Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03671

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
1,107,810	+		MPMX19_03670	0.74	+0.1
1,107,810	+		MPMX19_03670	0.74	-0.3
1,107,811	-		MPMX19_03670	0.74	-0.5
1,107,811	-		MPMX19_03670	0.74	+0.2
1,107,811	-		MPMX19_03670	0.74	-2.5
1,107,811	-		MPMX19_03670	0.74	+0.0
1,107,811	-		MPMX19_03670	0.74	+0.2
1,107,845	+		MPMX19_03670	0.76	-1.5
1,107,845	+		MPMX19_03670	0.76	+0.0
1,107,845	+		MPMX19_03670	0.76	+0.4
1,107,846	-		MPMX19_03670	0.76	+1.6
1,107,926	+		MPMX19_03670	0.82	+0.3
1,107,927	-		MPMX19_03670	0.83	-0.3
1,107,927	-		MPMX19_03670	0.83	-0.1
1,108,133	+				+0.2
1,108,133	+				-0.3
1,108,134	-				+0.8
1,108,134	-				+0.8
1,108,134	-				+0.3
1,108,322	-				+0.5
1,108,341	-				-1.5
1,108,344	-				+1.5
1,108,557	+				+1.5
1,108,557	+				+1.0
1,108,557	+				+0.3
1,108,557	+				-0.8
1,108,557	+				+0.8
1,108,557	+				-1.9
1,108,558	-				-0.3
1,108,558	-				-0.9
1,108,662	+				-1.0
1,108,662	+				+0.9
1,108,662	+				-1.5
1,108,662	+				+1.3
1,108,662	+				+0.3
1,108,662	+				+0.4
1,108,662	+				-0.9
1,108,662	+				-0.6
1,108,663	-				-1.8
1,108,663	-				-1.9
1,108,663	-				+0.3
1,108,663	-				+0.1
1,108,663	-				-0.0
1,108,663	-				+1.0
1,108,767	+				-0.3
1,108,767	+				-1.0
1,108,767	+				-0.7
1,108,767	+				+1.0
1,108,768	-				-0.4
1,108,768	-				-0.5
1,108,768	-				-1.2
1,108,768	-				-0.5
1,108,768	-				+0.6
1,108,768	-				-0.6
1,108,768	-				-0.8
1,108,768	-				+0.2
1,108,770	+				+0.5
1,108,770	+				-0.9
1,108,771	-				+1.0
1,108,771	-				-0.2
1,108,771	-				-0.6
1,108,771	-				+0.6
1,108,771	-				-1.6
1,108,771	-				-0.8
1,108,771	-				+0.9
1,108,833	+		MPMX19_03671	0.17	-0.3
1,108,833	+		MPMX19_03671	0.17	-1.0
1,108,833	+		MPMX19_03671	0.17	-0.8
1,108,833	+		MPMX19_03671	0.17	-0.4
1,108,833	+		MPMX19_03671	0.17	-0.5
1,108,833	+		MPMX19_03671	0.17	-0.3
1,108,833	+		MPMX19_03671	0.17	-0.5
1,108,833	+		MPMX19_03671	0.17	-0.2
1,108,833	+		MPMX19_03671	0.17	+1.0
1,108,834	-		MPMX19_03671	0.17	-1.0
1,108,834	-		MPMX19_03671	0.17	-0.0
1,108,834	-		MPMX19_03671	0.17	-0.8
1,108,834	-		MPMX19_03671	0.17	+0.6
1,108,834	-		MPMX19_03671	0.17	-1.5
1,108,834	-		MPMX19_03671	0.17	-1.3
1,108,834	-		MPMX19_03671	0.17	+1.5
1,108,834	-		MPMX19_03671	0.17	-0.2
1,109,127	+		MPMX19_03671	0.54	+0.3
1,109,127	+		MPMX19_03671	0.54	-0.4
1,109,128	-		MPMX19_03671	0.54	+0.1
1,109,262	+		MPMX19_03671	0.72	+0.4
1,109,262	+		MPMX19_03671	0.72	-1.5
1,109,262	+		MPMX19_03671	0.72	-0.3
1,109,262	+		MPMX19_03671	0.72	-0.6
1,109,262	+		MPMX19_03671	0.72	-1.1
1,109,263	-		MPMX19_03671	0.72	-0.3
1,109,263	-		MPMX19_03671	0.72	+0.9
1,109,263	-		MPMX19_03671	0.72	-0.2
1,109,334	+		MPMX19_03671	0.81	+0.5
1,109,334	+		MPMX19_03671	0.81	-1.3
1,109,335	-		MPMX19_03671	0.81	+0.5
1,109,335	-		MPMX19_03671	0.81	+0.7
1,109,337	+		MPMX19_03671	0.81	+1.0
1,109,337	+		MPMX19_03671	0.81	-0.5
1,109,337	+		MPMX19_03671	0.81	+0.7
1,109,338	-		MPMX19_03671	0.81	-0.0
1,109,413	+				+0.2
1,109,413	+				-0.2
1,109,413	+				+0.2
1,109,413	+				+1.5
1,109,414	-				+1.0
1,109,414	-				+0.0
1,109,414	-				-1.9
1,109,414	-				-1.0
1,109,414	-				+0.4
1,109,414	-				+0.5
1,109,431	-				-0.8
1,109,448	+				+0.5
1,109,448	+				+0.2
1,109,448	+				-0.6
1,109,448	+				-0.5
1,109,448	+				-1.3
1,109,448	+				-0.5
1,109,449	-				-1.2
1,109,449	-				+0.1
1,109,449	-				-0.0
1,109,449	-				-0.7
1,109,449	-				+0.2
1,109,449	-				+0.0
1,109,449	-				-1.3
1,109,449	-				+1.3
1,109,449	-				-2.0
1,109,449	-				-0.8
1,109,450	+				-1.0
1,109,450	+				-1.3
1,109,514	+				-1.3
1,109,514	+				-1.6
1,109,514	+				-0.3
1,109,514	+				-1.3
1,109,514	+				-0.0
1,109,515	-				+1.2
1,109,515	-				+0.5
1,109,515	-				+1.3
1,109,515	-				+0.5
1,109,515	-				-0.2
1,109,515	-				-0.3
1,109,515	-				-0.5
1,109,518	-				-2.3
1,109,518	-				-0.1
1,109,526	+				-1.3
1,109,527	-				+0.1
1,109,567	+				-0.5
1,109,578	+				-0.8
1,109,578	+				-1.8
1,109,578	+				-0.3
1,109,578	+				-0.9
1,109,578	+				+1.3
1,109,578	+				+0.1
1,109,578	+				-0.8
1,109,578	+				+0.3
1,109,578	+				-0.8
1,109,578	+				-0.3
1,109,578	+				-0.9
1,109,578	+				+0.1
1,109,578	+				-0.3
1,109,578	+				-0.5
1,109,578	+				+1.2
1,109,579	-				-0.0
1,109,579	-				+1.8
1,109,579	-				+0.5
1,109,579	-				-1.7
1,109,579	-				-0.3
1,109,579	-				+0.5
1,109,579	-				-0.1
1,109,579	-				-1.3
1,109,579	-				-0.9
1,109,579	-				+1.5
1,109,579	-				-1.5
1,109,579	-				+1.0
1,109,579	-				-0.8
1,109,579	-				+1.0
1,109,579	-				-0.2
1,109,579	-				-1.7
1,109,589	-				-0.3
1,109,635	+				-0.7
1,109,635	+				+0.5
1,109,789	+		MPMX19_03672	0.36	-0.1
1,109,790	-		MPMX19_03672	0.36	-1.0
1,109,936	+		MPMX19_03672	0.68	-0.1
1,109,936	+		MPMX19_03672	0.68	+0.7
1,109,936	+		MPMX19_03672	0.68	-1.0
1,109,936	+		MPMX19_03672	0.68	-0.2
1,109,937	-		MPMX19_03672	0.68	-1.8
1,109,937	-		MPMX19_03672	0.68	-0.7
1,109,937	-		MPMX19_03672	0.68	-0.8
1,109,937	-		MPMX19_03672	0.68	+0.8
1,109,937	-		MPMX19_03672	0.68	+0.3
1,109,972	+		MPMX19_03672	0.76	+0.5
1,109,972	+		MPMX19_03672	0.76	-1.4
1,109,972	+		MPMX19_03672	0.76	-0.4
1,109,972	+		MPMX19_03672	0.76	-1.0
1,109,973	-		MPMX19_03672	0.76	+0.0
1,109,973	-		MPMX19_03672	0.76	-1.4
1,109,973	-		MPMX19_03672	0.76	-1.0
1,109,973	-		MPMX19_03672	0.76	+1.2
1,109,996	+		MPMX19_03672	0.81	-0.9
1,109,996	+		MPMX19_03672	0.81	-1.3
1,109,996	+		MPMX19_03672	0.81	-0.4
1,109,997	-		MPMX19_03672	0.81	-0.7
1,109,997	-		MPMX19_03672	0.81	+1.0
1,109,997	-		MPMX19_03672	0.81	-0.8
1,109,997	-		MPMX19_03672	0.81	+0.4
1,110,080	+				+1.4
1,110,080	+				-0.7
1,110,080	+				-0.5
1,110,080	+				-2.5
1,110,080	+				-0.1
1,110,080	+				-0.5
1,110,080	+				+0.5
1,110,080	+				-0.1
1,110,080	+				+0.4
1,110,080	+				-0.4
1,110,081	-				-0.5
1,110,081	-				-0.7
1,110,081	-				-1.2
1,110,081	-				-0.5
1,110,081	-				+0.5
1,110,081	-				-0.2
1,110,081	-				+0.3
1,110,081	-				+0.8
1,110,081	-				-0.2
1,110,081	-				+0.4
1,110,081	-				-0.8