + MPMX19_06937 0.12 -0.7
209,686 + MPMX19_06937 0.12 -1.7
209,686 + MPMX19_06937 0.12 -1.2
209,686 + MPMX19_06937 0.12 +0.3
209,686 + MPMX19_06937 0.12 +0.8
209,686 + MPMX19_06937 0.12 -0.1
209,686 + MPMX19_06937 0.12 +0.2
209,686 + MPMX19_06937 0.12 -1.8
209,686 + MPMX19_06937 0.12 -1.2
209,687 - MPMX19_06937 0.12 -1.1
209,687 - MPMX19_06937 0.12 -0.2
209,687 - MPMX19_06937 0.12 -1.0
209,687 - MPMX19_06937 0.12 +0.9
209,687 - MPMX19_06937 0.12 -1.1
209,687 - MPMX19_06937 0.12 -0.3
209,687 - MPMX19_06937 0.12 -0.6
209,687 - MPMX19_06937 0.12 -0.3
209,687 - MPMX19_06937 0.12 +0.4
209,687 - MPMX19_06937 0.12 +0.2
209,821 + MPMX19_06937 0.22 +0.1
209,821 + MPMX19_06937 0.22 -0.2
209,821 + MPMX19_06937 0.22 -1.4
209,821 + MPMX19_06937 0.22 -0.3
209,822 - MPMX19_06937 0.22 -0.7
209,929 + MPMX19_06937 0.31 +0.3
209,930 - MPMX19_06937 0.31 +1.6
209,930 - MPMX19_06937 0.31 +0.1
209,930 - MPMX19_06937 0.31 +0.7
209,930 - MPMX19_06937 0.31 +0.1
210,133 + MPMX19_06937 0.47 -1.8
210,133 + MPMX19_06937 0.47 -0.4
210,133 + MPMX19_06937 0.47 +0.4
210,134 - MPMX19_06937 0.47 +0.5
210,134 - MPMX19_06937 0.47 -0.1
210,134 - MPMX19_06937 0.47 -1.8
210,245 - MPMX19_06937 0.55 -0.8
210,262 + MPMX19_06937 0.57 +0.0
210,262 + MPMX19_06937 0.57 -1.9
210,262 + MPMX19_06937 0.57 -1.6
210,262 + MPMX19_06937 0.57 +0.3
210,262 + MPMX19_06937 0.57 +0.2
210,262 + MPMX19_06937 0.57 +0.4
210,263 - MPMX19_06937 0.57 -1.3
210,263 - MPMX19_06937 0.57 +0.3
210,319 + MPMX19_06937 0.61 -2.7
210,319 + MPMX19_06937 0.61 +0.5
210,319 + MPMX19_06937 0.61 -0.1
210,319 + MPMX19_06937 0.61 -1.3
210,319 + MPMX19_06937 0.61 +0.6
210,319 + MPMX19_06937 0.61 -0.5
210,319 + MPMX19_06937 0.61 -0.3
210,320 - MPMX19_06937 0.61 -0.4
210,320 - MPMX19_06937 0.61 -0.1
210,320 - MPMX19_06937 0.61 -0.8
210,320 - MPMX19_06937 0.61 +0.2
210,320 - MPMX19_06937 0.61 -0.7
210,320 - MPMX19_06937 0.61 -0.1
210,320 - MPMX19_06937 0.61 +0.2
210,320 - MPMX19_06937 0.61 -0.6
210,328 + MPMX19_06937 0.62 -0.2
210,328 + MPMX19_06937 0.62 -1.2
210,328 + MPMX19_06937 0.62 -0.8
210,328 + MPMX19_06937 0.62 -0.2
210,329 - MPMX19_06937 0.62 -0.0
210,493 + MPMX19_06937 0.75 +0.2
210,493 + MPMX19_06937 0.75 +1.0
210,493 + MPMX19_06937 0.75 -1.0
210,494 - MPMX19_06937 0.75 -0.6
210,939 + -0.0
210,939 + +1.0
210,940 - +0.0

Or see this region's nucleotide sequence