Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03305 and ABZR88_RS03310 are separated by 85 nucleotides ABZR88_RS03310 and ABZR88_RS03315 are separated by 69 nucleotides ABZR88_RS03315 and ABZR88_RS03320 are separated by 11 nucleotides ABZR88_RS03320 and ABZR88_RS03325 are separated by 457 nucleotides
ABZR88_RS03305: ABZR88_RS03305 - tetratricopeptide repeat protein, at 799,956 to 800,726
_RS03305
ABZR88_RS03310: ABZR88_RS03310 - hypothetical protein, at 800,812 to 801,264
_RS03310
ABZR88_RS03315: ABZR88_RS03315 - hypothetical protein, at 801,334 to 801,684
_RS03315
ABZR88_RS03320: ABZR88_RS03320 - terminase small subunit, at 801,696 to 802,142
_RS03320
ABZR88_RS03325: ABZR88_RS03325 - hypothetical protein, at 802,600 to 802,782
_RS03325
Position (kb) 801
802 Strain fitness (log2 ratio) -1
0
1 at 800.378 kb on - strand, within ABZR88_RS03305 at 800.467 kb on + strand, within ABZR88_RS03305 at 800.523 kb on + strand, within ABZR88_RS03305 at 800.804 kb on - strand at 800.855 kb on - strand at 800.971 kb on + strand, within ABZR88_RS03310 at 801.297 kb on + strand at 801.571 kb on + strand, within ABZR88_RS03315 at 801.640 kb on - strand, within ABZR88_RS03315 at 801.642 kb on - strand, within ABZR88_RS03315 at 801.689 kb on + strand at 801.752 kb on + strand, within ABZR88_RS03320 at 802.493 kb on + strand at 802.500 kb on + strand at 802.520 kb on + strand at 802.547 kb on + strand at 802.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 800,378 - ABZR88_RS03305 0.55 +0.2 800,467 + ABZR88_RS03305 0.66 +0.3 800,523 + ABZR88_RS03305 0.74 -0.5 800,804 - +0.4 800,855 - +0.2 800,971 + ABZR88_RS03310 0.35 -0.4 801,297 + +0.1 801,571 + ABZR88_RS03315 0.68 -0.9 801,640 - ABZR88_RS03315 0.87 -0.0 801,642 - ABZR88_RS03315 0.88 -1.6 801,689 + +0.3 801,752 + ABZR88_RS03320 0.13 -1.2 802,493 + +0.1 802,500 + -0.2 802,520 + +1.6 802,547 + +0.1 802,600 - +0.5
Or see this region's nucleotide sequence